Wall clock time and date at job start Wed Apr 1 2020 00:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47366 * 2 1 4 4 C 1.50700 * 109.47010 * 239.99978 * 2 1 3 5 5 H 1.08006 * 120.00073 * 239.99874 * 4 2 1 6 6 C 1.37880 * 120.00202 * 60.00289 * 4 2 1 7 7 N 1.31518 * 119.99758 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00154 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47386 * 59.99474 * 8 6 4 10 10 H 1.48494 * 109.47140 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46941 * 299.99836 * 8 6 4 12 12 N 1.46504 * 109.47069 * 120.00150 * 2 1 3 13 13 C 1.46496 * 119.99899 * 59.99800 * 12 2 1 14 14 S 1.65599 * 119.99572 * 240.00111 * 12 2 1 15 15 O 1.42101 * 106.40675 * 336.45698 * 14 12 2 16 16 O 1.42104 * 106.40036 * 203.54002 * 14 12 2 17 17 N 1.65596 * 107.22080 * 90.00139 * 14 12 2 18 18 C 1.46501 * 120.00059 * 64.99159 * 17 14 12 19 19 C 1.50699 * 109.47046 * 165.00240 * 18 17 14 20 20 C 1.38311 * 119.96542 * 270.02520 * 19 18 17 21 21 C 1.38266 * 120.15052 * 179.97438 * 20 19 18 22 22 C 1.38123 * 120.07577 * 359.74818 * 21 20 19 23 23 C 1.38893 * 119.92137 * 0.48472 * 22 21 20 24 24 N 1.39675 * 120.06980 * 179.79253 * 23 22 21 25 25 C 1.46507 * 119.99622 * 179.72195 * 24 23 22 26 26 C 1.46498 * 120.00353 * 359.44307 * 24 23 22 27 27 C 1.38080 * 119.96474 * 90.00204 * 19 18 17 28 28 H 1.09006 * 109.46693 * 59.99904 * 1 2 3 29 29 H 1.08997 * 109.46848 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47190 * 300.00080 * 1 2 3 31 31 H 0.96996 * 119.99345 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47538 * 269.99829 * 13 12 2 33 33 H 1.09001 * 109.47021 * 30.00171 * 13 12 2 34 34 H 1.08999 * 109.47041 * 150.00255 * 13 12 2 35 35 H 0.96999 * 119.99924 * 245.00272 * 17 14 12 36 36 H 1.09001 * 109.46807 * 45.00714 * 18 17 14 37 37 H 1.08999 * 109.47303 * 285.00200 * 18 17 14 38 38 H 1.08001 * 119.92073 * 359.97438 * 20 19 18 39 39 H 1.07995 * 119.95964 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.03594 * 180.27150 * 22 21 20 41 41 H 1.09001 * 109.47091 * 90.00293 * 25 24 23 42 42 H 1.09004 * 109.46622 * 209.99851 * 25 24 23 43 43 H 1.08997 * 109.47201 * 329.99553 * 25 24 23 44 44 H 1.09001 * 109.46777 * 60.00310 * 26 24 23 45 45 H 1.08996 * 109.47313 * 179.97438 * 26 24 23 46 46 H 1.08998 * 109.47521 * 300.00365 * 26 24 23 47 47 H 1.08008 * 120.03420 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1204 -4.0080 9 1 1.8259 -2.5203 -4.0078 10 1 1.8271 -0.4199 -5.2204 11 1 3.8065 -1.1210 -4.0082 12 7 2.0184 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.5795 1.1830 1.5749 16 8 3.7119 -0.8789 2.9814 17 7 1.9608 0.8090 3.3998 18 6 1.1509 -0.0353 4.2816 19 6 0.6168 0.7948 5.4204 20 6 1.3470 0.9161 6.5887 21 6 0.8609 1.6771 7.6357 22 6 -0.3540 2.3234 7.5160 23 6 -1.0921 2.1998 6.3459 24 7 -2.3230 2.8484 6.2231 25 6 -3.0974 2.7219 4.9859 26 6 -2.8425 3.6502 7.3337 27 6 -0.6008 1.4340 5.2960 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.7083 1.1608 -3.4844 32 1 0.7376 -2.1444 1.9993 33 1 1.5295 -2.5968 0.4708 34 1 2.4628 -2.5819 1.9863 35 1 1.9054 1.7750 3.4681 36 1 1.7670 -0.8424 4.6781 37 1 0.3188 -0.4566 3.7177 38 1 2.2991 0.4151 6.6834 39 1 1.4334 1.7694 8.5467 40 1 -0.7311 2.9212 8.3325 41 1 -3.7638 1.8626 5.0607 42 1 -3.6863 3.6261 4.8319 43 1 -2.4182 2.5830 4.1448 44 1 -2.1425 4.4545 7.5597 45 1 -3.8065 4.0757 7.0549 46 1 -2.9649 3.0174 8.2127 47 1 -1.1706 1.3389 4.3834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283062717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:03 Heat of formation + Delta-G solvation = -36.973797 kcal Electronic energy + Delta-G solvation = -28336.977554 eV Core-core repulsion = 24453.905857 eV Total energy + Delta-G solvation = -3883.071697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.83681 -36.90465 -36.56349 -36.12062 -35.17863 -34.75590 -32.55698 -31.11959 -30.13719 -29.08069 -28.50605 -25.55164 -25.33938 -25.13949 -24.96195 -21.80420 -20.81913 -20.51535 -18.74430 -17.62940 -17.16776 -16.78223 -16.30601 -16.02634 -15.68788 -15.56095 -15.27361 -14.99367 -14.46883 -14.22667 -14.03206 -13.42800 -13.30558 -13.27551 -12.93092 -12.86941 -12.62985 -12.57292 -12.36299 -12.18229 -11.99562 -11.78643 -11.68174 -11.45628 -11.31718 -11.30776 -11.20020 -10.88657 -10.85953 -10.80544 -10.45542 -10.20608 -10.04304 -9.95517 -9.29967 -9.22134 -8.90995 -8.43721 -7.95136 -7.44491 -6.06137 -4.12514 1.09430 1.44389 1.55628 2.91897 3.31100 3.35487 3.38743 3.53148 3.86481 4.19475 4.41402 4.58376 4.71945 4.77882 4.99293 5.02797 5.05767 5.10298 5.25548 5.31220 5.33734 5.36099 5.38160 5.46039 5.47966 5.60382 5.73104 5.80080 5.87967 6.04943 6.13996 6.16764 6.38533 6.44509 6.63892 6.68542 6.75554 6.79974 6.86013 7.04682 7.05549 7.21286 7.32803 7.51946 7.64757 7.81196 8.06448 8.29232 8.89207 9.52957 10.99537 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.003080 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.644024 B = 9089.595373 C =10330.348509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.989 5.989 13 C 0.095 3.905 14 S 2.780 3.220 15 O -0.974 6.974 16 O -0.997 6.997 17 N -1.128 6.128 18 C 0.162 3.838 19 C -0.047 4.047 20 C -0.159 4.159 21 C -0.076 4.076 22 C -0.193 4.193 23 C 0.209 3.791 24 N -0.640 5.640 25 C 0.091 3.909 26 C 0.098 3.902 27 C -0.178 4.178 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.009 0.991 31 H 0.263 0.737 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.413 0.587 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.048 0.952 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.052 0.948 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.691 2.791 19.792 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.831 5.831 13 C -0.052 4.052 14 S 2.788 3.212 15 O -0.958 6.958 16 O -0.981 6.981 17 N -0.887 5.887 18 C 0.036 3.964 19 C -0.049 4.049 20 C -0.180 4.180 21 C -0.095 4.095 22 C -0.216 4.216 23 C 0.108 3.892 24 N -0.353 5.353 25 C -0.052 4.052 26 C -0.045 4.045 27 C -0.201 4.201 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.246 0.754 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.980 2.841 19.597 21.349 hybrid contribution -0.337 0.035 -0.831 0.898 sum -8.317 2.877 18.765 20.727 Atomic orbital electron populations 1.22100 0.98273 0.99676 1.00464 1.18709 0.91256 0.93010 0.80442 0.92398 1.21309 1.31610 1.13029 0.90097 0.91955 1.24904 0.94965 0.95013 0.98978 1.69853 1.36493 1.22708 1.23840 0.86558 0.79368 0.79557 0.81914 1.20248 1.21244 1.20159 1.57656 1.69905 1.19830 1.35754 1.21328 0.98694 0.82454 1.02688 1.01918 0.73640 0.73153 0.72441 1.93615 1.74359 1.55979 1.71863 1.93520 1.69251 1.60799 1.74489 1.56240 1.62351 1.17434 1.52626 1.20095 0.95000 0.92116 0.89194 1.19598 0.93720 0.96882 0.94711 1.20902 1.00711 1.02727 0.93656 1.20858 0.94860 0.95521 0.98260 1.20630 0.97140 1.06329 0.97477 1.17780 0.85457 0.92013 0.93943 1.46307 1.18994 1.53926 1.16037 1.21696 0.95769 1.01284 0.86437 1.21560 0.98945 0.94584 0.89421 1.20651 0.98029 1.02521 0.98858 0.89022 0.94875 0.97146 0.92680 0.94519 0.89846 0.91877 0.75440 0.89810 0.91071 0.86050 0.86159 0.86401 0.93384 0.91595 0.90910 0.92942 0.90998 0.92987 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.97 37.16 0.33 -2.92 16 2 C 0.27 6.54 2.62 -69.08 -0.18 6.35 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -13.97 7.99 -34.44 -0.28 -14.25 16 5 H 0.06 1.66 7.33 -52.48 -0.38 1.27 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.70 11.32 55.43 0.63 -24.08 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 N -0.99 -20.33 3.12 -115.85 -0.36 -20.69 16 13 C 0.09 1.66 9.65 59.84 0.58 2.24 16 14 S 2.78 54.69 6.14 -107.50 -0.66 54.03 16 15 O -0.97 -22.97 16.70 -57.17 -0.95 -23.93 16 16 O -1.00 -20.64 16.21 -57.17 -0.93 -21.56 16 17 N -1.13 -17.22 6.05 -11.66 -0.07 -17.29 16 18 C 0.16 2.12 6.37 -5.19 -0.03 2.09 16 19 C -0.05 -0.57 5.27 -104.65 -0.55 -1.13 16 20 C -0.16 -1.83 9.70 -39.54 -0.38 -2.21 16 21 C -0.08 -0.78 10.04 -39.61 -0.40 -1.18 16 22 C -0.19 -1.98 9.31 -39.38 -0.37 -2.34 16 23 C 0.21 2.32 6.55 -83.79 -0.55 1.78 16 24 N -0.64 -6.01 3.41 -187.55 -0.64 -6.64 16 25 C 0.09 0.74 10.16 59.85 0.61 1.34 16 26 C 0.10 0.65 9.40 59.85 0.56 1.22 16 27 C -0.18 -2.11 8.86 -39.38 -0.35 -2.45 16 28 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 29 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.54 7.02 -51.93 -0.36 1.17 16 34 H 0.06 1.04 7.02 -51.93 -0.36 0.68 16 35 H 0.41 5.86 8.64 -34.47 -0.30 5.57 16 36 H 0.08 1.07 7.69 -51.93 -0.40 0.67 16 37 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 0.99 6.73 -52.49 -0.35 0.64 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.42 7.92 -51.93 -0.41 0.01 16 43 H 0.07 0.64 6.20 -51.93 -0.32 0.32 16 44 H 0.05 0.34 7.93 -51.93 -0.41 -0.08 16 45 H 0.07 0.36 7.80 -51.93 -0.40 -0.05 16 46 H 0.05 0.32 7.97 -51.93 -0.41 -0.09 16 47 H 0.13 1.44 6.15 -52.48 -0.32 1.11 16 LS Contribution 389.99 15.07 5.88 5.88 Total: -1.00 -32.94 389.99 -10.42 -43.36 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.19 Total: 4.67 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -1.10 Total: -9.83 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -0.44 Total: -68.70 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.88 Total: -45.49 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 54.69 SS G_CDS: -0.66 Total: 54.03 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.94 -10.42 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283062717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.384 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds