Wall clock time and date at job start Wed Apr 1 2020 00:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46702 * 2 1 4 4 C 1.50700 * 109.46947 * 120.00048 * 2 1 3 5 5 H 1.07996 * 119.99737 * 84.99398 * 4 2 1 6 6 C 1.37877 * 119.99654 * 264.99449 * 4 2 1 7 7 N 1.31518 * 119.99824 * 176.65690 * 6 4 2 8 8 Si 1.86800 * 120.00265 * 356.65666 * 6 4 2 9 9 H 1.48495 * 109.47053 * 274.93002 * 8 6 4 10 10 H 1.48503 * 109.46924 * 34.92919 * 8 6 4 11 11 H 1.48500 * 109.46958 * 154.92899 * 8 6 4 12 12 N 1.46493 * 109.46908 * 240.00169 * 2 1 3 13 13 C 1.46507 * 120.00223 * 299.99448 * 12 2 1 14 14 S 1.65603 * 120.00136 * 120.00316 * 12 2 1 15 15 O 1.42095 * 106.40435 * 203.53796 * 14 12 2 16 16 O 1.42097 * 106.39895 * 336.45290 * 14 12 2 17 17 N 1.65600 * 107.21877 * 89.99358 * 14 12 2 18 18 C 1.46497 * 119.99949 * 65.00624 * 17 14 12 19 19 C 1.50702 * 109.47013 * 164.99987 * 18 17 14 20 20 C 1.38125 * 120.03318 * 259.99463 * 19 18 17 21 21 C 1.38261 * 120.07331 * 179.97438 * 20 19 18 22 22 C 1.38314 * 120.15161 * 0.04592 * 21 20 19 23 23 C 1.38085 * 120.06962 * 359.97424 * 22 21 20 24 24 C 1.38892 * 120.03830 * 79.72317 * 19 18 17 25 25 N 1.39672 * 120.07444 * 0.02562 * 24 19 18 26 26 C 1.46905 * 110.99381 * 120.00505 * 25 24 19 27 27 C 1.46892 * 111.00136 * 243.95599 * 25 24 19 28 28 H 1.09002 * 109.46922 * 185.57046 * 1 2 3 29 29 H 1.09000 * 109.47325 * 305.56845 * 1 2 3 30 30 H 1.08996 * 109.47174 * 65.57210 * 1 2 3 31 31 H 0.96993 * 120.00438 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.46548 * 90.00367 * 13 12 2 33 33 H 1.08997 * 109.47353 * 210.00340 * 13 12 2 34 34 H 1.08997 * 109.46631 * 330.00765 * 13 12 2 35 35 H 0.97001 * 120.00209 * 244.99959 * 17 14 12 36 36 H 1.09005 * 109.46792 * 284.99509 * 18 17 14 37 37 H 1.08997 * 109.47280 * 44.99235 * 18 17 14 38 38 H 1.07994 * 119.96586 * 359.97438 * 20 19 18 39 39 H 1.08003 * 119.93032 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.96454 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.03450 * 180.02562 * 23 22 21 42 42 H 1.08994 * 109.47653 * 60.00399 * 26 25 24 43 43 H 1.09007 * 109.46450 * 180.02562 * 26 25 24 44 44 H 1.09000 * 109.47403 * 299.99324 * 26 25 24 45 45 H 1.09002 * 109.46898 * 60.00399 * 27 25 24 46 46 H 1.08998 * 109.47124 * 180.02562 * 27 25 24 47 47 H 1.08999 * 109.47377 * 299.99975 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.1354 -1.7855 1.2290 6 6 2.3604 0.0121 2.3580 7 7 2.7359 -0.6122 3.4529 8 14 2.2714 1.8778 2.3305 9 1 3.5395 2.4258 1.7857 10 1 1.1377 2.3067 1.4725 11 1 2.0662 2.3840 3.7114 12 7 2.0183 -0.6905 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 16 2.9705 0.1142 -2.2862 15 8 2.8228 -0.5645 -3.5259 16 8 2.6904 1.4973 -2.1193 17 7 4.5438 -0.1042 -1.8179 18 6 5.1358 -1.4440 -1.8415 19 6 6.6349 -1.3327 -1.7351 20 6 7.4178 -1.4329 -2.8686 21 6 8.7932 -1.3304 -2.7719 22 6 9.3900 -1.1282 -1.5407 23 6 8.6132 -1.0275 -0.4035 24 6 7.2305 -1.1235 -0.4978 25 7 6.4414 -1.0166 0.6497 26 6 6.7844 -2.0615 1.6236 27 6 6.5603 0.3198 1.2476 28 1 -0.3633 -1.0228 0.0998 29 1 -0.3634 0.5978 0.8359 30 1 -0.3633 0.4250 -0.9356 31 1 2.9670 -0.1039 4.2461 32 1 0.7377 -2.1444 -1.9993 33 1 2.4629 -2.5819 -1.9864 34 1 1.5296 -2.5968 -0.4708 35 1 5.0734 0.6551 -1.5281 36 1 4.7541 -2.0247 -1.0017 37 1 4.8737 -1.9407 -2.7757 38 1 6.9552 -1.5915 -3.8314 39 1 9.4032 -1.4087 -3.6598 40 1 10.4647 -1.0489 -1.4686 41 1 9.0798 -0.8691 0.5576 42 1 7.8316 -1.9625 1.9091 43 1 6.1549 -1.9553 2.5071 44 1 6.6207 -3.0423 1.1771 45 1 6.2337 1.0703 0.5277 46 1 5.9363 0.3756 2.1396 47 1 7.5994 0.5051 1.5196 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283032975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:59 Heat of formation + Delta-G solvation = -53.417909 kcal Electronic energy + Delta-G solvation = -30026.388371 eV Core-core repulsion = 26142.603604 eV Total energy + Delta-G solvation = -3883.784767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00476 -38.35077 -37.92191 -37.43688 -36.90047 -36.19752 -34.37144 -31.91629 -31.60473 -30.75486 -28.51682 -27.26574 -26.94034 -26.61979 -25.35644 -22.71023 -22.37296 -21.62078 -20.26925 -19.23536 -18.68299 -18.26672 -17.86005 -17.30747 -16.77492 -16.70349 -16.15503 -15.94224 -15.71808 -15.21449 -15.12216 -14.78748 -14.66289 -14.42860 -14.38768 -14.17149 -13.82621 -13.55570 -13.45084 -13.36784 -13.29113 -13.18610 -13.11135 -13.02348 -12.97044 -12.90174 -12.61908 -12.52744 -12.42344 -12.12386 -12.05827 -11.94262 -11.73908 -11.20215 -10.64287 -10.36186 -9.81936 -9.64258 -9.53446 -9.32377 -8.19556 -6.18995 -0.31117 0.36841 0.43411 1.32509 1.38609 1.46940 2.02982 2.37300 2.61122 2.84889 2.95794 3.19213 3.43509 3.80739 3.95350 4.08425 4.13922 4.20044 4.33523 4.38358 4.44737 4.46543 4.52166 4.59217 4.69122 4.76128 4.79479 4.80422 4.85802 4.91966 4.94404 4.96286 5.02339 5.05799 5.15888 5.18351 5.37467 5.48664 5.52277 5.57623 5.63093 5.65293 5.92903 5.93981 5.96165 6.16308 6.45069 6.53647 6.84609 7.44274 8.94933 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011065 B = 0.005767 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.890880 B = 4853.716846 C = 6364.062841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.237 3.763 3 H 0.039 0.961 4 C -0.494 4.494 5 H 0.060 0.940 6 C 0.048 3.952 7 N -0.923 5.923 8 Si 0.889 3.111 9 H -0.269 1.269 10 H -0.257 1.257 11 H -0.286 1.286 12 N -0.990 5.990 13 C 0.101 3.899 14 S 2.793 3.207 15 O -1.003 7.003 16 O -1.019 7.019 17 N -1.108 6.108 18 C 0.176 3.824 19 C -0.091 4.091 20 C -0.102 4.102 21 C -0.123 4.123 22 C -0.104 4.104 23 C -0.159 4.159 24 C 0.093 3.907 25 N -0.515 5.515 26 C 0.041 3.959 27 C 0.041 3.959 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.262 0.738 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.412 0.588 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.141 0.859 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.125 0.875 42 H 0.041 0.959 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.474 -3.006 -9.393 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.132 3.868 3 H 0.057 0.943 4 C -0.534 4.534 5 H 0.078 0.922 6 C -0.152 4.152 7 N -0.563 5.563 8 Si 0.715 3.285 9 H -0.194 1.194 10 H -0.181 1.181 11 H -0.212 1.212 12 N -0.831 5.831 13 C -0.045 4.045 14 S 2.802 3.198 15 O -0.986 6.986 16 O -1.004 7.004 17 N -0.869 5.869 18 C 0.050 3.950 19 C -0.093 4.093 20 C -0.121 4.121 21 C -0.141 4.141 22 C -0.123 4.123 23 C -0.179 4.179 24 C -0.002 4.002 25 N -0.235 5.235 26 C -0.106 4.106 27 C -0.105 4.105 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.246 0.754 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.159 0.841 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.143 0.857 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.571 -2.730 -10.165 15.642 hybrid contribution 0.941 1.207 1.535 2.168 sum 12.512 -1.523 -8.630 15.276 Atomic orbital electron populations 1.22135 0.96631 1.01862 0.99719 1.18899 0.92739 0.91940 0.83240 0.94306 1.21171 1.42118 0.94880 0.95260 0.92219 1.25293 0.94454 1.00055 0.95367 1.69968 1.47094 1.36565 1.02632 0.86649 0.80169 0.84300 0.77357 1.19424 1.18110 1.21162 1.57683 1.65202 1.22404 1.37841 1.21388 1.00585 0.80453 1.02032 1.01344 0.73021 0.72130 0.73291 1.93523 1.86465 1.76205 1.42437 1.93521 1.84673 1.34723 1.87443 1.55655 1.30557 1.15775 1.84873 1.19969 0.90281 0.82772 1.01934 1.19806 0.94654 1.02198 0.92689 1.21319 0.94353 0.98687 0.97785 1.21472 0.94366 0.99620 0.98658 1.21360 1.00843 0.98118 0.91930 1.21772 0.93628 1.02494 1.00021 1.18926 0.90514 0.99544 0.91179 1.59386 1.54252 1.04140 1.05757 1.22299 0.98981 0.94384 0.94899 1.22267 0.99865 0.89129 0.99278 0.91855 0.93261 0.93828 0.92827 0.92260 0.91066 0.90951 0.75425 0.91201 0.89644 0.84130 0.83086 0.83570 0.85714 0.94023 0.92430 0.91342 0.92357 0.92761 0.93798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.86 9.09 71.98 0.65 -5.20 16 2 C 0.24 10.71 2.26 44.25 0.10 10.81 16 3 H 0.04 1.90 4.13 -2.39 -0.01 1.89 16 4 C -0.49 -25.22 8.73 25.60 0.22 -25.00 16 5 H 0.06 3.29 6.82 -2.91 -0.02 3.27 16 6 C 0.05 2.59 5.47 84.65 0.46 3.05 16 7 N -0.92 -52.14 13.96 21.45 0.30 -51.84 16 8 Si 0.89 42.40 26.90 68.60 1.85 44.25 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.26 -11.97 6.73 99.48 0.67 -11.30 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 N -0.99 -39.12 3.12 -520.44 -1.62 -40.74 16 13 C 0.10 3.36 9.45 127.77 1.21 4.57 16 14 S 2.79 107.57 6.09 -56.49 -0.34 107.22 16 15 O -1.00 -39.11 16.68 -128.00 -2.14 -41.24 16 16 O -1.02 -45.49 16.70 -128.00 -2.14 -47.63 16 17 N -1.11 -37.05 6.05 -190.79 -1.15 -38.20 16 18 C 0.18 5.20 6.00 85.63 0.51 5.72 16 19 C -0.09 -2.40 5.29 -19.73 -0.10 -2.50 16 20 C -0.10 -2.15 9.66 22.25 0.21 -1.93 16 21 C -0.12 -2.11 10.04 22.29 0.22 -1.88 16 22 C -0.10 -1.82 10.04 22.25 0.22 -1.60 16 23 C -0.16 -3.51 8.57 22.40 0.19 -3.32 16 24 C 0.09 2.51 4.71 38.21 0.18 2.69 16 25 N -0.51 -16.19 4.14 -745.10 -3.08 -19.27 16 26 C 0.04 1.20 9.34 127.69 1.19 2.39 16 27 C 0.04 1.31 9.39 127.69 1.20 2.51 16 28 H 0.06 2.41 7.86 -2.39 -0.02 2.39 16 29 H 0.05 2.02 7.94 -2.39 -0.02 2.00 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 2.07 7.79 -2.39 -0.02 2.05 16 34 H 0.07 2.54 6.56 -2.39 -0.02 2.53 16 35 H 0.41 13.45 8.63 -96.74 -0.84 12.62 16 36 H 0.07 2.31 7.81 -2.38 -0.02 2.29 16 37 H 0.09 2.26 7.61 -2.39 -0.02 2.24 16 38 H 0.14 2.50 8.04 -2.91 -0.02 2.48 16 39 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 40 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.12 2.52 7.02 -2.91 -0.02 2.50 16 42 H 0.04 1.01 7.11 -2.39 -0.02 0.99 16 43 H 0.06 1.95 8.12 -2.38 -0.02 1.93 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.06 1.88 8.13 -2.39 -0.02 1.86 16 46 H 0.05 1.99 8.12 -2.39 -0.02 1.97 16 47 H 0.04 1.15 7.36 -2.39 -0.02 1.13 16 Total: -1.00 -65.12 390.51 -1.75 -66.87 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: 0.10 Total: 30.28 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 6.48 Total: -9.68 kcal Atomic # 7 Polarization: -144.50 SS G_CDS: -5.56 Total: -150.06 kcal Atomic # 8 Polarization: -84.60 SS G_CDS: -4.27 Total: -88.87 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.85 Total: 44.25 kcal Atomic # 16 Polarization: 107.57 SS G_CDS: -0.34 Total: 107.22 kcal Total: -65.12 -1.75 -66.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283032975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.450 kcal (2) G-P(sol) polarization free energy of solvation -65.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds