Wall clock time and date at job start Wed Apr 1 2020 00:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.50702 * 109.47168 * 240.00147 * 2 1 3 5 5 H 1.08005 * 119.99657 * 239.99927 * 4 2 1 6 6 C 1.37877 * 119.99970 * 59.99996 * 4 2 1 7 7 N 1.31512 * 120.00011 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99659 * 180.27703 * 6 4 2 9 9 H 1.48496 * 109.46887 * 179.72309 * 8 6 4 10 10 H 1.48496 * 109.46822 * 299.72121 * 8 6 4 11 11 H 1.48503 * 109.47069 * 59.72397 * 8 6 4 12 12 N 1.46496 * 109.47217 * 120.00113 * 2 1 3 13 13 C 1.46497 * 120.00093 * 63.81642 * 12 2 1 14 14 S 1.65605 * 119.99895 * 243.82055 * 12 2 1 15 15 O 1.42097 * 106.39992 * 207.45649 * 14 12 2 16 16 O 1.42098 * 106.40335 * 340.37978 * 14 12 2 17 17 N 1.65599 * 107.21793 * 93.91998 * 14 12 2 18 18 C 1.47432 * 125.64784 * 277.57846 * 17 14 12 19 19 C 1.54906 * 104.83135 * 155.83848 * 18 17 14 20 20 C 1.55150 * 101.58657 * 37.00508 * 19 18 17 21 21 C 1.47022 * 125.64949 * 97.26857 * 17 14 12 22 22 H 1.08997 * 109.88225 * 300.51143 * 21 17 14 23 23 C 1.50703 * 109.88025 * 61.67966 * 21 17 14 24 24 C 1.34845 * 125.89043 * 0.11007 * 23 21 17 25 25 C 1.40894 * 107.41340 * 179.88620 * 24 23 21 26 26 C 1.34848 * 107.41975 * 0.38302 * 25 24 23 27 27 N 1.36342 * 125.88743 * 180.42203 * 23 21 17 28 28 C 1.46503 * 125.63953 * 359.95647 * 27 23 21 29 29 H 1.09005 * 109.46921 * 53.31237 * 1 2 3 30 30 H 1.09002 * 109.47135 * 173.30854 * 1 2 3 31 31 H 1.09000 * 109.47294 * 293.31117 * 1 2 3 32 32 H 0.97000 * 119.99548 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47047 * 90.00627 * 13 12 2 34 34 H 1.09001 * 109.47199 * 210.00543 * 13 12 2 35 35 H 1.09003 * 109.47089 * 330.00284 * 13 12 2 36 36 H 1.08996 * 110.36508 * 274.67360 * 18 17 14 37 37 H 1.08999 * 110.36849 * 36.99489 * 18 17 14 38 38 H 1.08994 * 111.00651 * 155.08572 * 19 18 17 39 39 H 1.09007 * 111.00025 * 278.89458 * 19 18 17 40 40 H 1.09002 * 110.71979 * 82.86210 * 20 19 18 41 41 H 1.09000 * 110.72183 * 206.13742 * 20 19 18 42 42 H 1.07998 * 126.29662 * 0.03279 * 24 23 21 43 43 H 1.08004 * 126.28886 * 180.12631 * 25 24 23 44 44 H 1.07999 * 125.89285 * 179.80407 * 26 25 24 45 45 H 1.09000 * 109.46993 * 89.99641 * 28 27 23 46 46 H 1.08995 * 109.47473 * 209.99879 * 28 27 23 47 47 H 1.09002 * 109.46933 * 330.00442 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3156 -1.1244 -4.0080 9 1 1.8162 -0.4275 -5.2204 10 1 3.8006 -1.1250 -4.0137 11 1 1.8200 -2.5243 -4.0021 12 7 2.0183 -0.6906 1.1961 13 6 1.7347 -2.1152 1.3865 14 16 2.8909 0.1392 2.3331 15 8 3.7317 -0.8143 2.9680 16 8 3.3860 1.3041 1.6874 17 7 1.8227 0.6615 3.4856 18 6 0.9854 1.8716 3.3957 19 6 -0.2132 1.5953 4.3373 20 6 0.4719 0.8232 5.4955 21 6 1.5476 -0.0081 4.7653 22 1 1.1786 -1.0175 4.5836 23 6 2.8033 -0.0602 5.5968 24 6 4.0081 0.4298 5.2408 25 6 4.8977 0.1746 6.3031 26 6 4.2048 -0.4692 7.2642 27 7 2.9186 -0.6161 6.8364 28 6 1.8388 -1.2639 7.5852 29 1 -0.3633 0.6140 -0.8241 30 1 -0.3633 -1.0207 -0.1197 31 1 -0.3634 0.4067 0.9438 32 1 0.7081 1.1608 -3.4844 33 1 2.5339 -2.7075 0.9409 34 1 1.6716 -2.3338 2.4525 35 1 0.7876 -2.3643 0.9079 36 1 1.5422 2.7444 3.7367 37 1 0.6385 2.0178 2.3728 38 1 -0.6523 2.5268 4.6945 39 1 -0.9629 0.9765 3.8440 40 1 0.9286 1.5151 6.2032 41 1 -0.2412 0.1701 5.9986 42 1 4.2466 0.9286 4.3131 43 1 5.9437 0.4415 6.3391 44 1 4.6002 -0.8092 8.2100 45 1 1.8158 -2.3266 7.3435 46 1 2.0114 -1.1380 8.6540 47 1 0.8857 -0.8092 7.3150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282953314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:50 Heat of formation + Delta-G solvation = -4.969409 kcal Electronic energy + Delta-G solvation = -30099.544304 eV Core-core repulsion = 26217.860421 eV Total energy + Delta-G solvation = -3881.683883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.23562 -38.20858 -36.59859 -36.10418 -35.15014 -32.90834 -32.54171 -30.88594 -30.53670 -29.10760 -26.91319 -26.35779 -25.48121 -25.15738 -22.64234 -21.45771 -20.83455 -20.18998 -19.46302 -18.22927 -17.54567 -17.11799 -16.53648 -16.19473 -15.77409 -15.22473 -15.05754 -14.54724 -13.98225 -13.91542 -13.65335 -13.26259 -13.19281 -13.06455 -13.01970 -12.97978 -12.65219 -12.43125 -12.08988 -11.99968 -11.80339 -11.63748 -11.36145 -11.33610 -11.26821 -11.20896 -11.17591 -11.09900 -10.94393 -10.79749 -10.78044 -10.47791 -10.25242 -9.99009 -9.21688 -8.93223 -8.44374 -8.40257 -7.94186 -7.80405 -6.06047 -4.11865 1.18116 2.34608 2.94929 3.26562 3.31645 3.35821 3.39295 3.54539 4.12912 4.39559 4.42371 4.57900 4.63375 4.71981 4.96261 5.00602 5.10222 5.17914 5.23145 5.24741 5.25988 5.51720 5.57890 5.61834 5.73995 5.75149 5.81874 5.83155 5.92355 6.15540 6.18278 6.22418 6.36716 6.45671 6.50236 6.57145 6.67364 6.80864 6.83894 7.02451 7.18724 7.35018 7.47784 7.49651 7.65973 7.81428 8.03950 8.29233 8.90055 9.53624 11.00323 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019954 B = 0.003842 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.892674 B = 7286.596298 C = 7808.145661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.264 3.736 3 H 0.061 0.939 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.114 3.886 14 S 2.784 3.216 15 O -0.973 6.973 16 O -0.971 6.971 17 N -1.009 6.009 18 C 0.121 3.879 19 C -0.127 4.127 20 C -0.124 4.124 21 C 0.229 3.771 22 H 0.077 0.923 23 C 0.002 3.998 24 C -0.157 4.157 25 C -0.196 4.196 26 C -0.020 4.020 27 N -0.446 5.446 28 C 0.069 3.931 29 H 0.089 0.911 30 H 0.034 0.966 31 H 0.010 0.990 32 H 0.263 0.737 33 H 0.049 0.951 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.115 0.885 43 H 0.133 0.867 44 H 0.159 0.841 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.226 -1.592 20.504 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.079 0.921 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.202 1.202 12 N -0.832 5.832 13 C -0.032 4.032 14 S 2.795 3.205 15 O -0.957 6.957 16 O -0.955 6.955 17 N -0.846 5.846 18 C -0.005 4.005 19 C -0.166 4.166 20 C -0.162 4.162 21 C 0.121 3.879 22 H 0.095 0.905 23 C -0.110 4.110 24 C -0.182 4.182 25 C -0.221 4.221 26 C -0.149 4.149 27 N -0.124 5.124 28 C -0.072 4.072 29 H 0.107 0.893 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.133 0.867 43 H 0.151 0.849 44 H 0.177 0.823 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.580 -1.510 20.463 20.828 hybrid contribution 0.027 -0.671 -0.946 1.160 sum -3.554 -2.181 19.516 19.957 Atomic orbital electron populations 1.22114 0.98346 1.00668 0.99291 1.18781 0.91227 0.93228 0.80667 0.92148 1.21276 1.31779 1.13023 0.89986 0.91980 1.24901 0.94949 0.94996 0.98952 1.69864 1.36443 1.22700 1.23864 0.86561 0.79365 0.79606 0.81904 1.21196 1.20139 1.20232 1.57812 1.73210 1.17804 1.34419 1.21083 1.01932 0.81566 0.98641 1.01999 0.73357 0.73503 0.71679 1.93628 1.63348 1.62632 1.76126 1.93597 1.77386 1.49920 1.74623 1.59389 1.60488 1.35325 1.29419 1.21963 0.90583 0.87013 1.00903 1.22774 0.97365 1.00777 0.95703 1.22752 0.96554 0.98953 0.97988 1.19343 0.89905 0.96357 0.82320 0.90493 1.20447 0.97518 1.05323 0.87710 1.20373 0.92405 1.06222 0.99159 1.20820 0.99524 1.06690 0.95077 1.21654 0.83718 1.08212 1.01288 1.43618 1.08973 1.45578 1.14209 1.22054 0.90102 0.98344 0.96743 0.89286 0.94680 0.97104 0.92665 0.93267 0.93792 0.91091 0.91418 0.89966 0.90026 0.90288 0.90355 0.90426 0.86746 0.84873 0.82340 0.91136 0.90093 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.79 37.16 0.33 -2.93 16 2 C 0.26 6.56 2.66 -69.08 -0.18 6.38 16 3 H 0.06 1.68 6.76 -51.93 -0.35 1.32 16 4 C -0.52 -14.21 8.32 -34.44 -0.29 -14.50 16 5 H 0.06 1.69 7.43 -52.48 -0.39 1.30 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.84 11.40 55.43 0.63 -24.20 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.99 -21.33 3.12 -115.86 -0.36 -21.69 16 13 C 0.11 2.12 9.37 59.85 0.56 2.68 16 14 S 2.78 58.34 4.91 -107.50 -0.53 57.81 16 15 O -0.97 -21.40 13.88 -57.17 -0.79 -22.20 16 16 O -0.97 -23.81 16.26 -57.17 -0.93 -24.74 16 17 N -1.01 -16.44 3.09 -105.64 -0.33 -16.77 16 18 C 0.12 1.69 7.06 -2.53 -0.02 1.67 16 19 C -0.13 -1.28 7.08 -24.59 -0.17 -1.45 16 20 C -0.12 -1.20 5.31 -24.90 -0.13 -1.33 16 21 C 0.23 3.10 3.16 -68.11 -0.22 2.88 16 22 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 23 C 0.00 0.03 5.53 -81.79 -0.45 -0.42 16 24 C -0.16 -2.75 8.17 -39.78 -0.32 -3.08 16 25 C -0.20 -2.96 10.86 -39.78 -0.43 -3.39 16 26 C -0.02 -0.24 11.43 -16.75 -0.19 -0.44 16 27 N -0.45 -5.45 3.15 -119.90 -0.38 -5.82 16 28 C 0.07 0.51 10.89 59.85 0.65 1.16 16 29 H 0.09 2.20 6.28 -51.93 -0.33 1.88 16 30 H 0.03 0.76 7.07 -51.93 -0.37 0.39 16 31 H 0.01 0.20 8.05 -51.93 -0.42 -0.22 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.05 0.93 8.04 -51.93 -0.42 0.51 16 34 H 0.04 0.69 7.89 -51.93 -0.41 0.28 16 35 H 0.07 1.26 6.77 -51.93 -0.35 0.91 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 41 H 0.08 0.55 7.17 -51.93 -0.37 0.18 16 42 H 0.11 2.24 6.06 -52.49 -0.32 1.92 16 43 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 44 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.50 5.71 -51.93 -0.30 0.21 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -34.39 377.00 -10.35 -44.74 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.36 Total: 2.03 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -0.97 Total: -11.10 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: -0.43 Total: -68.49 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -1.72 Total: -46.94 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 58.34 SS G_CDS: -0.53 Total: 57.81 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.39 -10.35 -44.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282953314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.770 kcal (2) G-P(sol) polarization free energy of solvation -34.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds