Wall clock time and date at job start Wed Apr 1 2020 00:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46886 * 2 1 4 4 C 1.50704 * 109.47025 * 240.00694 * 2 1 3 5 5 H 1.07994 * 119.99704 * 240.00106 * 4 2 1 6 6 C 1.37879 * 119.99874 * 59.99472 * 4 2 1 7 7 N 1.31508 * 120.00333 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99521 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46985 * 120.00149 * 8 6 4 11 11 H 1.48503 * 109.46970 * 239.99883 * 8 6 4 12 12 N 1.46895 * 109.47347 * 120.00213 * 2 1 3 13 13 C 1.46901 * 110.99900 * 58.95904 * 12 2 1 14 14 C 1.38576 * 110.99992 * 294.99760 * 12 2 1 15 15 N 1.31214 * 126.47760 * 0.04749 * 14 12 2 16 16 N 1.28525 * 109.86191 * 179.69194 * 15 14 12 17 17 C 1.30295 * 110.05580 * 0.44621 * 16 15 14 18 18 C 1.50695 * 126.35100 * 179.81934 * 17 16 15 19 19 O 1.42904 * 109.47463 * 269.69673 * 18 17 16 20 20 C 1.35754 * 117.00066 * 179.97438 * 19 18 17 21 21 C 1.38962 * 119.90703 * 179.97438 * 20 19 18 22 22 C 1.37732 * 120.09974 * 179.97438 * 21 20 19 23 23 C 1.39753 * 119.90024 * 0.02562 * 22 21 20 24 24 C 1.43205 * 120.09315 * 179.97438 * 23 22 21 25 25 N 9.71237 * 161.83170 * 286.36098 * 16 1 2 26 26 C 1.39757 * 119.81620 * 0.24956 * 23 22 21 27 27 C 1.37732 * 119.90111 * 359.51698 * 26 23 22 28 28 N 1.36464 * 126.46847 * 179.97438 * 14 12 2 29 29 C 1.46498 * 127.13623 * 0.06549 * 28 14 12 30 30 H 1.08997 * 109.47617 * 59.99718 * 1 2 3 31 31 H 1.09007 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46760 * 299.99241 * 1 2 3 33 33 H 0.96999 * 120.00381 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46538 * 296.03944 * 13 12 2 35 35 H 1.08994 * 109.47437 * 56.04194 * 13 12 2 36 36 H 1.08995 * 109.47004 * 176.04564 * 13 12 2 37 37 H 1.09005 * 109.47304 * 149.69294 * 18 17 16 38 38 H 1.09004 * 109.46867 * 29.69695 * 18 17 16 39 39 H 1.08003 * 119.94972 * 359.97438 * 21 20 19 40 40 H 1.07996 * 120.04689 * 179.97438 * 22 21 20 41 41 H 1.07993 * 120.05198 * 179.74294 * 26 23 22 42 42 H 1.08003 * 119.95532 * 180.22976 * 27 26 23 43 43 H 1.09002 * 109.46818 * 269.98983 * 29 28 14 44 44 H 1.08990 * 109.47190 * 29.99192 * 29 28 14 45 45 H 1.09002 * 109.46707 * 149.99765 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9425 0.8298 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 3.1453 -2.2873 -3.6040 10 1 1.1658 -1.5863 -4.8162 11 1 3.1463 -0.1869 -4.8166 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0762 1.2458 14 6 1.6698 -0.0023 2.3490 15 7 0.9931 1.1202 2.4094 16 7 0.8437 1.4745 3.6358 17 6 1.4197 0.6113 4.4236 18 6 1.4717 0.6712 5.9285 19 8 2.6389 1.3876 6.3367 20 6 2.8370 1.5336 7.6717 21 6 3.9531 2.2194 8.1356 22 6 4.1577 2.3704 9.4893 23 6 3.2411 1.8322 10.3967 24 6 3.4500 1.9863 11.8050 25 7 3.6178 2.1051 12.9222 26 6 2.1230 1.1383 9.9260 27 6 1.9236 0.9962 8.5706 28 7 1.9628 -0.3626 3.6322 29 6 2.7059 -1.5465 4.0706 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 0.7084 1.1615 -3.4843 34 1 0.4421 -2.0731 1.3346 35 1 1.8168 -2.5950 0.3316 36 1 1.9619 -2.5869 2.1056 37 1 1.5071 -0.3410 6.3315 38 1 0.5835 1.1804 6.3027 39 1 4.6611 2.6346 7.4337 40 1 5.0255 2.9031 9.8489 41 1 1.4145 0.7174 10.6239 42 1 1.0579 0.4633 8.2058 43 1 2.0123 -2.3721 4.2306 44 1 3.4310 -1.8242 3.3058 45 1 3.2269 -1.3241 5.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290343302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:39 Heat of formation + Delta-G solvation = 110.039958 kcal Electronic energy + Delta-G solvation = -28373.759112 eV Core-core repulsion = 24393.911209 eV Total energy + Delta-G solvation = -3979.847903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.99970 -41.24885 -39.20697 -38.89412 -37.17611 -36.06190 -34.78675 -32.66079 -32.02655 -31.14978 -30.58678 -29.01543 -27.98689 -27.22695 -26.47458 -24.37537 -23.86253 -23.48303 -21.77276 -21.20384 -19.88250 -19.30495 -18.37888 -17.95576 -17.42244 -17.33738 -17.02046 -16.74678 -16.27031 -15.83647 -15.55914 -15.25014 -15.09792 -14.97051 -14.89431 -14.51439 -14.48308 -14.23851 -14.01542 -13.75675 -13.51938 -13.42945 -13.32476 -13.08858 -13.02391 -12.89989 -12.68557 -12.45430 -12.36261 -12.12261 -12.05142 -11.97422 -11.87025 -11.37283 -11.11371 -10.87900 -10.69995 -10.50319 -10.06757 -9.27617 -9.06077 -8.11198 -6.26199 -0.14360 0.36015 0.60668 1.27223 1.45979 1.47846 1.59299 1.66720 1.70781 1.94897 2.36214 2.44235 2.90351 2.93924 3.02101 3.19045 3.30469 3.66182 3.78557 3.88360 3.94724 4.05005 4.15957 4.24425 4.35883 4.43277 4.47931 4.52082 4.58833 4.61082 4.71369 4.78926 4.96298 5.02197 5.02715 5.05066 5.09708 5.15610 5.25568 5.36695 5.44018 5.60037 5.61388 5.62063 5.85351 6.04670 6.22166 6.28216 6.50913 6.56473 6.83510 7.42815 7.81046 8.95683 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033821 B = 0.001892 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.690334 B =14797.432178 C =14859.310657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.238 3.762 3 H 0.004 0.996 4 C -0.523 4.523 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.969 3.031 9 H -0.258 1.258 10 H -0.281 1.281 11 H -0.286 1.286 12 N -0.454 5.454 13 C 0.030 3.970 14 C 0.377 3.623 15 N -0.366 5.366 16 N -0.304 5.304 17 C 0.155 3.845 18 C 0.161 3.839 19 O -0.324 6.324 20 C 0.156 3.844 21 C -0.161 4.161 22 C -0.021 4.021 23 C -0.085 4.085 24 C 0.285 3.715 25 N -0.477 5.477 26 C -0.018 4.018 27 C -0.207 4.207 28 N -0.475 5.475 29 C 0.063 3.937 30 H 0.062 0.938 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.262 0.738 34 H 0.028 0.972 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.118 0.882 39 H 0.143 0.857 40 H 0.155 0.845 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.569 -7.265 23.651 24.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.132 3.868 3 H 0.022 0.978 4 C -0.562 4.562 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.794 3.206 9 H -0.182 1.182 10 H -0.207 1.207 11 H -0.212 1.212 12 N -0.177 5.177 13 C -0.116 4.116 14 C 0.020 3.980 15 N -0.212 5.212 16 N -0.145 5.145 17 C -0.113 4.113 18 C 0.085 3.915 19 O -0.236 6.236 20 C 0.109 3.891 21 C -0.180 4.180 22 C -0.042 4.042 23 C -0.089 4.089 24 C -0.029 4.029 25 N -0.153 5.153 26 C -0.038 4.038 27 C -0.225 4.225 28 N -0.172 5.172 29 C -0.078 4.078 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.161 0.839 40 H 0.172 0.828 41 H 0.175 0.825 42 H 0.183 0.817 43 H 0.126 0.874 44 H 0.112 0.888 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.648 -5.771 24.601 25.531 hybrid contribution -0.004 -0.882 -1.332 1.598 sum 3.644 -6.653 23.269 24.474 Atomic orbital electron populations 1.22176 0.99092 0.98994 1.01007 1.18964 0.91017 0.92666 0.84110 0.97787 1.21352 1.31689 1.13141 0.89988 0.90861 1.25782 0.95116 0.95678 1.02189 1.70085 1.37318 1.24126 1.24218 0.85341 0.77997 0.78603 0.78657 1.18212 1.20699 1.21203 1.59185 1.55668 1.04348 0.98514 1.22573 0.98151 0.86075 1.04793 1.23245 0.95334 0.94235 0.85179 1.74777 1.20076 1.14063 1.12259 1.73843 1.20337 1.23641 0.96673 1.24538 1.01470 0.89107 0.96207 1.20975 0.88691 0.99798 0.82064 1.86125 1.44220 1.71882 1.21416 1.19485 0.94409 0.93480 0.81678 1.20509 0.98294 1.03451 0.95745 1.21100 0.97551 0.94670 0.90854 1.16019 1.00462 1.08745 0.83641 1.25882 0.92248 0.92056 0.92698 1.81299 1.09659 1.10912 1.13467 1.21187 0.94309 0.92822 0.95507 1.21444 1.01902 1.06314 0.92870 1.46234 1.43898 1.22719 1.04323 1.22563 0.97357 0.84312 1.03542 0.91964 0.94858 0.94682 0.92846 0.95340 0.89214 0.88631 0.85454 0.86433 0.83891 0.82754 0.82482 0.81703 0.87386 0.88790 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.83 8.26 71.98 0.59 -7.24 16 2 C 0.24 12.30 2.03 44.17 0.09 12.39 16 3 H 0.00 0.25 7.95 -2.39 -0.02 0.24 16 4 C -0.52 -27.60 7.88 25.60 0.20 -27.39 16 5 H 0.07 3.65 6.77 -2.91 -0.02 3.63 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 8 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 9 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 12 N -0.45 -18.87 4.80 -711.02 -3.42 -22.29 16 13 C 0.03 0.99 8.60 127.69 1.10 2.09 16 14 C 0.38 14.93 6.75 260.11 1.76 16.69 16 15 N -0.37 -16.78 9.32 -58.00 -0.54 -17.32 16 16 N -0.30 -11.91 12.18 -49.54 -0.60 -12.51 16 17 C 0.16 4.33 7.70 137.64 1.06 5.39 16 18 C 0.16 2.40 4.94 71.23 0.35 2.75 16 19 O -0.32 -5.67 10.11 -90.80 -0.92 -6.59 16 20 C 0.16 1.93 6.69 22.62 0.15 2.08 16 21 C -0.16 -1.85 9.97 22.32 0.22 -1.63 16 22 C -0.02 -0.20 9.75 22.52 0.22 0.02 16 23 C -0.08 -0.86 5.74 -21.30 -0.12 -0.98 16 24 C 0.29 4.29 15.33 88.33 1.35 5.64 16 25 N -0.48 -9.99 18.54 19.00 0.35 -9.64 16 26 C -0.02 -0.13 9.75 22.52 0.22 0.09 16 27 C -0.21 -1.50 9.01 22.33 0.20 -1.30 16 28 N -0.48 -13.24 3.21 -538.20 -1.73 -14.97 16 29 C 0.06 0.94 9.20 127.77 1.18 2.12 16 30 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 31 H 0.03 1.56 6.47 -2.38 -0.02 1.54 16 32 H 0.03 1.77 5.88 -2.38 -0.01 1.76 16 33 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 34 H 0.03 0.96 6.51 -2.39 -0.02 0.94 16 35 H 0.09 3.06 6.41 -2.39 -0.02 3.05 16 36 H 0.10 2.18 5.41 -2.39 -0.01 2.17 16 37 H 0.13 0.74 7.43 -2.38 -0.02 0.73 16 38 H 0.12 1.39 7.65 -2.39 -0.02 1.37 16 39 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 40 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 41 H 0.16 0.44 8.06 -2.91 -0.02 0.41 16 42 H 0.17 0.36 6.28 -2.91 -0.02 0.34 16 43 H 0.11 1.00 7.85 -2.39 -0.02 0.98 16 44 H 0.09 1.56 7.57 -2.39 -0.02 1.54 16 45 H 0.12 1.06 7.88 -2.39 -0.02 1.04 16 Total: -1.00 -79.35 375.84 5.48 -73.86 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.04 Total: 6.46 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 9.02 Total: 11.80 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -5.69 Total: -129.68 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.92 Total: -6.59 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -79.35 5.48 -73.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290343302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.903 kcal (2) G-P(sol) polarization free energy of solvation -79.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds