Wall clock time and date at job start Wed Apr 1 2020 00:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.50702 * 109.47168 * 240.00147 * 2 1 3 5 5 H 1.08005 * 119.99657 * 239.99927 * 4 2 1 6 6 C 1.37877 * 119.99970 * 59.99996 * 4 2 1 7 7 N 1.31512 * 120.00011 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99659 * 180.27703 * 6 4 2 9 9 H 1.48496 * 109.46887 * 179.72309 * 8 6 4 10 10 H 1.48496 * 109.46822 * 299.72121 * 8 6 4 11 11 H 1.48503 * 109.47069 * 59.72397 * 8 6 4 12 12 N 1.46496 * 109.47217 * 120.00113 * 2 1 3 13 13 C 1.46497 * 120.00093 * 63.81642 * 12 2 1 14 14 S 1.65605 * 119.99895 * 243.82055 * 12 2 1 15 15 O 1.42097 * 106.39992 * 207.45649 * 14 12 2 16 16 O 1.42098 * 106.40335 * 340.37978 * 14 12 2 17 17 N 1.65599 * 107.21793 * 93.91998 * 14 12 2 18 18 C 1.47432 * 125.64784 * 277.57846 * 17 14 12 19 19 C 1.54906 * 104.83135 * 155.83848 * 18 17 14 20 20 C 1.55150 * 101.58657 * 37.00508 * 19 18 17 21 21 C 1.47022 * 125.64949 * 97.26857 * 17 14 12 22 22 H 1.08997 * 109.88225 * 300.51143 * 21 17 14 23 23 C 1.50703 * 109.88025 * 61.67966 * 21 17 14 24 24 C 1.34845 * 125.89043 * 0.11007 * 23 21 17 25 25 C 1.40894 * 107.41340 * 179.88620 * 24 23 21 26 26 C 1.34848 * 107.41975 * 0.38302 * 25 24 23 27 27 N 1.36342 * 125.88743 * 180.42203 * 23 21 17 28 28 C 1.46503 * 125.63953 * 359.95647 * 27 23 21 29 29 H 1.09005 * 109.46921 * 53.31237 * 1 2 3 30 30 H 1.09002 * 109.47135 * 173.30854 * 1 2 3 31 31 H 1.09000 * 109.47294 * 293.31117 * 1 2 3 32 32 H 0.97000 * 119.99548 * 180.02562 * 7 6 4 33 33 H 1.08997 * 109.47047 * 90.00627 * 13 12 2 34 34 H 1.09001 * 109.47199 * 210.00543 * 13 12 2 35 35 H 1.09003 * 109.47089 * 330.00284 * 13 12 2 36 36 H 1.08996 * 110.36508 * 274.67360 * 18 17 14 37 37 H 1.08999 * 110.36849 * 36.99489 * 18 17 14 38 38 H 1.08994 * 111.00651 * 155.08572 * 19 18 17 39 39 H 1.09007 * 111.00025 * 278.89458 * 19 18 17 40 40 H 1.09002 * 110.71979 * 82.86210 * 20 19 18 41 41 H 1.09000 * 110.72183 * 206.13742 * 20 19 18 42 42 H 1.07998 * 126.29662 * 0.03279 * 24 23 21 43 43 H 1.08004 * 126.28886 * 180.12631 * 25 24 23 44 44 H 1.07999 * 125.89285 * 179.80407 * 26 25 24 45 45 H 1.09000 * 109.46993 * 89.99641 * 28 27 23 46 46 H 1.08995 * 109.47473 * 209.99879 * 28 27 23 47 47 H 1.09002 * 109.46933 * 330.00442 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3156 -1.1244 -4.0080 9 1 1.8162 -0.4275 -5.2204 10 1 3.8006 -1.1250 -4.0137 11 1 1.8200 -2.5243 -4.0021 12 7 2.0183 -0.6906 1.1961 13 6 1.7347 -2.1152 1.3865 14 16 2.8909 0.1392 2.3331 15 8 3.7317 -0.8143 2.9680 16 8 3.3860 1.3041 1.6874 17 7 1.8227 0.6615 3.4856 18 6 0.9854 1.8716 3.3957 19 6 -0.2132 1.5953 4.3373 20 6 0.4719 0.8232 5.4955 21 6 1.5476 -0.0081 4.7653 22 1 1.1786 -1.0175 4.5836 23 6 2.8033 -0.0602 5.5968 24 6 4.0081 0.4298 5.2408 25 6 4.8977 0.1746 6.3031 26 6 4.2048 -0.4692 7.2642 27 7 2.9186 -0.6161 6.8364 28 6 1.8388 -1.2639 7.5852 29 1 -0.3633 0.6140 -0.8241 30 1 -0.3633 -1.0207 -0.1197 31 1 -0.3634 0.4067 0.9438 32 1 0.7081 1.1608 -3.4844 33 1 2.5339 -2.7075 0.9409 34 1 1.6716 -2.3338 2.4525 35 1 0.7876 -2.3643 0.9079 36 1 1.5422 2.7444 3.7367 37 1 0.6385 2.0178 2.3728 38 1 -0.6523 2.5268 4.6945 39 1 -0.9629 0.9765 3.8440 40 1 0.9286 1.5151 6.2032 41 1 -0.2412 0.1701 5.9986 42 1 4.2466 0.9286 4.3131 43 1 5.9437 0.4415 6.3391 44 1 4.6002 -0.8092 8.2100 45 1 1.8158 -2.3266 7.3435 46 1 2.0114 -1.1380 8.6540 47 1 0.8857 -0.8092 7.3150 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282953314.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:49 Heat of formation + Delta-G solvation = -28.201676 kcal Electronic energy + Delta-G solvation = -30100.551730 eV Core-core repulsion = 26217.860421 eV Total energy + Delta-G solvation = -3882.691310 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24473 -39.25571 -38.36642 -37.90354 -36.91188 -34.54998 -33.78293 -31.89278 -31.61836 -30.97179 -27.93830 -27.25556 -27.15648 -27.02008 -23.78981 -22.60778 -22.34183 -21.34086 -20.62258 -19.55600 -19.02766 -18.67781 -18.17347 -17.72599 -17.19670 -16.64792 -16.19033 -16.03691 -15.33400 -15.18529 -14.88826 -14.71701 -14.61962 -14.43845 -14.18380 -13.94332 -13.80943 -13.63579 -13.43556 -13.38254 -13.15047 -13.07410 -13.04886 -12.91030 -12.83492 -12.77402 -12.62597 -12.55578 -12.27039 -12.19467 -12.17775 -12.00738 -11.89311 -11.60914 -11.15678 -10.54100 -10.19203 -9.70739 -9.43100 -8.86757 -8.14088 -6.27521 -0.43518 1.33441 1.41090 1.43534 1.50620 1.94289 2.10142 2.15497 2.41638 2.61570 3.14427 3.21160 3.57214 3.67019 3.91787 3.96566 4.07092 4.18660 4.23773 4.35555 4.52730 4.56112 4.58732 4.63572 4.69574 4.75033 4.77766 4.80853 4.90157 4.92001 4.97757 4.99359 5.03981 5.08828 5.13088 5.16267 5.25751 5.41648 5.41929 5.46693 5.59784 5.74854 5.86253 6.04932 6.10860 6.27191 6.28547 6.59841 6.79275 7.41185 8.90776 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019954 B = 0.003842 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.892674 B = 7286.596298 C = 7808.145661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.269 3.731 3 H 0.021 0.979 4 C -0.544 4.544 5 H 0.055 0.945 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.279 1.279 10 H -0.281 1.281 11 H -0.264 1.264 12 N -0.997 5.997 13 C 0.110 3.890 14 S 2.798 3.202 15 O -0.990 6.990 16 O -1.021 7.021 17 N -1.006 6.006 18 C 0.107 3.893 19 C -0.114 4.114 20 C -0.110 4.110 21 C 0.218 3.782 22 H 0.090 0.910 23 C -0.001 4.001 24 C -0.209 4.209 25 C -0.235 4.235 26 C 0.000 4.000 27 N -0.440 5.440 28 C 0.058 3.942 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.135 0.865 44 H 0.201 0.799 45 H 0.080 0.920 46 H 0.110 0.890 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 -3.285 23.400 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.165 3.835 3 H 0.038 0.962 4 C -0.583 4.583 5 H 0.073 0.927 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.189 1.189 12 N -0.839 5.839 13 C -0.036 4.036 14 S 2.810 3.190 15 O -0.974 6.974 16 O -1.005 7.005 17 N -0.846 5.846 18 C -0.018 4.018 19 C -0.152 4.152 20 C -0.149 4.149 21 C 0.111 3.889 22 H 0.108 0.892 23 C -0.114 4.114 24 C -0.234 4.234 25 C -0.259 4.259 26 C -0.131 4.131 27 N -0.116 5.116 28 C -0.082 4.082 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.095 0.905 43 H 0.153 0.847 44 H 0.218 0.782 45 H 0.099 0.901 46 H 0.128 0.872 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.052 -3.233 23.375 24.361 hybrid contribution 0.838 -0.122 -1.733 1.929 sum -5.215 -3.355 21.642 22.513 Atomic orbital electron populations 1.21874 0.96340 1.00726 0.99880 1.18471 0.92604 0.91238 0.81237 0.96167 1.21587 1.32092 1.13146 0.91480 0.92701 1.25639 0.95121 0.95697 1.01605 1.69980 1.37016 1.23560 1.24503 0.85657 0.78374 0.79174 0.78718 1.20376 1.20664 1.18907 1.57709 1.73199 1.19073 1.33910 1.21263 1.01967 0.79662 1.00684 1.01210 0.73533 0.72542 0.71735 1.93590 1.64491 1.63071 1.76223 1.93520 1.78961 1.51811 1.76215 1.58922 1.59982 1.36145 1.29593 1.22231 0.92160 0.86135 1.01269 1.22779 0.95451 1.02408 0.94608 1.22781 0.95686 0.98949 0.97450 1.19795 0.90550 0.97596 0.80981 0.89198 1.20551 0.97042 1.04856 0.88991 1.20379 0.94958 1.08999 0.99074 1.21047 1.00078 1.08939 0.95844 1.22198 0.83484 1.05754 1.01625 1.43934 1.10025 1.44349 1.13262 1.22485 0.89227 0.98593 0.97862 0.91716 0.93964 0.94138 0.92525 0.94299 0.90773 0.90097 0.91763 0.91808 0.87282 0.89306 0.90112 0.86281 0.90517 0.84721 0.78210 0.90126 0.87175 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 8.79 71.98 0.63 -5.18 16 2 C 0.27 13.80 2.66 44.25 0.12 13.92 16 3 H 0.02 1.21 6.76 -2.39 -0.02 1.19 16 4 C -0.54 -30.47 8.32 25.60 0.21 -30.25 16 5 H 0.05 3.07 7.43 -2.91 -0.02 3.05 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -51.98 11.40 21.45 0.24 -51.73 16 8 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 12 N -1.00 -43.98 3.12 -520.46 -1.62 -45.60 16 13 C 0.11 4.02 9.37 127.77 1.20 5.22 16 14 S 2.80 122.90 4.91 -56.49 -0.28 122.62 16 15 O -0.99 -45.43 13.88 -128.00 -1.78 -47.20 16 16 O -1.02 -54.12 16.26 -128.00 -2.08 -56.20 16 17 N -1.01 -32.96 3.09 -488.13 -1.51 -34.46 16 18 C 0.11 2.97 7.06 86.85 0.61 3.58 16 19 C -0.11 -1.89 7.08 31.98 0.23 -1.67 16 20 C -0.11 -1.66 5.31 31.78 0.17 -1.49 16 21 C 0.22 5.44 3.16 44.59 0.14 5.58 16 22 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 23 C 0.00 -0.02 5.53 41.08 0.23 0.21 16 24 C -0.21 -7.64 8.17 22.14 0.18 -7.46 16 25 C -0.23 -7.21 10.86 22.14 0.24 -6.97 16 26 C 0.00 0.00 11.43 83.21 0.95 0.95 16 27 N -0.44 -9.38 3.15 -533.25 -1.68 -11.05 16 28 C 0.06 0.56 10.89 127.77 1.39 1.95 16 29 H 0.06 3.25 6.28 -2.38 -0.01 3.24 16 30 H 0.04 1.80 7.07 -2.39 -0.02 1.78 16 31 H 0.04 1.53 8.05 -2.39 -0.02 1.51 16 32 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 33 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 34 H 0.07 2.23 7.89 -2.39 -0.02 2.21 16 35 H 0.08 2.78 6.77 -2.39 -0.02 2.76 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.98 8.05 -2.39 -0.02 1.97 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.08 1.24 7.85 -2.39 -0.02 1.22 16 41 H 0.12 0.90 7.17 -2.39 -0.02 0.89 16 42 H 0.08 3.30 6.06 -2.91 -0.02 3.29 16 43 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 44 H 0.20 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.10 0.63 5.71 -2.39 -0.01 0.61 16 Total: -1.00 -80.94 377.00 1.03 -79.91 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.96 Total: 17.71 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: 6.75 Total: -20.08 kcal Atomic # 7 Polarization: -138.29 SS G_CDS: -4.57 Total: -142.85 kcal Atomic # 8 Polarization: -99.55 SS G_CDS: -3.86 Total: -103.41 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 122.90 SS G_CDS: -0.28 Total: 122.62 kcal Total: -80.94 1.03 -79.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282953314.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.710 kcal (2) G-P(sol) polarization free energy of solvation -80.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds