Wall clock time and date at job start Wed Apr 1 2020 00:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46702 * 2 1 4 4 C 1.50700 * 109.46947 * 120.00048 * 2 1 3 5 5 H 1.07996 * 119.99737 * 84.99398 * 4 2 1 6 6 C 1.37877 * 119.99654 * 264.99449 * 4 2 1 7 7 N 1.31518 * 119.99824 * 176.65690 * 6 4 2 8 8 Si 1.86800 * 120.00265 * 356.65666 * 6 4 2 9 9 H 1.48495 * 109.47053 * 274.93002 * 8 6 4 10 10 H 1.48503 * 109.46924 * 34.92919 * 8 6 4 11 11 H 1.48500 * 109.46958 * 154.92899 * 8 6 4 12 12 N 1.46493 * 109.46908 * 240.00169 * 2 1 3 13 13 C 1.46507 * 120.00223 * 299.99448 * 12 2 1 14 14 S 1.65603 * 120.00136 * 120.00316 * 12 2 1 15 15 O 1.42095 * 106.40435 * 203.53796 * 14 12 2 16 16 O 1.42097 * 106.39895 * 336.45290 * 14 12 2 17 17 N 1.65600 * 107.21877 * 89.99358 * 14 12 2 18 18 C 1.46497 * 119.99949 * 65.00624 * 17 14 12 19 19 C 1.50702 * 109.47013 * 164.99987 * 18 17 14 20 20 C 1.38125 * 120.03318 * 259.99463 * 19 18 17 21 21 C 1.38261 * 120.07331 * 179.97438 * 20 19 18 22 22 C 1.38314 * 120.15161 * 0.04592 * 21 20 19 23 23 C 1.38085 * 120.06962 * 359.97424 * 22 21 20 24 24 C 1.38892 * 120.03830 * 79.72317 * 19 18 17 25 25 N 1.39672 * 120.07444 * 0.02562 * 24 19 18 26 26 C 1.46905 * 110.99381 * 120.00505 * 25 24 19 27 27 C 1.46892 * 111.00136 * 243.95599 * 25 24 19 28 28 H 1.09002 * 109.46922 * 185.57046 * 1 2 3 29 29 H 1.09000 * 109.47325 * 305.56845 * 1 2 3 30 30 H 1.08996 * 109.47174 * 65.57210 * 1 2 3 31 31 H 0.96993 * 120.00438 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.46548 * 90.00367 * 13 12 2 33 33 H 1.08997 * 109.47353 * 210.00340 * 13 12 2 34 34 H 1.08997 * 109.46631 * 330.00765 * 13 12 2 35 35 H 0.97001 * 120.00209 * 244.99959 * 17 14 12 36 36 H 1.09005 * 109.46792 * 284.99509 * 18 17 14 37 37 H 1.08997 * 109.47280 * 44.99235 * 18 17 14 38 38 H 1.07994 * 119.96586 * 359.97438 * 20 19 18 39 39 H 1.08003 * 119.93032 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.96454 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.03450 * 180.02562 * 23 22 21 42 42 H 1.08994 * 109.47653 * 60.00399 * 26 25 24 43 43 H 1.09007 * 109.46450 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.47403 * 299.99324 * 26 25 24 45 45 H 1.09002 * 109.46898 * 60.00399 * 27 25 24 46 46 H 1.08998 * 109.47124 * 180.02562 * 27 25 24 47 47 H 1.08999 * 109.47377 * 299.99975 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.1354 -1.7855 1.2290 6 6 2.3604 0.0121 2.3580 7 7 2.7359 -0.6122 3.4529 8 14 2.2714 1.8778 2.3305 9 1 3.5395 2.4258 1.7857 10 1 1.1377 2.3067 1.4725 11 1 2.0662 2.3840 3.7114 12 7 2.0183 -0.6905 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 16 2.9705 0.1142 -2.2862 15 8 2.8228 -0.5645 -3.5259 16 8 2.6904 1.4973 -2.1193 17 7 4.5438 -0.1042 -1.8179 18 6 5.1358 -1.4440 -1.8415 19 6 6.6349 -1.3327 -1.7351 20 6 7.4178 -1.4329 -2.8686 21 6 8.7932 -1.3304 -2.7719 22 6 9.3900 -1.1282 -1.5407 23 6 8.6132 -1.0275 -0.4035 24 6 7.2305 -1.1235 -0.4978 25 7 6.4414 -1.0166 0.6497 26 6 6.7844 -2.0615 1.6236 27 6 6.5603 0.3198 1.2476 28 1 -0.3633 -1.0228 0.0998 29 1 -0.3634 0.5978 0.8359 30 1 -0.3633 0.4250 -0.9356 31 1 2.9670 -0.1039 4.2461 32 1 0.7377 -2.1444 -1.9993 33 1 2.4629 -2.5819 -1.9864 34 1 1.5296 -2.5968 -0.4708 35 1 5.0734 0.6551 -1.5281 36 1 4.7541 -2.0247 -1.0017 37 1 4.8737 -1.9407 -2.7757 38 1 6.9552 -1.5915 -3.8314 39 1 9.4032 -1.4087 -3.6598 40 1 10.4647 -1.0489 -1.4686 41 1 9.0798 -0.8691 0.5576 42 1 7.8316 -1.9625 1.9091 43 1 6.1549 -1.9553 2.5071 44 1 6.6207 -3.0423 1.1771 45 1 6.2337 1.0703 0.5277 46 1 5.9363 0.3756 2.1396 47 1 7.5994 0.5051 1.5196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283032975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:00 Heat of formation + Delta-G solvation = -32.342878 kcal Electronic energy + Delta-G solvation = -30025.474489 eV Core-core repulsion = 26142.603604 eV Total energy + Delta-G solvation = -3882.870886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.00834 -36.69831 -36.36852 -36.22752 -35.24305 -34.96355 -32.41682 -30.87077 -29.87035 -29.78248 -27.31574 -25.70156 -25.42414 -25.10068 -24.30547 -21.68562 -20.66344 -20.57780 -18.71727 -17.48450 -17.25746 -16.70931 -16.44046 -15.88441 -15.71957 -15.29250 -14.88074 -14.65948 -14.20074 -14.13345 -13.64935 -13.50461 -13.16870 -13.10513 -12.73555 -12.51426 -12.47560 -12.46915 -12.10515 -11.96163 -11.89326 -11.77450 -11.66937 -11.53300 -11.40480 -11.37586 -11.13714 -11.07488 -10.98245 -10.74950 -10.63988 -10.31157 -9.79243 -9.34985 -8.99909 -8.88465 -8.61321 -8.59376 -8.20485 -7.97203 -6.14920 -4.13138 1.11986 1.30199 1.47722 3.24963 3.33318 3.42384 3.49672 3.78819 4.06147 4.21120 4.36142 4.76735 4.86889 4.96253 5.05909 5.18784 5.24669 5.33679 5.47964 5.49628 5.55281 5.63922 5.75789 5.82248 5.83104 5.85084 6.14157 6.15863 6.19601 6.23514 6.24502 6.26976 6.38712 6.43570 6.46633 6.50304 6.62288 6.64857 6.74823 6.84795 7.00977 7.11022 7.25030 7.38683 7.56020 7.59383 7.74743 8.46254 8.90941 9.47925 10.96757 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.005767 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.890880 B = 4853.716846 C = 6364.062841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.235 3.765 3 H 0.054 0.946 4 C -0.506 4.506 5 H 0.083 0.917 6 C 0.085 3.915 7 N -0.888 5.888 8 Si 0.854 3.146 9 H -0.271 1.271 10 H -0.262 1.262 11 H -0.288 1.288 12 N -0.984 5.984 13 C 0.106 3.894 14 S 2.778 3.222 15 O -0.999 6.999 16 O -0.990 6.990 17 N -1.115 6.115 18 C 0.175 3.825 19 C -0.074 4.074 20 C -0.099 4.099 21 C -0.130 4.130 22 C -0.110 4.110 23 C -0.154 4.154 24 C 0.111 3.889 25 N -0.495 5.495 26 C 0.034 3.966 27 C 0.036 3.964 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.026 0.974 31 H 0.263 0.737 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.410 0.590 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.021 0.979 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.843 -2.918 -7.377 13.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.131 3.869 3 H 0.072 0.928 4 C -0.546 4.546 5 H 0.101 0.899 6 C -0.119 4.119 7 N -0.526 5.526 8 Si 0.681 3.319 9 H -0.197 1.197 10 H -0.186 1.186 11 H -0.214 1.214 12 N -0.826 5.826 13 C -0.040 4.040 14 S 2.788 3.212 15 O -0.983 6.983 16 O -0.974 6.974 17 N -0.873 5.873 18 C 0.049 3.951 19 C -0.076 4.076 20 C -0.119 4.119 21 C -0.148 4.148 22 C -0.129 4.129 23 C -0.174 4.174 24 C 0.016 3.984 25 N -0.216 5.216 26 C -0.113 4.113 27 C -0.111 4.111 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.242 0.758 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.039 0.961 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 9.953 -2.632 -8.139 13.124 hybrid contribution 1.361 1.275 1.006 2.119 sum 11.314 -1.357 -7.132 13.443 Atomic orbital electron populations 1.22182 0.98181 1.01053 0.98986 1.19067 0.91539 0.92909 0.83368 0.92806 1.21117 1.43151 0.95910 0.94416 0.89927 1.24856 0.94144 0.97431 0.95435 1.69884 1.45142 1.35504 1.02022 0.87231 0.80031 0.87308 0.77327 1.19661 1.18606 1.21385 1.57845 1.64645 1.21295 1.38797 1.21210 0.98945 0.81977 1.01901 1.01925 0.72746 0.73044 0.73513 1.93532 1.86096 1.76289 1.42354 1.93564 1.83905 1.32884 1.87083 1.55833 1.31573 1.14711 1.85168 1.19924 0.88964 0.84115 1.02078 1.19849 0.95558 1.00350 0.91847 1.21105 0.93600 0.99192 0.97980 1.21105 0.94775 1.01391 0.97517 1.21001 0.99461 0.99838 0.92562 1.21669 0.94431 1.02468 0.98875 1.18876 0.89702 0.97914 0.91884 1.59493 1.52802 1.04311 1.04955 1.22415 0.98383 0.94489 0.95989 1.22396 0.99179 0.88816 1.00692 0.92879 0.92845 0.95476 0.92737 0.94031 0.93007 0.90071 0.75761 0.89413 0.90960 0.85511 0.86130 0.86418 0.86404 0.96097 0.89812 0.91492 0.91625 0.89952 0.96014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.09 37.16 0.34 -2.67 16 2 C 0.23 5.34 2.26 -69.08 -0.16 5.18 16 3 H 0.05 1.32 4.13 -51.93 -0.21 1.10 16 4 C -0.51 -12.68 8.73 -34.44 -0.30 -12.98 16 5 H 0.08 2.21 6.82 -52.49 -0.36 1.86 16 6 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -24.35 13.96 55.43 0.77 -23.58 16 8 Si 0.85 20.46 26.90 -169.99 -4.57 15.88 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.26 -6.22 6.73 56.52 0.38 -5.84 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.98 -19.74 3.12 -115.85 -0.36 -20.10 16 13 C 0.11 1.82 9.45 59.85 0.57 2.39 16 14 S 2.78 54.62 6.09 -107.50 -0.66 53.97 16 15 O -1.00 -20.31 16.68 -57.18 -0.95 -21.26 16 16 O -0.99 -22.34 16.70 -57.18 -0.95 -23.29 16 17 N -1.11 -18.89 6.05 -11.66 -0.07 -18.96 16 18 C 0.18 2.65 6.00 -5.19 -0.03 2.62 16 19 C -0.07 -1.02 5.29 -104.42 -0.55 -1.57 16 20 C -0.10 -1.18 9.66 -39.61 -0.38 -1.57 16 21 C -0.13 -1.36 10.04 -39.54 -0.40 -1.76 16 22 C -0.11 -1.17 10.04 -39.61 -0.40 -1.56 16 23 C -0.15 -1.88 8.57 -39.38 -0.34 -2.22 16 24 C 0.11 1.56 4.71 -83.79 -0.39 1.17 16 25 N -0.50 -7.70 4.14 -186.86 -0.77 -8.48 16 26 C 0.03 0.49 9.34 60.07 0.56 1.05 16 27 C 0.04 0.56 9.39 60.06 0.56 1.12 16 28 H 0.05 1.04 7.86 -51.93 -0.41 0.63 16 29 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.79 7.79 -51.93 -0.40 0.38 16 34 H 0.08 1.43 6.56 -51.93 -0.34 1.09 16 35 H 0.41 6.71 8.63 -34.47 -0.30 6.41 16 36 H 0.09 1.43 7.81 -51.93 -0.41 1.03 16 37 H 0.07 1.01 7.61 -51.93 -0.40 0.61 16 38 H 0.13 1.32 8.04 -52.49 -0.42 0.90 16 39 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 1.33 7.02 -52.48 -0.37 0.96 16 42 H 0.02 0.26 7.11 -51.93 -0.37 -0.11 16 43 H 0.08 1.34 8.12 -51.93 -0.42 0.92 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 1.04 8.13 -51.93 -0.42 0.61 16 46 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 47 H 0.02 0.29 7.36 -51.93 -0.38 -0.09 16 LS Contribution 390.51 15.07 5.88 5.88 Total: -1.00 -30.38 390.51 -10.02 -40.40 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.31 Total: 8.22 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -1.02 Total: -8.69 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -0.43 Total: -71.11 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -1.91 Total: -44.55 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.57 Total: 15.88 kcal Atomic # 16 Polarization: 54.62 SS G_CDS: -0.66 Total: 53.97 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.38 -10.02 -40.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283032975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.052 kcal (2) G-P(sol) polarization free energy of solvation -30.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds