Wall clock time and date at job start Wed Apr 1 2020 00:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46919 * 2 1 4 4 C 1.50697 * 109.47024 * 239.99711 * 2 1 3 5 5 H 1.08007 * 119.99678 * 239.99904 * 4 2 1 6 6 C 1.37869 * 120.00316 * 59.99971 * 4 2 1 7 7 N 1.31519 * 120.00174 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47232 * 89.99919 * 8 6 4 10 10 H 1.48493 * 109.47666 * 210.00097 * 8 6 4 11 11 H 1.48504 * 109.47080 * 330.00099 * 8 6 4 12 12 N 1.46502 * 109.46992 * 119.99528 * 2 1 3 13 13 C 1.46495 * 120.00119 * 59.99937 * 12 2 1 14 14 S 1.65606 * 119.99879 * 240.00067 * 12 2 1 15 15 O 1.42102 * 106.39986 * 198.54542 * 14 12 2 16 16 O 1.42096 * 106.39832 * 331.46765 * 14 12 2 17 17 N 1.65602 * 107.21552 * 85.00627 * 14 12 2 18 18 C 1.47424 * 125.65071 * 82.58744 * 17 14 12 19 19 C 1.54690 * 104.94008 * 204.07070 * 18 17 14 20 20 C 1.55151 * 101.67867 * 323.27423 * 19 18 17 21 21 C 1.47024 * 125.64616 * 262.89258 * 17 14 12 22 22 H 1.08999 * 109.88195 * 59.48628 * 21 17 14 23 23 C 1.50704 * 109.88098 * 298.32404 * 21 17 14 24 24 C 1.34844 * 125.89165 * 0.35087 * 23 21 17 25 25 C 1.40892 * 107.41816 * 179.89019 * 24 23 21 26 26 C 1.34852 * 107.41709 * 0.37441 * 25 24 23 27 27 N 1.36345 * 125.88709 * 180.66173 * 23 21 17 28 28 C 1.46500 * 125.63984 * 359.95205 * 27 23 21 29 29 H 1.09006 * 109.47356 * 300.00160 * 1 2 3 30 30 H 1.08995 * 109.47272 * 60.00625 * 1 2 3 31 31 H 1.09000 * 109.47026 * 180.02562 * 1 2 3 32 32 H 0.96992 * 120.00536 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.47154 * 95.14994 * 13 12 2 34 34 H 1.08997 * 109.47390 * 215.14620 * 13 12 2 35 35 H 1.09004 * 109.47178 * 335.15068 * 13 12 2 36 36 H 1.09001 * 110.36308 * 322.99943 * 18 17 14 37 37 H 1.08995 * 110.36723 * 85.31967 * 18 17 14 38 38 H 1.09007 * 111.09560 * 205.10608 * 19 18 17 39 39 H 1.09000 * 110.84758 * 81.33879 * 19 18 17 40 40 H 1.09000 * 110.72448 * 276.97433 * 20 19 18 41 41 H 1.09001 * 110.87270 * 153.77125 * 20 19 18 42 42 H 1.08006 * 126.29375 * 0.02562 * 24 23 21 43 43 H 1.08003 * 126.29383 * 180.13138 * 25 24 23 44 44 H 1.07999 * 125.89187 * 179.74319 * 26 25 24 45 45 H 1.09007 * 109.46726 * 90.00360 * 28 27 23 46 46 H 1.08992 * 109.47067 * 209.99891 * 28 27 23 47 47 H 1.08996 * 109.47150 * 330.00882 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9428 0.8295 -2.6035 8 14 2.3225 -1.1198 -4.0078 9 1 1.3448 -2.1619 -4.4122 10 1 2.4873 -0.1407 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 7 2.0184 -0.6905 1.1963 13 6 1.6644 -2.0930 1.4282 14 16 2.9704 0.1144 2.2863 15 8 3.6236 -0.8818 3.0610 16 8 3.6693 1.1093 1.5507 17 7 1.9582 0.9212 3.3192 18 6 1.2890 0.3382 4.4964 19 6 0.0490 1.2320 4.7335 20 6 0.5997 2.6361 4.3699 21 6 1.5732 2.3359 3.2106 22 1 1.0785 2.5132 2.2557 23 6 2.7952 3.2101 3.3281 24 6 4.0615 2.7797 3.4997 25 6 4.8898 3.9181 3.5563 26 6 4.0970 5.0011 3.4255 27 7 2.8101 4.5728 3.2851 28 6 1.6375 5.4345 3.1155 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7081 1.1606 -3.4844 33 1 2.4608 -2.7356 1.0526 34 1 1.5343 -2.2630 2.4970 35 1 0.7350 -2.3241 0.9077 36 1 0.9839 -0.6877 4.2898 37 1 1.9491 0.3713 5.3631 38 1 -0.2681 1.1945 5.7758 39 1 -0.7668 0.9480 4.0687 40 1 1.1304 3.0732 5.2157 41 1 -0.2033 3.2944 4.0384 42 1 4.3823 1.7513 3.5770 43 1 5.9621 3.9227 3.6851 44 1 4.4247 6.0301 3.4315 45 1 1.2239 5.6817 4.0933 46 1 1.9309 6.3505 2.6030 47 1 0.8853 4.9122 2.5244 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282953308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:46 Heat of formation + Delta-G solvation = -27.903221 kcal Electronic energy + Delta-G solvation = -30344.575199 eV Core-core repulsion = 26461.896831 eV Total energy + Delta-G solvation = -3882.678368 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.23333 -39.24114 -38.33226 -37.92872 -36.89407 -34.55868 -33.77328 -31.88557 -31.61958 -30.92518 -27.96284 -27.31549 -27.16213 -26.98067 -23.76807 -22.60653 -22.29274 -21.35465 -20.61870 -19.55149 -19.02938 -18.70115 -18.14965 -17.73613 -17.16121 -16.68672 -16.21082 -16.02909 -15.35268 -15.11612 -14.88141 -14.73504 -14.69970 -14.36454 -14.16859 -13.91154 -13.83284 -13.65315 -13.45707 -13.26181 -13.20277 -13.07072 -13.01180 -12.93162 -12.86768 -12.72415 -12.61622 -12.55077 -12.26758 -12.19114 -12.17477 -12.07572 -11.89918 -11.58802 -11.18347 -10.53057 -10.17140 -9.70486 -9.42850 -8.85807 -8.14320 -6.27383 -0.42190 1.34236 1.39223 1.41622 1.51158 1.95357 2.10937 2.15885 2.41361 2.61938 3.13739 3.23354 3.58633 3.68819 3.91996 3.98830 4.05085 4.18924 4.25844 4.34731 4.51995 4.55945 4.59590 4.64064 4.72376 4.73979 4.75375 4.79402 4.90884 4.92425 4.97437 4.98829 5.04674 5.08825 5.12702 5.14081 5.28304 5.41228 5.42978 5.46817 5.59002 5.76595 5.85043 6.06682 6.12716 6.28182 6.28724 6.59176 6.79000 7.41268 8.89882 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012613 B = 0.004710 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.381751 B = 5943.703863 C = 6528.344922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.279 3.721 3 H 0.017 0.983 4 C -0.540 4.540 5 H 0.051 0.949 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.954 3.046 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.279 1.279 12 N -0.998 5.998 13 C 0.102 3.898 14 S 2.797 3.203 15 O -1.012 7.012 16 O -0.995 6.995 17 N -1.007 6.007 18 C 0.108 3.892 19 C -0.115 4.115 20 C -0.109 4.109 21 C 0.220 3.780 22 H 0.068 0.932 23 C -0.002 4.002 24 C -0.205 4.205 25 C -0.233 4.233 26 C -0.005 4.005 27 N -0.442 5.442 28 C 0.062 3.938 29 H 0.037 0.963 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.265 0.735 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.138 0.862 44 H 0.200 0.800 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.605 7.633 16.643 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.174 3.826 3 H 0.035 0.965 4 C -0.579 4.579 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.840 5.840 13 C -0.043 4.043 14 S 2.809 3.191 15 O -0.996 6.996 16 O -0.979 6.979 17 N -0.847 5.847 18 C -0.016 4.016 19 C -0.154 4.154 20 C -0.148 4.148 21 C 0.112 3.888 22 H 0.086 0.914 23 C -0.116 4.116 24 C -0.230 4.230 25 C -0.257 4.257 26 C -0.135 4.135 27 N -0.118 5.118 28 C -0.078 4.078 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.156 0.844 44 H 0.217 0.783 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.978 7.894 16.434 19.187 hybrid contribution 0.757 -0.748 -1.431 1.783 sum -5.222 7.145 15.003 17.419 Atomic orbital electron populations 1.21893 0.96411 1.00300 1.00549 1.18350 0.92427 0.90821 0.80953 0.96477 1.21628 1.31692 1.12964 0.91654 0.93057 1.25596 0.95189 0.95704 1.01495 1.69955 1.37218 1.23528 1.24350 0.85631 0.78742 0.78578 0.79138 1.19104 1.20720 1.20377 1.57747 1.70224 1.20902 1.35147 1.21359 1.01648 0.80405 1.00927 1.01257 0.73562 0.72098 0.72224 1.93493 1.73373 1.60913 1.71860 1.93626 1.71140 1.60613 1.72514 1.58921 1.66033 1.18713 1.41033 1.22263 0.94654 0.98164 0.86561 1.22754 0.95841 0.92536 1.04230 1.22736 0.97281 0.98966 0.95851 1.19657 0.90360 0.77963 1.00838 0.91379 1.20575 0.96500 0.84308 1.10237 1.20365 0.93862 0.97242 1.11556 1.21048 0.99680 0.92411 1.12560 1.22215 0.82338 1.00140 1.08781 1.43942 1.08184 1.04490 1.55211 1.22393 0.85999 0.94835 1.04559 0.94418 0.91352 0.93803 0.92579 0.94338 0.90535 0.89752 0.90101 0.91166 0.86759 0.89650 0.89915 0.87344 0.89930 0.84391 0.78297 0.88123 0.88009 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 8.96 71.98 0.64 -5.25 16 2 C 0.28 14.10 2.60 44.25 0.11 14.22 16 3 H 0.02 1.00 7.05 -2.39 -0.02 0.99 16 4 C -0.54 -30.21 8.37 25.60 0.21 -30.00 16 5 H 0.05 2.90 7.65 -2.91 -0.02 2.88 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -51.43 11.32 21.44 0.24 -51.18 16 8 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 9 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 N -1.00 -43.85 3.12 -520.44 -1.62 -45.48 16 13 C 0.10 3.76 9.44 127.77 1.21 4.96 16 14 S 2.80 122.32 4.92 -56.49 -0.28 122.04 16 15 O -1.01 -46.26 16.84 -128.00 -2.16 -48.41 16 16 O -1.00 -51.92 13.35 -128.00 -1.71 -53.63 16 17 N -1.01 -33.35 3.10 -488.52 -1.51 -34.86 16 18 C 0.11 2.56 7.05 86.78 0.61 3.18 16 19 C -0.11 -1.81 7.07 31.91 0.23 -1.58 16 20 C -0.11 -1.95 5.85 31.78 0.19 -1.77 16 21 C 0.22 6.51 2.95 44.60 0.13 6.64 16 22 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 23 C 0.00 -0.08 5.55 41.08 0.23 0.14 16 24 C -0.20 -8.10 8.16 22.14 0.18 -7.92 16 25 C -0.23 -7.87 10.86 22.14 0.24 -7.63 16 26 C 0.00 -0.12 11.43 83.21 0.95 0.83 16 27 N -0.44 -11.73 3.15 -533.25 -1.68 -13.41 16 28 C 0.06 0.97 10.36 127.77 1.32 2.29 16 29 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.07 3.41 6.07 -2.39 -0.01 3.39 16 31 H 0.04 1.82 6.66 -2.39 -0.02 1.81 16 32 H 0.26 14.16 8.31 -92.71 -0.77 13.38 16 33 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.08 2.31 7.85 -2.39 -0.02 2.29 16 35 H 0.08 2.91 6.44 -2.38 -0.02 2.90 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.08 1.42 7.84 -2.39 -0.02 1.40 16 41 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.08 3.64 6.01 -2.91 -0.02 3.62 16 43 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 44 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 45 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.08 1.32 7.77 -2.39 -0.02 1.30 16 Total: -1.00 -79.58 379.80 0.97 -78.61 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.95 Total: 20.44 kcal Atomic # 6 Polarization: -27.03 SS G_CDS: 6.71 Total: -20.32 kcal Atomic # 7 Polarization: -140.36 SS G_CDS: -4.57 Total: -144.93 kcal Atomic # 8 Polarization: -98.18 SS G_CDS: -3.86 Total: -102.04 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: 122.32 SS G_CDS: -0.28 Total: 122.04 kcal Total: -79.58 0.97 -78.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282953308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.704 kcal (2) G-P(sol) polarization free energy of solvation -79.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds