Wall clock time and date at job start Wed Apr 1 2020 00:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46886 * 2 1 4 4 C 1.50704 * 109.47025 * 240.00694 * 2 1 3 5 5 H 1.07994 * 119.99704 * 240.00106 * 4 2 1 6 6 C 1.37879 * 119.99874 * 59.99472 * 4 2 1 7 7 N 1.31508 * 120.00333 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99521 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46985 * 120.00149 * 8 6 4 11 11 H 1.48503 * 109.46970 * 239.99883 * 8 6 4 12 12 N 1.46895 * 109.47347 * 120.00213 * 2 1 3 13 13 C 1.46901 * 110.99900 * 58.95904 * 12 2 1 14 14 C 1.38576 * 110.99992 * 294.99760 * 12 2 1 15 15 N 1.31214 * 126.47760 * 0.04749 * 14 12 2 16 16 N 1.28525 * 109.86191 * 179.69194 * 15 14 12 17 17 C 1.30295 * 110.05580 * 0.44621 * 16 15 14 18 18 C 1.50695 * 126.35100 * 179.81934 * 17 16 15 19 19 O 1.42904 * 109.47463 * 269.69673 * 18 17 16 20 20 C 1.35754 * 117.00066 * 179.97438 * 19 18 17 21 21 C 1.38962 * 119.90703 * 179.97438 * 20 19 18 22 22 C 1.37732 * 120.09974 * 179.97438 * 21 20 19 23 23 C 1.39753 * 119.90024 * 0.02562 * 22 21 20 24 24 C 1.43205 * 120.09315 * 179.97438 * 23 22 21 25 25 N 9.71237 * 161.83170 * 286.36098 * 16 1 2 26 26 C 1.39757 * 119.81620 * 0.24956 * 23 22 21 27 27 C 1.37732 * 119.90111 * 359.51698 * 26 23 22 28 28 N 1.36464 * 126.46847 * 179.97438 * 14 12 2 29 29 C 1.46498 * 127.13623 * 0.06549 * 28 14 12 30 30 H 1.08997 * 109.47617 * 59.99718 * 1 2 3 31 31 H 1.09007 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46760 * 299.99241 * 1 2 3 33 33 H 0.96999 * 120.00381 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46538 * 296.03944 * 13 12 2 35 35 H 1.08994 * 109.47437 * 56.04194 * 13 12 2 36 36 H 1.08995 * 109.47004 * 176.04564 * 13 12 2 37 37 H 1.09005 * 109.47304 * 149.69294 * 18 17 16 38 38 H 1.09004 * 109.46867 * 29.69695 * 18 17 16 39 39 H 1.08003 * 119.94972 * 359.97438 * 21 20 19 40 40 H 1.07996 * 120.04689 * 179.97438 * 22 21 20 41 41 H 1.07993 * 120.05198 * 179.74294 * 26 23 22 42 42 H 1.08003 * 119.95532 * 180.22976 * 27 26 23 43 43 H 1.09002 * 109.46818 * 269.98983 * 29 28 14 44 44 H 1.08990 * 109.47190 * 29.99192 * 29 28 14 45 45 H 1.09002 * 109.46707 * 149.99765 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9425 0.8298 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 3.1453 -2.2873 -3.6040 10 1 1.1658 -1.5863 -4.8162 11 1 3.1463 -0.1869 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0762 1.2458 14 6 1.6698 -0.0023 2.3490 15 7 0.9931 1.1202 2.4094 16 7 0.8437 1.4745 3.6358 17 6 1.4197 0.6113 4.4236 18 6 1.4717 0.6712 5.9285 19 8 2.6389 1.3876 6.3367 20 6 2.8370 1.5336 7.6717 21 6 3.9531 2.2194 8.1356 22 6 4.1577 2.3704 9.4893 23 6 3.2411 1.8322 10.3967 24 6 3.4500 1.9863 11.8050 25 7 3.6178 2.1051 12.9222 26 6 2.1230 1.1383 9.9260 27 6 1.9236 0.9962 8.5706 28 7 1.9628 -0.3626 3.6322 29 6 2.7059 -1.5465 4.0706 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.7084 1.1615 -3.4843 34 1 0.4421 -2.0731 1.3346 35 1 1.8168 -2.5950 0.3316 36 1 1.9619 -2.5869 2.1056 37 1 1.5071 -0.3410 6.3315 38 1 0.5835 1.1804 6.3027 39 1 4.6611 2.6346 7.4337 40 1 5.0255 2.9031 9.8489 41 1 1.4145 0.7174 10.6239 42 1 1.0579 0.4633 8.2058 43 1 2.0123 -2.3721 4.2306 44 1 3.4310 -1.8242 3.3058 45 1 3.2269 -1.3241 5.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290343302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:39 Heat of formation + Delta-G solvation = 129.292628 kcal Electronic energy + Delta-G solvation = -28372.924253 eV Core-core repulsion = 24393.911209 eV Total energy + Delta-G solvation = -3979.013044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.69444 -40.67860 -38.41554 -37.45136 -36.48396 -34.85635 -32.92784 -31.91763 -31.36293 -30.26965 -28.82655 -27.94736 -27.01394 -25.25887 -25.07316 -23.82887 -23.25930 -21.91287 -20.67670 -19.61319 -19.36372 -18.67595 -17.10127 -16.57378 -16.33707 -16.12860 -15.88667 -15.45328 -15.21356 -14.74760 -14.59072 -14.37817 -14.31811 -14.05566 -13.98957 -13.53951 -13.30347 -13.22163 -13.01836 -12.81166 -12.69431 -12.50365 -12.43776 -11.61404 -11.51657 -11.45143 -11.36921 -11.21756 -10.98702 -10.84328 -10.68084 -10.30096 -10.14335 -9.93016 -9.86798 -9.64511 -9.22896 -8.95884 -8.72615 -8.47208 -7.52412 -6.09514 -4.17276 0.37697 0.78115 1.71866 2.30824 2.43459 2.53161 2.85998 3.24503 3.32583 3.34930 3.38374 3.41744 3.52553 4.11133 4.22215 4.26800 4.37214 4.43483 4.51683 4.58086 4.68103 4.82299 4.95003 5.00175 5.04539 5.22217 5.28936 5.41668 5.49470 5.51881 5.62098 5.72236 5.81580 5.89562 5.95788 6.06624 6.18212 6.35647 6.67265 6.79385 6.85901 6.99728 7.11601 7.13079 7.34289 7.53657 7.66633 7.88580 8.20075 8.34087 8.83895 9.16369 9.47664 10.96895 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033821 B = 0.001892 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.690334 B =14797.432178 C =14859.310657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.226 3.774 3 H 0.057 0.943 4 C -0.516 4.516 5 H 0.065 0.935 6 C 0.064 3.936 7 N -0.883 5.883 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.449 5.449 13 C 0.029 3.971 14 C 0.401 3.599 15 N -0.312 5.312 16 N -0.251 5.251 17 C 0.125 3.875 18 C 0.162 3.838 19 O -0.302 6.302 20 C 0.169 3.831 21 C -0.152 4.152 22 C -0.028 4.028 23 C -0.077 4.077 24 C 0.260 3.740 25 N -0.427 5.427 26 C -0.025 4.025 27 C -0.214 4.214 28 N -0.485 5.485 29 C 0.077 3.923 30 H 0.092 0.908 31 H 0.022 0.978 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.036 0.964 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 -4.600 21.568 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.122 3.878 3 H 0.075 0.925 4 C -0.555 4.555 5 H 0.083 0.917 6 C -0.139 4.139 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.172 5.172 13 C -0.118 4.118 14 C 0.046 3.954 15 N -0.159 5.159 16 N -0.094 5.094 17 C -0.141 4.141 18 C 0.085 3.915 19 O -0.213 6.213 20 C 0.122 3.878 21 C -0.170 4.170 22 C -0.048 4.048 23 C -0.081 4.081 24 C -0.054 4.054 25 N -0.103 5.103 26 C -0.046 4.046 27 C -0.233 4.233 28 N -0.183 5.183 29 C -0.066 4.066 30 H 0.111 0.889 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.094 0.906 44 H 0.116 0.884 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.009 -3.080 22.473 22.882 hybrid contribution 0.155 -1.739 -0.881 1.956 sum 3.165 -4.819 21.592 22.348 Atomic orbital electron populations 1.22418 0.98933 0.99049 1.02740 1.19441 0.91367 0.94891 0.82059 0.92541 1.21042 1.31960 1.13082 0.89410 0.91712 1.24896 0.94959 0.95036 0.98978 1.69919 1.35955 1.22492 1.23659 0.86413 0.78542 0.79549 0.82701 1.19751 1.21022 1.20913 1.59334 1.55251 1.03278 0.99351 1.22481 0.98419 0.87783 1.03159 1.23440 0.94015 0.94166 0.83822 1.74954 1.18221 1.12469 1.10215 1.73955 1.17295 1.21221 0.96948 1.23500 1.05271 0.91224 0.94127 1.20637 0.88012 0.96910 0.85943 1.86203 1.44101 1.71162 1.19804 1.19313 0.93517 0.92501 0.82490 1.20417 0.98097 1.03148 0.95382 1.20975 0.97261 0.95175 0.91394 1.15911 0.99571 1.07870 0.84754 1.25659 0.93682 0.93502 0.92606 1.81271 1.07977 1.09067 1.11968 1.20942 0.94649 0.93807 0.95152 1.21237 1.01848 1.06943 0.93263 1.45992 1.44551 1.21542 1.06237 1.22074 0.96809 0.85409 1.02335 0.88913 0.95886 0.94394 0.92716 0.94498 0.88374 0.93166 0.90041 0.88079 0.83837 0.84240 0.84627 0.84135 0.90571 0.88443 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.26 37.16 0.31 -3.89 16 2 C 0.23 5.60 2.03 -68.87 -0.14 5.46 16 3 H 0.06 1.61 7.95 -51.93 -0.41 1.20 16 4 C -0.52 -13.36 7.88 -34.44 -0.27 -13.63 16 5 H 0.06 1.62 6.77 -52.49 -0.36 1.27 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.88 -24.58 11.32 55.43 0.63 -23.95 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.45 -9.25 4.80 -176.09 -0.85 -10.09 16 13 C 0.03 0.49 8.60 60.06 0.52 1.00 16 14 C 0.40 7.88 6.75 -318.87 -2.15 5.72 16 15 N -0.31 -6.88 9.32 30.32 0.28 -6.60 16 16 N -0.25 -4.86 12.18 32.99 0.40 -4.46 16 17 C 0.12 1.85 7.70 -154.01 -1.19 0.67 16 18 C 0.16 1.51 4.94 36.00 0.18 1.69 16 19 O -0.30 -3.07 10.11 -18.97 -0.19 -3.26 16 20 C 0.17 1.30 6.69 -39.04 -0.26 1.04 16 21 C -0.15 -1.03 9.97 -39.50 -0.39 -1.42 16 22 C -0.03 -0.16 9.75 -39.20 -0.38 -0.54 16 23 C -0.08 -0.49 5.74 -106.84 -0.61 -1.11 16 24 C 0.26 2.18 15.33 -22.47 -0.34 1.83 16 25 N -0.43 -4.66 18.54 41.83 0.78 -3.89 16 26 C -0.02 -0.13 9.75 -39.20 -0.38 -0.52 16 27 C -0.21 -1.22 9.01 -39.49 -0.36 -1.58 16 28 N -0.49 -7.27 3.21 -121.46 -0.39 -7.66 16 29 C 0.08 0.74 9.20 59.85 0.55 1.29 16 30 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 31 H 0.02 0.52 6.47 -51.93 -0.34 0.18 16 32 H 0.04 0.91 5.88 -51.92 -0.31 0.60 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.04 0.64 6.51 -51.93 -0.34 0.30 16 35 H 0.10 1.73 6.41 -51.93 -0.33 1.40 16 36 H 0.05 0.65 5.41 -51.93 -0.28 0.37 16 37 H 0.08 0.48 7.43 -51.93 -0.39 0.10 16 38 H 0.10 0.79 7.65 -51.93 -0.40 0.39 16 39 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 42 H 0.14 0.54 6.28 -52.48 -0.33 0.21 16 43 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 44 H 0.10 0.98 7.57 -51.93 -0.39 0.59 16 45 H 0.08 0.61 7.88 -51.93 -0.41 0.20 16 LS Contribution 375.84 15.07 5.66 5.66 Total: -1.00 -33.39 375.84 -9.13 -42.52 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.40 Total: -1.26 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -5.03 Total: -2.38 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.85 Total: -56.64 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: -0.19 Total: -3.26 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.39 -9.13 -42.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290343302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.812 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds