Wall clock time and date at job start Wed Apr 1 2020 00:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46909 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46868 * 209.99959 * 8 6 4 11 11 H 1.48495 * 109.46964 * 330.00013 * 8 6 4 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 C 1.46503 * 120.00249 * 60.00308 * 12 2 1 14 14 S 1.65603 * 119.99847 * 240.00000 * 12 2 1 15 15 O 1.42105 * 106.40178 * 203.54115 * 14 12 2 16 16 O 1.42100 * 106.40428 * 336.46445 * 14 12 2 17 17 N 1.65603 * 107.21853 * 90.00274 * 14 12 2 18 18 C 1.46504 * 119.99815 * 64.99851 * 17 14 12 19 19 C 1.50696 * 109.46955 * 165.00318 * 18 17 14 20 20 C 1.38128 * 120.03843 * 259.99967 * 19 18 17 21 21 C 1.38259 * 120.07646 * 179.97438 * 20 19 18 22 22 C 1.38307 * 120.14917 * 0.04888 * 21 20 19 23 23 C 1.38081 * 120.08034 * 359.97046 * 22 21 20 24 24 C 1.38894 * 120.03750 * 79.72372 * 19 18 17 25 25 N 1.39669 * 120.07682 * 0.02562 * 24 19 18 26 26 C 1.46892 * 111.00197 * 120.00031 * 25 24 19 27 27 C 1.46908 * 111.00038 * 243.95594 * 25 24 19 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 31 31 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.46807 * 89.99603 * 13 12 2 33 33 H 1.08998 * 109.47196 * 209.99887 * 13 12 2 34 34 H 1.09000 * 109.46808 * 330.00267 * 13 12 2 35 35 H 0.96992 * 120.00147 * 244.99971 * 17 14 12 36 36 H 1.09004 * 109.47272 * 285.00087 * 18 17 14 37 37 H 1.09001 * 109.47328 * 45.00178 * 18 17 14 38 38 H 1.08000 * 119.96006 * 359.97265 * 20 19 18 39 39 H 1.08004 * 119.92820 * 180.02562 * 21 20 19 40 40 H 1.08006 * 119.95892 * 179.97438 * 22 21 20 41 41 H 1.07999 * 120.04310 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.47286 * 60.00059 * 26 25 24 43 43 H 1.09001 * 109.47682 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.47170 * 300.00568 * 26 25 24 45 45 H 1.09003 * 109.46810 * 59.99727 * 27 25 24 46 46 H 1.09002 * 109.47035 * 179.97438 * 27 25 24 47 47 H 1.08999 * 109.46765 * 299.99702 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1830 1.5749 17 7 1.9607 0.8089 3.3999 18 6 1.1510 -0.0355 4.2817 19 6 0.6168 0.7945 5.4204 20 6 1.2340 0.7529 6.6554 21 6 0.7449 1.5144 7.7005 22 6 -0.3641 2.3195 7.5138 23 6 -0.9863 2.3657 6.2820 24 6 -0.4934 1.6067 5.2277 25 7 -1.1168 1.6553 3.9789 26 6 -2.5188 1.2273 4.0734 27 6 -1.0147 2.9979 3.3913 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 0.7095 1.1620 -3.4843 32 1 2.4158 -2.7377 0.9715 33 1 1.6239 -2.2854 2.5001 34 1 0.6905 -2.3003 0.9844 35 1 1.9054 1.7748 3.4683 36 1 0.3188 -0.4569 3.7177 37 1 1.7670 -0.8426 4.6782 38 1 2.0997 0.1246 6.8048 39 1 1.2297 1.4803 8.6651 40 1 -0.7438 2.9129 8.3325 41 1 -1.8519 2.9949 6.1367 42 1 -3.0545 1.8857 4.7572 43 1 -2.9807 1.2750 3.0872 44 1 -2.5620 0.2039 4.4460 45 1 0.0358 3.2616 3.2681 46 1 -1.5079 3.0075 2.4193 47 1 -1.4958 3.7204 4.0504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283032974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:56 Heat of formation + Delta-G solvation = -55.431719 kcal Electronic energy + Delta-G solvation = -29390.464236 eV Core-core repulsion = 25506.592143 eV Total energy + Delta-G solvation = -3883.872093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.00770 -38.29073 -37.83499 -37.43522 -36.84564 -36.21426 -34.48164 -31.91679 -30.85195 -30.75558 -28.46771 -27.22634 -26.98883 -26.61134 -25.33954 -22.71876 -22.51129 -21.62413 -20.23547 -18.82267 -18.52875 -18.32444 -17.76260 -17.22858 -16.79428 -16.70656 -16.21702 -15.93622 -15.70121 -15.14099 -15.10453 -14.83358 -14.73339 -14.50692 -14.20161 -13.83013 -13.70434 -13.48737 -13.34054 -13.24124 -13.13002 -13.09240 -13.07402 -12.95311 -12.88784 -12.74130 -12.57682 -12.53251 -12.22501 -12.11831 -12.08285 -12.01476 -11.82510 -11.07847 -10.47759 -10.38717 -9.82104 -9.62573 -9.53158 -9.36753 -8.07830 -6.20814 -0.30598 0.36661 0.43573 1.43163 1.45263 1.54752 2.12380 2.45922 2.66453 2.86409 2.95900 3.20103 3.48473 3.80130 3.95251 4.12000 4.16591 4.22689 4.40201 4.41460 4.48200 4.48721 4.64644 4.69852 4.73060 4.78981 4.85306 4.88872 4.94710 5.01360 5.03220 5.11596 5.12711 5.15611 5.24778 5.25449 5.48386 5.57216 5.62954 5.66406 5.77711 5.92649 5.94289 5.96555 6.10027 6.25106 6.36512 6.49089 6.86689 7.47606 8.95934 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.003736 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.823413 B = 7492.336318 C = 8467.008137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.277 3.723 3 H 0.022 0.978 4 C -0.538 4.538 5 H 0.054 0.946 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.994 5.994 13 C 0.104 3.896 14 S 2.797 3.203 15 O -1.010 7.010 16 O -1.020 7.020 17 N -1.106 6.106 18 C 0.172 3.828 19 C -0.090 4.090 20 C -0.106 4.106 21 C -0.126 4.126 22 C -0.105 4.105 23 C -0.157 4.157 24 C 0.094 3.906 25 N -0.520 5.520 26 C 0.031 3.969 27 C 0.032 3.968 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.263 0.737 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.415 0.585 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.129 0.871 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.400 1.687 20.884 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.173 3.827 3 H 0.040 0.960 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.836 5.836 13 C -0.041 4.041 14 S 2.806 3.194 15 O -0.994 6.994 16 O -1.004 7.004 17 N -0.868 5.868 18 C 0.047 3.953 19 C -0.093 4.093 20 C -0.125 4.125 21 C -0.143 4.143 22 C -0.124 4.124 23 C -0.177 4.177 24 C 0.000 4.000 25 N -0.241 5.241 26 C -0.115 4.115 27 C -0.115 4.115 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.249 0.751 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.147 0.853 42 H 0.058 0.942 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.273 1.290 20.370 21.668 hybrid contribution -0.448 0.725 -0.763 1.144 sum -7.721 2.015 19.607 21.169 Atomic orbital electron populations 1.21825 0.96560 0.99890 1.00438 1.18346 0.92372 0.91068 0.80922 0.96023 1.21677 1.31544 1.12933 0.91641 0.92774 1.25603 0.95294 0.95722 1.01512 1.69981 1.37355 1.23589 1.24176 0.85634 0.78747 0.78458 0.79233 1.19490 1.20963 1.20117 1.57516 1.69875 1.20927 1.35258 1.21334 1.01625 0.80448 1.00712 1.01174 0.73623 0.72283 0.72307 1.93504 1.69965 1.61251 1.74633 1.93541 1.76067 1.57465 1.73371 1.55709 1.61710 1.17582 1.51791 1.20039 0.94424 0.91562 0.89251 1.19766 0.95809 0.98809 0.94873 1.21325 0.99590 0.99438 0.92141 1.21458 0.96808 0.96428 0.99644 1.21367 0.95507 0.98406 0.97116 1.21771 1.01383 1.00484 0.94026 1.18848 0.95005 0.96620 0.89541 1.59509 1.16770 1.27160 1.20631 1.22441 0.86089 1.00808 1.02196 1.22412 1.02117 0.87328 0.99650 0.94258 0.94227 0.91861 0.92754 0.94179 0.90365 0.90370 0.75099 0.90281 0.90100 0.84600 0.83505 0.83708 0.85276 0.94195 0.90741 0.91232 0.92339 0.90861 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.95 71.98 0.64 -5.10 16 2 C 0.28 13.80 2.62 44.25 0.12 13.91 16 3 H 0.02 1.24 6.91 -2.39 -0.02 1.22 16 4 C -0.54 -29.61 8.37 25.60 0.21 -29.39 16 5 H 0.05 2.98 7.65 -2.91 -0.02 2.95 16 6 C 0.02 1.02 5.30 84.66 0.45 1.47 16 7 N -0.91 -51.50 11.32 21.45 0.24 -51.26 16 8 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 N -0.99 -41.50 3.12 -520.45 -1.62 -43.12 16 13 C 0.10 3.65 9.53 127.77 1.22 4.87 16 14 S 2.80 112.10 6.10 -56.49 -0.34 111.76 16 15 O -1.01 -41.96 16.68 -128.00 -2.14 -44.09 16 16 O -1.02 -49.87 16.70 -128.00 -2.14 -52.01 16 17 N -1.11 -33.79 6.05 -190.78 -1.15 -34.94 16 18 C 0.17 4.39 6.00 85.63 0.51 4.91 16 19 C -0.09 -2.00 5.29 -19.73 -0.10 -2.10 16 20 C -0.11 -1.98 9.66 22.25 0.21 -1.76 16 21 C -0.13 -1.88 10.04 22.29 0.22 -1.65 16 22 C -0.11 -1.52 10.04 22.25 0.22 -1.30 16 23 C -0.16 -2.70 8.57 22.40 0.19 -2.51 16 24 C 0.09 2.00 4.71 38.22 0.18 2.18 16 25 N -0.52 -11.48 4.14 -745.07 -3.08 -14.56 16 26 C 0.03 0.57 9.34 127.69 1.19 1.76 16 27 C 0.03 0.68 9.39 127.69 1.20 1.88 16 28 H 0.04 1.65 6.66 -2.39 -0.02 1.64 16 29 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 31 H 0.26 14.14 8.31 -92.70 -0.77 13.37 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 2.21 7.79 -2.39 -0.02 2.19 16 34 H 0.08 2.61 6.43 -2.39 -0.02 2.60 16 35 H 0.41 12.05 8.63 -96.75 -0.84 11.21 16 36 H 0.08 2.04 7.81 -2.38 -0.02 2.02 16 37 H 0.08 1.95 7.61 -2.39 -0.02 1.93 16 38 H 0.14 2.26 8.04 -2.91 -0.02 2.23 16 39 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 41 H 0.13 1.89 7.02 -2.91 -0.02 1.87 16 42 H 0.04 0.61 7.11 -2.39 -0.02 0.59 16 43 H 0.07 1.36 8.12 -2.39 -0.02 1.34 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 1.38 8.13 -2.39 -0.02 1.37 16 46 H 0.07 1.63 8.12 -2.39 -0.02 1.61 16 47 H 0.04 0.76 7.36 -2.39 -0.02 0.74 16 Total: -1.00 -69.85 391.09 -1.60 -71.45 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.13 Total: 23.75 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 6.48 Total: -12.84 kcal Atomic # 7 Polarization: -138.27 SS G_CDS: -5.62 Total: -143.88 kcal Atomic # 8 Polarization: -91.83 SS G_CDS: -4.27 Total: -96.10 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 112.10 SS G_CDS: -0.34 Total: 111.76 kcal Total: -69.85 -1.60 -71.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283032974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.021 kcal (2) G-P(sol) polarization free energy of solvation -69.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds