Wall clock time and date at job start Wed Apr 1 2020 01:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45208 * 109.46845 * 2 1 4 4 C 1.34222 * 116.99948 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99768 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99985 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47017 * 180.02562 * 6 4 3 8 8 C 1.52998 * 109.47436 * 59.99635 * 7 6 4 9 9 C 1.53007 * 109.47032 * 299.99508 * 7 6 4 10 10 C 1.52997 * 109.47233 * 179.97438 * 7 6 4 11 11 C 1.53001 * 109.47574 * 179.97438 * 10 7 6 12 12 S 1.81001 * 109.47218 * 179.97438 * 11 10 7 13 13 C 1.76202 * 99.99784 * 179.97438 * 12 11 10 14 14 N 1.32388 * 126.26021 * 359.97438 * 13 12 11 15 15 N 1.28516 * 110.20609 * 180.02562 * 14 13 12 16 16 C 1.33098 * 109.74302 * 0.02562 * 15 14 13 17 17 C 1.39776 * 126.56257 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99778 * 186.09356 * 17 16 15 19 19 C 1.40085 * 120.00068 * 6.08606 * 17 16 15 20 20 N 1.30808 * 119.99942 * 184.12744 * 19 17 16 21 21 Si 1.86799 * 119.99669 * 4.13543 * 19 17 16 22 22 H 1.48509 * 109.46950 * 179.97438 * 21 19 17 23 23 H 1.48495 * 109.47355 * 299.99259 * 21 19 17 24 24 H 1.48501 * 109.47215 * 59.99928 * 21 19 17 25 25 N 1.36669 * 126.25987 * 180.30691 * 13 12 11 26 26 C 1.46505 * 127.15024 * 359.97438 * 25 13 12 27 27 H 1.09000 * 109.47419 * 59.99738 * 1 2 3 28 28 H 1.09000 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47176 * 299.99330 * 1 2 3 30 30 H 1.09001 * 109.47055 * 240.00984 * 2 1 3 31 31 H 1.09000 * 109.47419 * 120.00262 * 2 1 3 32 32 H 1.08990 * 109.47385 * 60.00138 * 6 4 3 33 33 H 1.09002 * 109.46973 * 299.99739 * 6 4 3 34 34 H 1.09009 * 109.46981 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.47167 * 300.00017 * 8 7 6 36 36 H 1.08993 * 109.47060 * 60.00211 * 8 7 6 37 37 H 1.09002 * 109.47173 * 300.00664 * 9 7 6 38 38 H 1.08999 * 109.47027 * 60.00316 * 9 7 6 39 39 H 1.08999 * 109.47266 * 180.02562 * 9 7 6 40 40 H 1.09007 * 109.47327 * 59.99320 * 10 7 6 41 41 H 1.09006 * 109.46700 * 299.99804 * 10 7 6 42 42 H 1.09003 * 109.46515 * 59.99622 * 11 10 7 43 43 H 1.08993 * 109.47002 * 300.00051 * 11 10 7 44 44 H 0.97000 * 120.00392 * 354.84969 * 20 19 17 45 45 H 1.08991 * 109.47295 * 270.14314 * 26 25 13 46 46 H 1.08996 * 109.46934 * 30.14387 * 26 25 13 47 47 H 1.09000 * 109.46691 * 150.13746 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 6 5.4485 2.8575 0.0010 8 6 5.9201 2.1111 -1.2485 9 6 5.9201 2.1101 1.2500 10 6 6.0333 4.2713 0.0010 11 6 7.5612 4.1914 0.0016 12 16 8.2529 5.8640 0.0008 13 6 9.9733 5.4836 0.0023 14 7 10.5074 4.2722 0.0041 15 7 11.7900 4.3525 0.0054 16 6 12.1604 5.6309 0.0050 17 6 13.4705 6.1182 0.0066 18 1 13.6522 7.1783 0.1054 19 6 14.5478 5.2317 -0.1199 20 7 15.7748 5.6775 -0.0375 21 14 14.2319 3.4131 -0.4064 22 1 15.5281 2.6950 -0.5049 23 1 13.4456 2.8627 0.7267 24 1 13.4711 3.2357 -1.6693 25 7 11.0005 6.3850 0.0083 26 6 10.8953 7.8463 0.0141 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.5844 3.4694 0.8911 33 1 3.5850 3.4699 -0.8888 34 1 7.0086 2.0537 -1.2483 35 1 5.5035 1.1039 -1.2489 36 1 5.5841 2.6436 -2.1382 37 1 5.5841 2.6418 2.1403 38 1 5.5036 1.1028 1.2496 39 1 7.0086 2.0534 1.2502 40 1 5.6973 4.8036 0.8910 41 1 5.6972 4.8034 -0.8890 42 1 7.8974 3.6591 -0.8883 43 1 7.8968 3.6594 0.8917 44 1 15.9408 6.6303 0.0362 45 1 10.8688 8.2127 -1.0120 46 1 9.9817 8.1427 0.5294 47 1 11.7570 8.2705 0.5294 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286574736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:13:29 Heat of formation + Delta-G solvation = -67.661888 kcal Electronic energy + Delta-G solvation = -27034.782144 eV Core-core repulsion = 23150.379711 eV Total energy + Delta-G solvation = -3884.402433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.83730 -41.75385 -39.08726 -37.24522 -35.94333 -35.40062 -32.83456 -32.12902 -31.82584 -29.17743 -28.43910 -28.21907 -27.31141 -25.45250 -23.96970 -23.31403 -22.26645 -21.86875 -20.19823 -19.66583 -18.67826 -18.24950 -17.67665 -17.13105 -17.09664 -16.89352 -16.27551 -16.05139 -15.75352 -15.52690 -15.27258 -14.87144 -14.78058 -14.64295 -14.31551 -14.19374 -13.82152 -13.57769 -13.48931 -13.20716 -13.11226 -13.09007 -12.88257 -12.74240 -12.47234 -12.29071 -12.27663 -12.17841 -11.96347 -11.80313 -11.58071 -11.53407 -11.44747 -11.41602 -11.33830 -10.89365 -10.88120 -10.55525 -10.36715 -9.49941 -8.65065 -6.86353 0.35355 0.98527 1.23783 1.25147 1.52260 1.59091 1.76496 1.91885 2.12065 2.21622 2.40687 3.03475 3.52871 3.71545 3.80097 3.93726 4.02328 4.07616 4.10921 4.11671 4.30342 4.34050 4.37975 4.44793 4.48413 4.56292 4.63167 4.65737 4.67704 4.73496 4.86139 4.86671 4.94024 4.98027 5.02220 5.10168 5.10447 5.19369 5.23112 5.25886 5.36393 5.44243 5.47851 5.70140 5.71240 5.99982 6.38673 6.56963 6.83638 7.91814 8.16203 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.002121 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.932942 B =13196.381394 C =14166.096259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.364 6.364 4 C 0.460 3.540 5 O -0.527 6.527 6 C -0.099 4.099 7 C -0.036 4.036 8 C -0.160 4.160 9 C -0.159 4.159 10 C -0.084 4.084 11 C -0.095 4.095 12 S 0.003 5.997 13 C 0.081 3.919 14 N -0.313 5.313 15 N -0.450 5.450 16 C 0.324 3.676 17 C -0.509 4.509 18 H 0.084 0.916 19 C 0.043 3.957 20 N -0.822 5.822 21 Si 1.145 2.855 22 H -0.296 1.296 23 H -0.279 1.279 24 H -0.296 1.296 25 N -0.516 5.516 26 C 0.093 3.907 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.042 0.958 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.287 0.713 45 H 0.078 0.922 46 H 0.101 0.899 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.685 -1.468 -0.053 30.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.281 6.281 4 C 0.305 3.695 5 O -0.416 6.416 6 C -0.137 4.137 7 C -0.038 4.038 8 C -0.217 4.217 9 C -0.216 4.216 10 C -0.123 4.123 11 C -0.244 4.244 12 S 0.230 5.770 13 C -0.294 4.294 14 N -0.155 5.155 15 N -0.298 5.298 16 C 0.076 3.924 17 C -0.551 4.551 18 H 0.102 0.898 19 C -0.177 4.177 20 N -0.448 5.448 21 Si 0.974 3.026 22 H -0.226 1.226 23 H -0.206 1.206 24 H -0.224 1.224 25 N -0.216 5.216 26 C -0.049 4.049 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.119 0.881 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -30.150 -3.580 -0.178 30.362 hybrid contribution 0.785 1.576 0.198 1.772 sum -29.365 -2.004 0.020 29.433 Atomic orbital electron populations 1.21815 0.90659 1.04167 1.03739 1.23207 0.96921 0.79597 1.02258 1.86514 1.24501 1.33267 1.83827 1.24227 0.80323 0.93587 0.71392 1.90598 1.60274 1.44668 1.46101 1.21571 0.93786 0.89957 1.08341 1.20218 0.92801 0.94569 0.96200 1.22180 1.00951 1.01527 0.97001 1.22180 1.00944 1.01525 0.96999 1.21408 0.89245 0.96423 1.05235 1.23638 0.99998 0.94685 1.06074 1.84251 0.85610 1.12731 1.94428 1.26694 0.97399 0.89035 1.16271 1.74202 1.02618 1.19467 1.19203 1.73856 1.04328 1.15179 1.36469 1.21809 0.88835 0.86904 0.94812 1.19396 0.87935 0.97142 1.50578 0.89755 1.27691 0.90931 1.10134 0.88923 1.70662 1.21324 1.18943 1.33844 0.82209 0.71870 0.69765 0.78752 1.22557 1.20635 1.22377 1.46226 1.04287 1.08313 1.62742 1.21910 1.04460 0.74800 1.03756 0.91214 0.88645 0.91209 0.91673 0.91670 0.84977 0.84982 0.93891 0.91617 0.91571 0.91582 0.91609 0.93897 0.88687 0.88681 0.90184 0.90183 0.90222 0.90316 0.88093 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 71.98 0.74 -0.34 16 2 C 0.05 0.70 6.19 71.98 0.45 1.14 16 3 O -0.36 -5.71 10.22 -51.34 -0.52 -6.23 16 4 C 0.46 7.98 7.37 71.24 0.53 8.51 16 5 O -0.53 -12.47 11.10 21.95 0.24 -12.23 16 6 C -0.10 -1.16 4.88 29.85 0.15 -1.01 16 7 C -0.04 -0.61 0.54 -52.18 -0.03 -0.64 16 8 C -0.16 -3.39 7.82 71.98 0.56 -2.83 16 9 C -0.16 -3.38 7.82 71.98 0.56 -2.82 16 10 C -0.08 -1.39 4.27 30.59 0.13 -1.26 16 11 C -0.09 -2.54 4.52 71.98 0.33 -2.21 16 12 S 0.00 0.08 21.79 -56.49 -1.23 -1.15 16 13 C 0.08 3.60 8.09 179.18 1.45 5.05 16 14 N -0.31 -16.36 11.62 -56.17 -0.65 -17.01 16 15 N -0.45 -25.84 7.52 -55.02 -0.41 -26.25 16 16 C 0.32 17.63 7.27 133.23 0.97 18.60 16 17 C -0.51 -28.01 9.50 23.09 0.22 -27.79 16 18 H 0.08 4.47 7.46 -2.91 -0.02 4.44 16 19 C 0.04 2.41 5.52 85.29 0.47 2.88 16 20 N -0.82 -44.89 13.65 21.86 0.30 -44.59 16 21 Si 1.14 59.63 25.90 68.60 1.78 61.41 16 22 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 23 H -0.28 -15.28 6.76 99.48 0.67 -14.61 16 24 H -0.30 -15.97 7.11 99.48 0.71 -15.26 16 25 N -0.52 -23.56 3.26 -543.63 -1.77 -25.33 16 26 C 0.09 3.08 10.89 127.77 1.39 4.47 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 31 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 32 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.13 0.93 8.14 -2.39 -0.02 0.92 16 34 H 0.04 1.09 6.43 -2.38 -0.02 1.08 16 35 H 0.07 1.58 5.52 -2.39 -0.01 1.57 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.59 5.52 -2.39 -0.01 1.57 16 39 H 0.04 1.09 6.43 -2.39 -0.02 1.08 16 40 H 0.09 1.25 8.14 -2.38 -0.02 1.24 16 41 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.08 2.44 6.43 -2.39 -0.02 2.42 16 43 H 0.08 2.43 6.43 -2.40 -0.02 2.42 16 44 H 0.29 14.85 8.72 -92.71 -0.81 14.04 16 45 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 46 H 0.10 2.71 7.85 -2.39 -0.02 2.70 16 47 H 0.08 2.69 7.48 -2.39 -0.02 2.67 16 Total: -1.00 -73.77 386.95 6.53 -67.24 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 0.90 Total: 2.39 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 7.91 Total: 1.75 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -2.54 Total: -113.18 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.28 Total: -18.46 kcal Atomic # 14 Polarization: 59.63 SS G_CDS: 1.78 Total: 61.41 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -1.23 Total: -1.15 kcal Total: -73.77 6.53 -67.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286574736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.423 kcal (2) G-P(sol) polarization free energy of solvation -73.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds