Wall clock time and date at job start Wed Apr 1 2020 00:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47366 * 2 1 4 4 C 1.50700 * 109.47010 * 239.99978 * 2 1 3 5 5 H 1.08006 * 120.00073 * 239.99874 * 4 2 1 6 6 C 1.37880 * 120.00202 * 60.00289 * 4 2 1 7 7 N 1.31518 * 119.99758 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00154 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47386 * 59.99474 * 8 6 4 10 10 H 1.48494 * 109.47140 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46941 * 299.99836 * 8 6 4 12 12 N 1.46504 * 109.47069 * 120.00150 * 2 1 3 13 13 C 1.46496 * 119.99899 * 59.99800 * 12 2 1 14 14 S 1.65599 * 119.99572 * 240.00111 * 12 2 1 15 15 O 1.42101 * 106.40675 * 336.45698 * 14 12 2 16 16 O 1.42104 * 106.40036 * 203.54002 * 14 12 2 17 17 N 1.65596 * 107.22080 * 90.00139 * 14 12 2 18 18 C 1.46501 * 120.00059 * 64.99159 * 17 14 12 19 19 C 1.50699 * 109.47046 * 165.00240 * 18 17 14 20 20 C 1.38311 * 119.96542 * 270.02520 * 19 18 17 21 21 C 1.38266 * 120.15052 * 179.97438 * 20 19 18 22 22 C 1.38123 * 120.07577 * 359.74818 * 21 20 19 23 23 C 1.38893 * 119.92137 * 0.48472 * 22 21 20 24 24 N 1.39675 * 120.06980 * 179.79253 * 23 22 21 25 25 C 1.46507 * 119.99622 * 179.72195 * 24 23 22 26 26 C 1.46498 * 120.00353 * 359.44307 * 24 23 22 27 27 C 1.38080 * 119.96474 * 90.00204 * 19 18 17 28 28 H 1.09006 * 109.46693 * 59.99904 * 1 2 3 29 29 H 1.08997 * 109.46848 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47190 * 300.00080 * 1 2 3 31 31 H 0.96996 * 119.99345 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47538 * 269.99829 * 13 12 2 33 33 H 1.09001 * 109.47021 * 30.00171 * 13 12 2 34 34 H 1.08999 * 109.47041 * 150.00255 * 13 12 2 35 35 H 0.96999 * 119.99924 * 245.00272 * 17 14 12 36 36 H 1.09001 * 109.46807 * 45.00714 * 18 17 14 37 37 H 1.08999 * 109.47303 * 285.00200 * 18 17 14 38 38 H 1.08001 * 119.92073 * 359.97438 * 20 19 18 39 39 H 1.07995 * 119.95964 * 179.97438 * 21 20 19 40 40 H 1.08000 * 120.03594 * 180.27150 * 22 21 20 41 41 H 1.09001 * 109.47091 * 90.00293 * 25 24 23 42 42 H 1.09004 * 109.46622 * 209.99851 * 25 24 23 43 43 H 1.08997 * 109.47201 * 329.99553 * 25 24 23 44 44 H 1.09001 * 109.46777 * 60.00310 * 26 24 23 45 45 H 1.08996 * 109.47313 * 179.97438 * 26 24 23 46 46 H 1.08998 * 109.47521 * 300.00365 * 26 24 23 47 47 H 1.08008 * 120.03420 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3214 -1.1204 -4.0080 9 1 1.8259 -2.5203 -4.0078 10 1 1.8271 -0.4199 -5.2204 11 1 3.8065 -1.1210 -4.0082 12 7 2.0184 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.5795 1.1830 1.5749 16 8 3.7119 -0.8789 2.9814 17 7 1.9608 0.8090 3.3998 18 6 1.1509 -0.0353 4.2816 19 6 0.6168 0.7948 5.4204 20 6 1.3470 0.9161 6.5887 21 6 0.8609 1.6771 7.6357 22 6 -0.3540 2.3234 7.5160 23 6 -1.0921 2.1998 6.3459 24 7 -2.3230 2.8484 6.2231 25 6 -3.0974 2.7219 4.9859 26 6 -2.8425 3.6502 7.3337 27 6 -0.6008 1.4340 5.2960 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.7083 1.1608 -3.4844 32 1 0.7376 -2.1444 1.9993 33 1 1.5295 -2.5968 0.4708 34 1 2.4628 -2.5819 1.9863 35 1 1.9054 1.7750 3.4681 36 1 1.7670 -0.8424 4.6781 37 1 0.3188 -0.4566 3.7177 38 1 2.2991 0.4151 6.6834 39 1 1.4334 1.7694 8.5467 40 1 -0.7311 2.9212 8.3325 41 1 -3.7638 1.8626 5.0607 42 1 -3.6863 3.6261 4.8319 43 1 -2.4182 2.5830 4.1448 44 1 -2.1425 4.4545 7.5597 45 1 -3.8065 4.0757 7.0549 46 1 -2.9649 3.0174 8.2127 47 1 -1.1706 1.3389 4.3834 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283062717.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:02 Heat of formation + Delta-G solvation = -59.204986 kcal Electronic energy + Delta-G solvation = -28337.941571 eV Core-core repulsion = 24453.905857 eV Total energy + Delta-G solvation = -3884.035714 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.63491 -38.33435 -37.88747 -37.60434 -36.87545 -35.79793 -34.50236 -32.02455 -30.92573 -30.89374 -29.14553 -27.21980 -26.98972 -26.36553 -25.65321 -22.66048 -22.55719 -21.37105 -20.26010 -18.87882 -18.59448 -18.43705 -17.85597 -17.21883 -16.78001 -16.68532 -16.37089 -15.94653 -15.85653 -15.25362 -15.13847 -14.87208 -14.79315 -14.41251 -14.21175 -13.80154 -13.77398 -13.53008 -13.44726 -13.39109 -13.15104 -13.13027 -13.05719 -12.99577 -12.97827 -12.70856 -12.67616 -12.60275 -12.27336 -12.16532 -12.10797 -11.88460 -11.70618 -11.15874 -10.70814 -10.51897 -10.46036 -9.78300 -9.61330 -8.18156 -8.10375 -6.23641 -0.34673 0.48720 0.70949 1.43657 1.45911 1.52628 2.09305 2.27620 2.44433 2.64294 3.00254 3.17974 3.45616 3.72783 3.98932 4.13751 4.15454 4.27031 4.38410 4.44968 4.47989 4.51254 4.56471 4.71250 4.78199 4.79465 4.80491 4.86110 4.90498 4.93934 4.97098 5.03540 5.07935 5.12281 5.19263 5.29476 5.37626 5.62672 5.62858 5.70973 5.79277 5.89318 5.96405 6.04734 6.20601 6.32019 6.37848 6.57839 6.83721 7.44911 8.93603 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.003080 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.644024 B = 9089.595373 C =10330.348509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H 0.023 0.977 4 C -0.540 4.540 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.280 1.280 12 N -0.995 5.995 13 C 0.089 3.911 14 S 2.797 3.203 15 O -1.018 7.018 16 O -1.008 7.008 17 N -1.114 6.114 18 C 0.158 3.842 19 C -0.056 4.056 20 C -0.174 4.174 21 C -0.076 4.076 22 C -0.196 4.196 23 C 0.199 3.801 24 N -0.646 5.646 25 C 0.088 3.912 26 C 0.093 3.907 27 C -0.191 4.191 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.034 0.966 31 H 0.264 0.736 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.419 0.581 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.058 0.942 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 2.456 21.359 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.041 0.959 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.206 1.206 12 N -0.837 5.837 13 C -0.056 4.056 14 S 2.807 3.193 15 O -1.003 7.003 16 O -0.991 6.991 17 N -0.876 5.876 18 C 0.033 3.967 19 C -0.059 4.059 20 C -0.194 4.194 21 C -0.094 4.094 22 C -0.218 4.218 23 C 0.097 3.903 24 N -0.357 5.357 25 C -0.055 4.055 26 C -0.049 4.049 27 C -0.214 4.214 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.253 0.747 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.143 0.857 39 H 0.162 0.838 40 H 0.155 0.845 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.076 0.924 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.143 2.493 21.175 23.199 hybrid contribution -0.025 0.179 -1.185 1.199 sum -9.168 2.672 19.990 22.154 Atomic orbital electron populations 1.21885 0.96720 1.00196 1.00357 1.18382 0.92298 0.91267 0.81091 0.95911 1.21649 1.31668 1.13110 0.91500 0.92402 1.25629 0.95229 0.95724 1.01617 1.69972 1.37242 1.23673 1.24358 0.85669 0.78409 0.79084 0.78808 1.19041 1.20747 1.20585 1.57520 1.69919 1.21116 1.35160 1.21524 1.00673 0.80648 1.02756 1.01163 0.73572 0.72298 0.72308 1.93550 1.75910 1.57483 1.73314 1.93499 1.69893 1.61192 1.74508 1.55840 1.62091 1.17908 1.51762 1.20286 0.94989 0.92069 0.89329 1.19519 0.94184 0.97509 0.94647 1.21059 1.01000 1.03417 0.93968 1.21146 0.94972 0.94603 0.98704 1.20905 0.97022 1.06198 0.97706 1.17988 0.86304 0.91991 0.94040 1.46557 1.18526 1.53691 1.16973 1.21772 0.95603 1.02377 0.85771 1.21731 0.99812 0.94488 0.88898 1.20713 0.98183 1.03211 0.99340 0.91649 0.93900 0.94657 0.92668 0.91235 0.90961 0.90888 0.74677 0.89361 0.90081 0.85735 0.83839 0.84511 0.92955 0.89872 0.92057 0.92627 0.89241 0.92361 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.97 71.98 0.65 -5.21 16 2 C 0.27 13.46 2.62 44.25 0.12 13.58 16 3 H 0.02 1.29 6.91 -2.39 -0.02 1.27 16 4 C -0.54 -29.25 7.99 25.60 0.20 -29.05 16 5 H 0.06 3.10 7.33 -2.91 -0.02 3.08 16 6 C 0.02 0.97 5.30 84.65 0.45 1.42 16 7 N -0.91 -51.34 11.32 21.45 0.24 -51.09 16 8 Si 0.95 43.34 29.54 68.60 2.03 45.37 16 9 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 N -1.00 -40.63 3.12 -520.45 -1.62 -42.26 16 13 C 0.09 3.02 9.65 127.77 1.23 4.25 16 14 S 2.80 110.14 6.14 -56.49 -0.35 109.80 16 15 O -1.02 -49.26 16.70 -128.00 -2.14 -51.40 16 16 O -1.01 -41.13 16.21 -128.00 -2.08 -43.21 16 17 N -1.11 -33.40 6.05 -190.79 -1.15 -34.56 16 18 C 0.16 3.95 6.37 85.63 0.55 4.50 16 19 C -0.06 -1.31 5.27 -19.88 -0.10 -1.42 16 20 C -0.17 -3.75 9.70 22.29 0.22 -3.54 16 21 C -0.08 -1.39 10.04 22.25 0.22 -1.17 16 22 C -0.20 -3.59 9.31 22.40 0.21 -3.38 16 23 C 0.20 4.12 6.55 38.21 0.25 4.37 16 24 N -0.65 -10.94 3.41 -747.27 -2.55 -13.48 16 25 C 0.09 1.29 10.16 127.77 1.30 2.58 16 26 C 0.09 1.02 9.40 127.77 1.20 2.22 16 27 C -0.19 -4.34 8.86 22.40 0.20 -4.14 16 28 H 0.06 3.27 6.07 -2.38 -0.01 3.26 16 29 H 0.04 1.77 7.67 -2.39 -0.02 1.75 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 2.60 7.02 -2.39 -0.02 2.58 16 34 H 0.07 2.30 7.02 -2.39 -0.02 2.29 16 35 H 0.42 11.80 8.64 -96.75 -0.84 10.97 16 36 H 0.09 2.13 7.69 -2.39 -0.02 2.11 16 37 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 38 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 39 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.14 1.92 6.73 -2.91 -0.02 1.90 16 41 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.91 7.92 -2.38 -0.02 0.89 16 43 H 0.06 1.04 6.20 -2.39 -0.01 1.02 16 44 H 0.06 0.58 7.93 -2.39 -0.02 0.56 16 45 H 0.09 0.65 7.80 -2.39 -0.02 0.63 16 46 H 0.06 0.57 7.97 -2.39 -0.02 0.55 16 47 H 0.13 2.77 6.15 -2.91 -0.02 2.75 16 Total: -1.00 -70.63 389.99 -0.79 -71.42 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: 0.14 Total: 24.39 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 6.69 Total: -14.99 kcal Atomic # 7 Polarization: -136.31 SS G_CDS: -5.08 Total: -141.39 kcal Atomic # 8 Polarization: -90.39 SS G_CDS: -4.21 Total: -94.60 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 110.14 SS G_CDS: -0.35 Total: 109.80 kcal Total: -70.63 -0.79 -71.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283062717.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.220 kcal (2) G-P(sol) polarization free energy of solvation -70.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds