Wall clock time and date at job start Wed Apr 1 2020 00:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47488 * 2 1 4 4 C 1.50694 * 109.46849 * 120.00087 * 2 1 3 5 5 H 1.08008 * 120.00118 * 119.99785 * 4 2 1 6 6 C 1.37877 * 120.00149 * 299.99935 * 4 2 1 7 7 N 1.31514 * 120.00052 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00213 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46871 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47075 * 119.99784 * 8 6 4 11 11 H 1.48498 * 109.46869 * 239.99999 * 8 6 4 12 12 N 1.46899 * 109.47092 * 240.00064 * 2 1 3 13 13 C 1.46903 * 111.00128 * 183.95538 * 12 2 1 14 14 C 1.38578 * 111.00426 * 59.99819 * 12 2 1 15 15 N 1.31224 * 126.46776 * 0.03106 * 14 12 2 16 16 N 1.28524 * 109.85722 * 179.97438 * 15 14 12 17 17 C 1.30298 * 110.05708 * 359.97438 * 16 15 14 18 18 C 1.50699 * 126.34965 * 179.97438 * 17 16 15 19 19 O 1.42905 * 109.46972 * 90.02669 * 18 17 16 20 20 C 1.35758 * 116.99785 * 180.02562 * 19 18 17 21 21 C 1.38959 * 119.90379 * 359.72560 * 20 19 18 22 22 C 1.37739 * 120.09316 * 179.72780 * 21 20 19 23 23 C 1.39756 * 119.90179 * 0.54122 * 22 21 20 24 24 C 1.43196 * 120.09440 * 179.70422 * 23 22 21 25 25 N 9.71127 * 162.93923 * 70.96090 * 16 1 2 26 26 C 1.39759 * 119.81171 * 359.73114 * 23 22 21 27 27 C 1.37727 * 119.90625 * 359.97438 * 26 23 22 28 28 N 1.36450 * 126.47618 * 180.30904 * 14 12 2 29 29 C 1.46495 * 127.13668 * 0.02562 * 28 14 12 30 30 H 1.09002 * 109.47053 * 60.00155 * 1 2 3 31 31 H 1.08998 * 109.47488 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47364 * 300.00397 * 1 2 3 33 33 H 0.97004 * 120.00346 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47309 * 296.04933 * 13 12 2 35 35 H 1.09006 * 109.47123 * 56.04521 * 13 12 2 36 36 H 1.08996 * 109.47523 * 176.03933 * 13 12 2 37 37 H 1.09000 * 109.47247 * 330.02604 * 18 17 16 38 38 H 1.09001 * 109.47358 * 210.02031 * 18 17 16 39 39 H 1.08002 * 119.95677 * 359.97394 * 21 20 19 40 40 H 1.07997 * 120.05368 * 180.25270 * 22 21 20 41 41 H 1.08003 * 120.04887 * 179.97438 * 26 23 22 42 42 H 1.08003 * 119.95808 * 179.97438 * 27 26 23 43 43 H 1.08995 * 109.47818 * 270.18321 * 29 28 14 44 44 H 1.09000 * 109.47253 * 30.18423 * 29 28 14 45 45 H 1.09003 * 109.46910 * 150.18158 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1472 -2.2864 3.6038 10 1 3.1471 -0.1859 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1871 14 6 1.5754 -0.0642 -2.3519 15 7 0.8190 1.0064 -2.4145 16 7 0.6008 1.3155 -3.6428 17 6 1.2004 0.4680 -4.4302 18 6 1.1877 0.4857 -5.9371 19 8 2.2839 1.2690 -6.4135 20 6 2.4175 1.3879 -7.7592 21 6 1.5123 0.7566 -8.6037 22 6 1.6409 0.8793 -9.9696 23 6 2.6902 1.6306 -10.5059 24 6 2.8314 1.7556 -11.9254 25 7 2.9425 1.8499 -13.0524 26 6 3.6016 2.2591 -9.6530 27 6 3.4621 2.1363 -8.2883 28 7 1.8373 -0.4448 -3.6358 29 6 2.6380 -1.5912 -4.0725 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.7095 1.1618 3.4844 34 1 3.9193 0.2043 -1.2300 35 1 3.8070 -1.2916 -0.2719 36 1 3.8164 -1.3722 -2.0499 37 1 0.2514 0.9200 -6.2874 38 1 1.2788 -0.5333 -6.3132 39 1 0.7045 0.1722 -8.1885 40 1 0.9347 0.3917 -10.6252 41 1 4.4141 2.8404 -10.0633 42 1 4.1661 2.6213 -7.6284 43 1 3.6791 -1.2873 -4.1807 44 1 2.5671 -2.3874 -3.3314 45 1 2.2635 -1.9521 -5.0305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290343304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:42 Heat of formation + Delta-G solvation = 130.550089 kcal Electronic energy + Delta-G solvation = -28374.112078 eV Core-core repulsion = 24395.153561 eV Total energy + Delta-G solvation = -3978.958517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.69245 -40.68321 -38.41408 -37.25734 -36.47950 -34.87478 -32.96070 -31.91970 -31.35803 -30.24414 -29.31929 -27.92087 -27.03941 -25.32289 -24.36066 -23.83494 -23.27326 -21.97879 -20.67603 -19.67833 -19.37139 -18.68221 -17.10761 -16.70760 -16.37103 -16.06884 -15.95259 -15.32606 -15.20386 -14.76980 -14.54519 -14.40614 -14.31313 -14.06283 -14.03793 -13.64429 -13.28277 -13.14493 -13.02153 -12.79154 -12.74416 -12.51188 -12.43129 -11.93640 -11.46855 -11.42603 -11.32553 -11.07943 -10.93536 -10.63774 -10.53191 -10.27413 -10.11050 -10.00530 -9.69223 -9.65222 -9.54290 -8.73474 -8.72958 -8.51564 -7.52340 -6.09648 -4.18154 0.37081 0.77441 1.72148 2.30116 2.45208 2.52509 2.81773 3.23997 3.32045 3.34304 3.39264 3.41115 3.52103 4.10613 4.21271 4.25586 4.37042 4.43856 4.51504 4.56143 4.63176 4.82062 4.93948 5.01594 5.05882 5.21883 5.28585 5.40936 5.50029 5.51404 5.62345 5.71621 5.80818 5.90621 5.96019 6.05910 6.18684 6.36819 6.68719 6.84012 6.94421 7.07998 7.12618 7.28921 7.37454 7.59089 7.67783 7.90382 8.22778 8.35341 8.82765 9.16990 9.46775 10.96389 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035659 B = 0.001905 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.036502 B =14695.753015 C =14901.284326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.229 3.771 3 H 0.023 0.977 4 C -0.520 4.520 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.881 5.881 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.453 5.453 13 C 0.032 3.968 14 C 0.400 3.600 15 N -0.311 5.311 16 N -0.252 5.252 17 C 0.125 3.875 18 C 0.162 3.838 19 O -0.302 6.302 20 C 0.170 3.830 21 C -0.214 4.214 22 C -0.025 4.025 23 C -0.077 4.077 24 C 0.260 3.740 25 N -0.427 5.427 26 C -0.028 4.028 27 C -0.152 4.152 28 N -0.485 5.485 29 C 0.078 3.922 30 H 0.045 0.955 31 H 0.023 0.977 32 H 0.088 0.912 33 H 0.263 0.737 34 H 0.031 0.969 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.690 -3.364 -21.554 22.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.125 3.875 3 H 0.041 0.959 4 C -0.558 4.558 5 H 0.084 0.916 6 C -0.138 4.138 7 N -0.519 5.519 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.177 5.177 13 C -0.115 4.115 14 C 0.045 3.955 15 N -0.157 5.157 16 N -0.095 5.095 17 C -0.141 4.141 18 C 0.085 3.915 19 O -0.213 6.213 20 C 0.122 3.878 21 C -0.233 4.233 22 C -0.045 4.045 23 C -0.081 4.081 24 C -0.055 4.055 25 N -0.103 5.103 26 C -0.048 4.048 27 C -0.171 4.171 28 N -0.183 5.183 29 C -0.065 4.065 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.159 0.841 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.909 -2.358 -22.497 22.955 hybrid contribution 1.113 -1.182 0.915 1.864 sum 5.022 -3.540 -21.582 22.440 Atomic orbital electron populations 1.21988 0.96429 0.99340 1.02503 1.19420 0.93675 0.92454 0.81907 0.95948 1.21081 1.32379 1.12872 0.89502 0.91645 1.24902 0.94941 0.94995 0.98991 1.69932 1.35838 1.22454 1.23658 0.86413 0.78618 0.79480 0.82703 1.19747 1.20983 1.20898 1.59066 1.10792 1.48176 0.99646 1.22456 0.84976 1.00741 1.03320 1.23368 0.97329 0.90644 0.84123 1.74945 1.20100 1.10679 1.10007 1.73959 1.18238 1.20311 0.96969 1.23433 1.03283 0.93375 0.94039 1.20644 0.89916 0.95643 0.85276 1.86196 1.48622 1.67792 1.18664 1.19311 0.93448 0.92650 0.82394 1.21239 1.02346 1.06032 0.93670 1.20947 0.94860 0.94071 0.94642 1.15908 1.00763 1.06847 0.84586 1.25672 0.93677 0.93530 0.92586 1.81289 1.08077 1.08906 1.12001 1.20974 0.96713 0.95320 0.91804 1.20407 0.99250 1.02681 0.94741 1.46000 1.41589 1.24624 1.06061 1.22064 0.95223 0.87291 1.01943 0.93610 0.95740 0.89379 0.92703 0.95009 0.88128 0.93051 0.88072 0.90063 0.84120 0.84616 0.84249 0.83880 0.90443 0.88506 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.77 37.16 0.33 -3.34 16 2 C 0.23 5.72 1.73 -68.87 -0.12 5.60 16 3 H 0.02 0.64 8.11 -51.93 -0.42 0.22 16 4 C -0.52 -13.48 7.88 -34.44 -0.27 -13.75 16 5 H 0.07 1.63 6.41 -52.48 -0.34 1.30 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -24.63 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.45 -9.38 4.69 -176.08 -0.83 -10.20 16 13 C 0.03 0.56 9.09 60.07 0.55 1.10 16 14 C 0.40 7.90 6.75 -318.87 -2.15 5.75 16 15 N -0.31 -6.86 9.00 30.31 0.27 -6.59 16 16 N -0.25 -4.87 12.18 32.99 0.40 -4.47 16 17 C 0.12 1.85 7.70 -154.01 -1.19 0.67 16 18 C 0.16 1.51 5.10 36.01 0.18 1.70 16 19 O -0.30 -3.02 10.11 -18.98 -0.19 -3.22 16 20 C 0.17 1.29 6.69 -39.04 -0.26 1.03 16 21 C -0.21 -1.22 9.01 -39.50 -0.36 -1.57 16 22 C -0.02 -0.13 9.75 -39.20 -0.38 -0.51 16 23 C -0.08 -0.49 5.74 -106.84 -0.61 -1.10 16 24 C 0.26 2.16 15.33 -22.46 -0.34 1.82 16 25 N -0.43 -4.64 18.54 41.85 0.78 -3.87 16 26 C -0.03 -0.16 9.75 -39.20 -0.38 -0.54 16 27 C -0.15 -1.01 9.97 -39.50 -0.39 -1.40 16 28 N -0.48 -7.27 3.21 -121.46 -0.39 -7.66 16 29 C 0.08 0.75 9.34 59.84 0.56 1.31 16 30 H 0.05 1.14 5.43 -51.93 -0.28 0.86 16 31 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 33 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 1.79 6.10 -51.93 -0.32 1.48 16 36 H 0.05 0.68 5.44 -51.93 -0.28 0.40 16 37 H 0.10 0.80 7.66 -51.93 -0.40 0.40 16 38 H 0.08 0.49 6.76 -51.93 -0.35 0.14 16 39 H 0.14 0.54 6.28 -52.49 -0.33 0.21 16 40 H 0.14 0.48 8.06 -52.49 -0.42 0.05 16 41 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 42 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 43 H 0.08 0.64 7.84 -51.93 -0.41 0.24 16 44 H 0.10 0.95 7.60 -51.93 -0.39 0.55 16 45 H 0.08 0.53 7.25 -51.93 -0.38 0.16 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -33.59 377.51 -9.06 -42.65 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -5.46 Total: -2.04 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -4.94 Total: -1.63 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: 0.86 Total: -56.79 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: -0.19 Total: -3.22 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.59 -9.06 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290343304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.205 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds