Wall clock time and date at job start Wed Apr 1 2020 01:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45208 * 109.46845 * 2 1 4 4 C 1.34222 * 116.99948 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99768 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99985 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47017 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47436 * 59.99635 * 7 6 4 9 9 C 1.53007 * 109.47032 * 299.99508 * 7 6 4 10 10 C 1.52997 * 109.47233 * 179.97438 * 7 6 4 11 11 C 1.53001 * 109.47574 * 179.97438 * 10 7 6 12 12 S 1.81001 * 109.47218 * 179.97438 * 11 10 7 13 13 C 1.76202 * 99.99784 * 179.97438 * 12 11 10 14 14 N 1.32388 * 126.26021 * 359.97438 * 13 12 11 15 15 N 1.28516 * 110.20609 * 180.02562 * 14 13 12 16 16 C 1.33098 * 109.74302 * 0.02562 * 15 14 13 17 17 C 1.39776 * 126.56257 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99778 * 186.09356 * 17 16 15 19 19 C 1.40085 * 120.00068 * 6.08606 * 17 16 15 20 20 N 1.30808 * 119.99942 * 184.12744 * 19 17 16 21 21 Si 1.86799 * 119.99669 * 4.13543 * 19 17 16 22 22 H 1.48509 * 109.46950 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47355 * 299.99259 * 21 19 17 24 24 H 1.48501 * 109.47215 * 59.99928 * 21 19 17 25 25 N 1.36669 * 126.25987 * 180.30691 * 13 12 11 26 26 C 1.46505 * 127.15024 * 359.97438 * 25 13 12 27 27 H 1.09000 * 109.47419 * 59.99738 * 1 2 3 28 28 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47176 * 299.99330 * 1 2 3 30 30 H 1.09001 * 109.47055 * 240.00984 * 2 1 3 31 31 H 1.09000 * 109.47419 * 120.00262 * 2 1 3 32 32 H 1.08990 * 109.47385 * 60.00138 * 6 4 3 33 33 H 1.09002 * 109.46973 * 299.99739 * 6 4 3 34 34 H 1.09009 * 109.46981 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.47167 * 300.00017 * 8 7 6 36 36 H 1.08993 * 109.47060 * 60.00211 * 8 7 6 37 37 H 1.09002 * 109.47173 * 300.00664 * 9 7 6 38 38 H 1.08999 * 109.47027 * 60.00316 * 9 7 6 39 39 H 1.08999 * 109.47266 * 180.02562 * 9 7 6 40 40 H 1.09007 * 109.47327 * 59.99320 * 10 7 6 41 41 H 1.09006 * 109.46700 * 299.99804 * 10 7 6 42 42 H 1.09003 * 109.46515 * 59.99622 * 11 10 7 43 43 H 1.08993 * 109.47002 * 300.00051 * 11 10 7 44 44 H 0.97000 * 120.00392 * 354.84969 * 20 19 17 45 45 H 1.08991 * 109.47295 * 270.14314 * 26 25 13 46 46 H 1.08996 * 109.46934 * 30.14387 * 26 25 13 47 47 H 1.09000 * 109.46691 * 150.13746 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4485 2.8575 0.0010 8 6 5.9201 2.1111 -1.2485 9 6 5.9201 2.1101 1.2500 10 6 6.0333 4.2713 0.0010 11 6 7.5612 4.1914 0.0016 12 16 8.2529 5.8640 0.0008 13 6 9.9733 5.4836 0.0023 14 7 10.5074 4.2722 0.0041 15 7 11.7900 4.3525 0.0054 16 6 12.1604 5.6309 0.0050 17 6 13.4705 6.1182 0.0066 18 1 13.6522 7.1783 0.1054 19 6 14.5478 5.2317 -0.1199 20 7 15.7748 5.6775 -0.0375 21 14 14.2319 3.4131 -0.4064 22 1 15.5281 2.6950 -0.5049 23 1 13.4456 2.8627 0.7267 24 1 13.4711 3.2357 -1.6693 25 7 11.0005 6.3850 0.0083 26 6 10.8953 7.8463 0.0141 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.5844 3.4694 0.8911 33 1 3.5850 3.4699 -0.8888 34 1 7.0086 2.0537 -1.2483 35 1 5.5035 1.1039 -1.2489 36 1 5.5841 2.6436 -2.1382 37 1 5.5841 2.6418 2.1403 38 1 5.5036 1.1028 1.2496 39 1 7.0086 2.0534 1.2502 40 1 5.6973 4.8036 0.8910 41 1 5.6972 4.8034 -0.8890 42 1 7.8974 3.6591 -0.8883 43 1 7.8968 3.6594 0.8917 44 1 15.9408 6.6303 0.0362 45 1 10.8688 8.2127 -1.0120 46 1 9.9817 8.1427 0.5294 47 1 11.7570 8.2705 0.5294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286574736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:30 Heat of formation + Delta-G solvation = -49.964808 kcal Electronic energy + Delta-G solvation = -27034.014741 eV Core-core repulsion = 23150.379711 eV Total energy + Delta-G solvation = -3883.635030 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.03094 -40.91848 -38.32809 -36.47059 -33.93207 -33.57868 -32.28476 -31.12519 -29.98982 -28.42623 -27.32976 -26.76294 -25.50891 -24.47615 -23.33956 -21.50222 -21.29892 -20.16174 -18.82480 -18.19183 -17.96118 -17.01836 -16.69567 -16.42829 -15.54456 -15.29567 -15.01813 -14.84739 -14.79260 -14.13478 -13.80659 -13.77018 -13.55314 -13.29640 -13.22869 -12.86507 -12.65491 -12.63938 -12.56277 -12.16543 -12.00823 -11.98707 -11.86326 -11.50501 -11.39021 -11.32721 -11.10766 -10.92439 -10.82992 -10.76945 -10.67872 -10.24449 -10.07545 -9.85658 -9.55169 -9.38699 -9.07144 -8.66784 -8.38763 -7.42601 -7.08077 -4.83995 1.85689 1.94834 2.37354 2.66698 2.91868 3.57676 3.61060 3.87881 4.04978 4.15762 4.27815 4.41305 4.42561 4.50448 4.57185 4.57509 4.85278 4.89058 5.03391 5.10947 5.13404 5.22071 5.32242 5.32372 5.33864 5.38084 5.39774 5.53235 5.62259 5.72534 5.82795 5.86921 5.88570 5.90352 5.96242 5.99393 6.07967 6.28276 6.38291 6.39136 6.51088 6.65304 7.12492 7.39884 7.52860 7.54010 8.04752 8.35280 8.55711 9.96449 10.12195 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.002121 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.932942 B =13196.381394 C =14166.096259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.363 6.363 4 C 0.462 3.538 5 O -0.495 6.495 6 C -0.105 4.105 7 C -0.042 4.042 8 C -0.161 4.161 9 C -0.161 4.161 10 C -0.094 4.094 11 C -0.093 4.093 12 S -0.056 6.056 13 C 0.069 3.931 14 N -0.269 5.269 15 N -0.416 5.416 16 C 0.345 3.655 17 C -0.492 4.492 18 H 0.083 0.917 19 C 0.065 3.935 20 N -0.808 5.808 21 Si 1.112 2.888 22 H -0.311 1.311 23 H -0.260 1.260 24 H -0.281 1.281 25 N -0.513 5.513 26 C 0.102 3.898 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.283 0.717 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.253 -3.199 -0.022 27.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.280 6.280 4 C 0.305 3.695 5 O -0.382 6.382 6 C -0.142 4.142 7 C -0.044 4.044 8 C -0.218 4.218 9 C -0.218 4.218 10 C -0.133 4.133 11 C -0.242 4.242 12 S 0.171 5.829 13 C -0.305 4.305 14 N -0.112 5.112 15 N -0.266 5.266 16 C 0.101 3.899 17 C -0.533 4.533 18 H 0.101 0.899 19 C -0.158 4.158 20 N -0.432 5.432 21 Si 0.941 3.059 22 H -0.241 1.241 23 H -0.186 1.186 24 H -0.207 1.207 25 N -0.214 5.214 26 C -0.042 4.042 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.722 -5.334 -0.147 27.250 hybrid contribution 0.009 2.107 0.185 2.115 sum -26.713 -3.227 0.038 26.907 Atomic orbital electron populations 1.21809 0.92683 1.02988 1.03511 1.23015 0.95321 0.80284 1.02653 1.86514 1.24952 1.32395 1.84156 1.23800 0.80259 0.93100 0.72334 1.90593 1.59598 1.43467 1.44549 1.21543 0.96086 0.90768 1.05834 1.20316 0.90974 0.95320 0.97816 1.22214 1.02571 1.01590 0.95424 1.22214 1.02563 1.01589 0.95423 1.21401 0.92855 0.95893 1.03146 1.23477 0.97047 0.96253 1.07418 1.84454 0.91192 1.11754 1.95454 1.25421 0.94189 0.89770 1.21098 1.74265 1.03282 1.17673 1.16003 1.73992 1.02893 1.13998 1.35714 1.21720 0.87772 0.86463 0.93916 1.19391 0.87613 0.97091 1.49244 0.89921 1.27344 0.90648 1.09055 0.88737 1.70675 1.21398 1.18590 1.32490 0.82702 0.72124 0.70643 0.80448 1.24137 1.18595 1.20723 1.45847 1.05150 1.06205 1.64228 1.21530 1.02716 0.78003 1.01979 0.91483 0.90255 0.91480 0.91215 0.91214 0.87577 0.87576 0.91549 0.90347 0.93087 0.93104 0.90338 0.91556 0.90837 0.90816 0.88670 0.88687 0.90576 0.92187 0.91159 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.29 37.16 0.38 -0.32 16 2 C 0.06 0.43 6.19 37.16 0.23 0.66 16 3 O -0.36 -3.18 10.22 -39.24 -0.40 -3.58 16 4 C 0.46 4.41 7.37 36.01 0.27 4.68 16 5 O -0.49 -5.93 11.10 -18.76 -0.21 -6.13 16 6 C -0.10 -0.80 4.88 -27.88 -0.14 -0.93 16 7 C -0.04 -0.41 0.54 -154.51 -0.08 -0.49 16 8 C -0.16 -1.77 7.82 37.16 0.29 -1.48 16 9 C -0.16 -1.77 7.82 37.16 0.29 -1.48 16 10 C -0.09 -0.95 4.27 -26.73 -0.11 -1.06 16 11 C -0.09 -1.33 4.52 37.16 0.17 -1.16 16 12 S -0.06 -0.93 21.79 -107.50 -2.34 -3.28 16 13 C 0.07 1.58 8.09 -87.28 -0.71 0.87 16 14 N -0.27 -6.96 11.62 30.89 0.36 -6.60 16 15 N -0.42 -11.71 7.52 31.26 0.23 -11.48 16 16 C 0.34 9.31 7.27 -154.81 -1.13 8.19 16 17 C -0.49 -13.37 9.50 -38.31 -0.36 -13.74 16 18 H 0.08 2.17 7.46 -52.49 -0.39 1.78 16 19 C 0.06 1.77 5.52 -17.29 -0.10 1.68 16 20 N -0.81 -21.87 13.65 55.56 0.76 -21.11 16 21 Si 1.11 28.46 25.90 -169.99 -4.40 24.06 16 22 H -0.31 -7.64 7.11 56.52 0.40 -7.24 16 23 H -0.26 -6.88 6.76 56.52 0.38 -6.50 16 24 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 25 N -0.51 -12.02 3.26 -123.18 -0.40 -12.42 16 26 C 0.10 1.83 10.89 59.85 0.65 2.48 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.83 6.43 -51.92 -0.33 0.50 16 35 H 0.08 0.94 5.52 -51.93 -0.29 0.65 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.94 5.52 -51.93 -0.29 0.65 16 39 H 0.07 0.83 6.43 -51.93 -0.33 0.49 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.48 6.43 -51.91 -0.33 1.15 16 43 H 0.09 1.48 6.43 -51.92 -0.33 1.14 16 44 H 0.28 7.27 8.72 -40.82 -0.36 6.92 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 47 H 0.08 1.36 7.48 -51.93 -0.39 0.97 16 LS Contribution 386.95 15.07 5.83 5.83 Total: -1.00 -32.98 386.95 -8.26 -41.24 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -7.34 Total: -4.41 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -0.35 Total: -2.13 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.95 Total: -51.60 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.61 Total: -9.72 kcal Atomic # 14 Polarization: 28.46 SS G_CDS: -4.40 Total: 24.06 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -2.34 Total: -3.28 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.98 -8.26 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286574736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.727 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds