Wall clock time and date at job start Wed Apr 1 2020 00:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47488 * 2 1 4 4 C 1.50694 * 109.46849 * 120.00087 * 2 1 3 5 5 H 1.08008 * 120.00118 * 119.99785 * 4 2 1 6 6 C 1.37877 * 120.00149 * 299.99935 * 4 2 1 7 7 N 1.31514 * 120.00052 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00213 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46871 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47075 * 119.99784 * 8 6 4 11 11 H 1.48498 * 109.46869 * 239.99999 * 8 6 4 12 12 N 1.46899 * 109.47092 * 240.00064 * 2 1 3 13 13 C 1.46903 * 111.00128 * 183.95538 * 12 2 1 14 14 C 1.38578 * 111.00426 * 59.99819 * 12 2 1 15 15 N 1.31224 * 126.46776 * 0.03106 * 14 12 2 16 16 N 1.28524 * 109.85722 * 179.97438 * 15 14 12 17 17 C 1.30298 * 110.05708 * 359.97438 * 16 15 14 18 18 C 1.50699 * 126.34965 * 179.97438 * 17 16 15 19 19 O 1.42905 * 109.46972 * 90.02669 * 18 17 16 20 20 C 1.35758 * 116.99785 * 180.02562 * 19 18 17 21 21 C 1.38959 * 119.90379 * 359.72560 * 20 19 18 22 22 C 1.37739 * 120.09316 * 179.72780 * 21 20 19 23 23 C 1.39756 * 119.90179 * 0.54122 * 22 21 20 24 24 C 1.43196 * 120.09440 * 179.70422 * 23 22 21 25 25 N 9.71127 * 162.93923 * 70.96090 * 16 1 2 26 26 C 1.39759 * 119.81171 * 359.73114 * 23 22 21 27 27 C 1.37727 * 119.90625 * 359.97438 * 26 23 22 28 28 N 1.36450 * 126.47618 * 180.30904 * 14 12 2 29 29 C 1.46495 * 127.13668 * 0.02562 * 28 14 12 30 30 H 1.09002 * 109.47053 * 60.00155 * 1 2 3 31 31 H 1.08998 * 109.47488 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47364 * 300.00397 * 1 2 3 33 33 H 0.97004 * 120.00346 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47309 * 296.04933 * 13 12 2 35 35 H 1.09006 * 109.47123 * 56.04521 * 13 12 2 36 36 H 1.08996 * 109.47523 * 176.03933 * 13 12 2 37 37 H 1.09000 * 109.47247 * 330.02604 * 18 17 16 38 38 H 1.09001 * 109.47358 * 210.02031 * 18 17 16 39 39 H 1.08002 * 119.95677 * 359.97394 * 21 20 19 40 40 H 1.07997 * 120.05368 * 180.25270 * 22 21 20 41 41 H 1.08003 * 120.04887 * 179.97438 * 26 23 22 42 42 H 1.08003 * 119.95808 * 179.97438 * 27 26 23 43 43 H 1.08995 * 109.47818 * 270.18321 * 29 28 14 44 44 H 1.09000 * 109.47253 * 30.18423 * 29 28 14 45 45 H 1.09003 * 109.46910 * 150.18158 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.1472 -2.2864 3.6038 10 1 3.1471 -0.1859 4.8161 11 1 1.1676 -1.5866 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 3.4851 -0.7946 -1.1871 14 6 1.5754 -0.0642 -2.3519 15 7 0.8190 1.0064 -2.4145 16 7 0.6008 1.3155 -3.6428 17 6 1.2004 0.4680 -4.4302 18 6 1.1877 0.4857 -5.9371 19 8 2.2839 1.2690 -6.4135 20 6 2.4175 1.3879 -7.7592 21 6 1.5123 0.7566 -8.6037 22 6 1.6409 0.8793 -9.9696 23 6 2.6902 1.6306 -10.5059 24 6 2.8314 1.7556 -11.9254 25 7 2.9425 1.8499 -13.0524 26 6 3.6016 2.2591 -9.6530 27 6 3.4621 2.1363 -8.2883 28 7 1.8373 -0.4448 -3.6358 29 6 2.6380 -1.5912 -4.0725 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 0.7095 1.1618 3.4844 34 1 3.9193 0.2043 -1.2300 35 1 3.8070 -1.2916 -0.2719 36 1 3.8164 -1.3722 -2.0499 37 1 0.2514 0.9200 -6.2874 38 1 1.2788 -0.5333 -6.3132 39 1 0.7045 0.1722 -8.1885 40 1 0.9347 0.3917 -10.6252 41 1 4.4141 2.8404 -10.0633 42 1 4.1661 2.6213 -7.6284 43 1 3.6791 -1.2873 -4.1807 44 1 2.5671 -2.3874 -3.3314 45 1 2.2635 -1.9521 -5.0305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290343304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:41 Heat of formation + Delta-G solvation = 111.293259 kcal Electronic energy + Delta-G solvation = -28374.947117 eV Core-core repulsion = 24395.153561 eV Total energy + Delta-G solvation = -3979.793555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.00880 -41.24623 -39.11244 -38.79777 -37.16842 -36.09755 -34.82413 -32.63580 -32.01275 -31.20453 -31.05608 -29.03298 -28.05661 -27.08037 -25.94266 -24.37728 -23.89610 -23.57391 -21.78227 -21.27438 -19.88255 -19.30907 -18.54255 -17.97329 -17.46952 -17.29006 -17.02263 -16.69627 -16.19397 -15.81742 -15.63736 -15.39856 -15.05450 -14.96860 -14.86719 -14.57298 -14.48268 -14.22568 -13.94942 -13.86651 -13.63588 -13.41299 -13.33872 -13.07320 -12.97840 -12.84347 -12.70243 -12.26669 -12.23616 -12.10426 -12.04045 -12.00999 -11.87763 -11.48321 -11.10143 -11.01203 -10.58287 -10.50997 -10.06665 -9.27421 -9.10434 -8.11851 -6.27616 -0.14288 0.36103 0.59569 1.29283 1.45966 1.47431 1.58973 1.64301 1.66543 1.94831 2.37160 2.43324 2.90399 2.93503 2.98009 3.19361 3.29669 3.69351 3.76597 3.85075 3.94784 4.03023 4.14565 4.22311 4.36420 4.42316 4.47897 4.48369 4.60857 4.62355 4.73427 4.85110 4.91811 4.97048 5.02569 5.05260 5.16632 5.25538 5.30699 5.36788 5.41541 5.53364 5.60819 5.66641 5.93487 5.98115 6.17867 6.27993 6.50954 6.55792 6.82374 7.41429 7.80071 8.94916 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.035659 B = 0.001905 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.036502 B =14695.753015 C =14901.284326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.241 3.759 3 H -0.024 1.024 4 C -0.527 4.527 5 H 0.076 0.924 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.970 3.030 9 H -0.257 1.257 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.454 5.454 13 C 0.033 3.967 14 C 0.376 3.624 15 N -0.364 5.364 16 N -0.304 5.304 17 C 0.156 3.844 18 C 0.162 3.838 19 O -0.323 6.323 20 C 0.157 3.843 21 C -0.207 4.207 22 C -0.018 4.018 23 C -0.085 4.085 24 C 0.285 3.715 25 N -0.477 5.477 26 C -0.021 4.021 27 C -0.161 4.161 28 N -0.474 5.474 29 C 0.063 3.937 30 H 0.046 0.954 31 H 0.022 0.978 32 H 0.060 0.940 33 H 0.263 0.737 34 H 0.016 0.984 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.144 0.856 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.702 -5.809 -23.623 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.135 3.865 3 H -0.007 1.007 4 C -0.566 4.566 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.795 3.205 9 H -0.181 1.181 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.177 5.177 13 C -0.113 4.113 14 C 0.019 3.981 15 N -0.209 5.209 16 N -0.145 5.145 17 C -0.112 4.112 18 C 0.085 3.915 19 O -0.235 6.235 20 C 0.110 3.890 21 C -0.226 4.226 22 C -0.039 4.039 23 C -0.089 4.089 24 C -0.029 4.029 25 N -0.154 5.154 26 C -0.042 4.042 27 C -0.179 4.179 28 N -0.171 5.171 29 C -0.078 4.078 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.182 0.818 40 H 0.175 0.825 41 H 0.173 0.827 42 H 0.162 0.838 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.942 -4.823 -24.613 25.564 hybrid contribution 0.834 -0.381 1.348 1.630 sum 5.777 -5.204 -23.265 24.530 Atomic orbital electron populations 1.21781 0.97246 0.98568 1.01132 1.18979 0.92991 0.90403 0.84079 1.00677 1.21406 1.32164 1.12975 0.90007 0.90575 1.25809 0.95085 0.95639 1.02265 1.70095 1.37231 1.24121 1.24258 0.85326 0.78008 0.78620 0.78565 1.18102 1.20882 1.20953 1.58965 1.12440 1.47582 0.98747 1.22544 0.83186 1.00502 1.05073 1.23181 0.98325 0.91170 0.85452 1.74752 1.21579 1.12503 1.12099 1.73851 1.21254 1.22748 0.96657 1.24490 0.99645 0.90937 0.96164 1.20970 0.90739 0.98419 0.81372 1.86119 1.48710 1.68434 1.20213 1.19483 0.94397 0.93636 0.81506 1.21442 1.02229 1.05523 0.93399 1.21185 0.94520 0.93246 0.94902 1.16018 1.01665 1.07734 0.83464 1.25901 0.92216 0.92069 0.92711 1.81317 1.09799 1.10745 1.13501 1.21106 0.96853 0.94889 0.91318 1.20506 0.99441 1.02892 0.95090 1.46239 1.41162 1.25528 1.04129 1.22569 0.95807 0.85458 1.03944 0.93578 0.95908 0.92151 0.92808 0.96554 0.88807 0.88498 0.86466 0.85531 0.81762 0.82550 0.82722 0.83800 0.88547 0.88440 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 8.77 71.98 0.63 -6.25 16 2 C 0.24 12.55 1.73 44.17 0.08 12.63 16 3 H -0.02 -1.47 8.11 -2.39 -0.02 -1.49 16 4 C -0.53 -27.87 7.88 25.60 0.20 -27.66 16 5 H 0.08 3.77 6.41 -2.91 -0.02 3.76 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -53.37 11.32 21.45 0.24 -53.13 16 8 Si 0.97 42.07 29.54 68.60 2.03 44.09 16 9 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 N -0.45 -18.99 4.69 -711.00 -3.33 -22.32 16 13 C 0.03 1.14 9.09 127.69 1.16 2.30 16 14 C 0.38 14.93 6.75 260.11 1.76 16.69 16 15 N -0.36 -16.67 9.00 -58.00 -0.52 -17.19 16 16 N -0.30 -11.89 12.18 -49.53 -0.60 -12.49 16 17 C 0.16 4.34 7.70 137.64 1.06 5.40 16 18 C 0.16 2.38 5.10 71.24 0.36 2.75 16 19 O -0.32 -5.47 10.11 -90.84 -0.92 -6.39 16 20 C 0.16 1.87 6.69 22.62 0.15 2.02 16 21 C -0.21 -1.49 9.01 22.32 0.20 -1.28 16 22 C -0.02 -0.13 9.75 22.52 0.22 0.09 16 23 C -0.08 -0.85 5.74 -21.30 -0.12 -0.97 16 24 C 0.28 4.25 15.33 88.33 1.35 5.60 16 25 N -0.48 -9.95 18.54 19.01 0.35 -9.60 16 26 C -0.02 -0.19 9.75 22.52 0.22 0.03 16 27 C -0.16 -1.76 9.97 22.32 0.22 -1.53 16 28 N -0.47 -13.22 3.21 -538.19 -1.73 -14.95 16 29 C 0.06 0.94 9.34 127.77 1.19 2.14 16 30 H 0.05 2.43 5.43 -2.39 -0.01 2.42 16 31 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 3.52 6.07 -2.39 -0.01 3.51 16 33 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 34 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 3.29 6.10 -2.38 -0.01 3.27 16 36 H 0.10 2.34 5.44 -2.39 -0.01 2.32 16 37 H 0.12 1.39 7.66 -2.39 -0.02 1.37 16 38 H 0.13 0.73 6.76 -2.39 -0.02 0.72 16 39 H 0.16 0.36 6.28 -2.91 -0.02 0.35 16 40 H 0.16 0.45 8.06 -2.91 -0.02 0.42 16 41 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 42 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.10 1.15 7.84 -2.39 -0.02 1.13 16 44 H 0.10 1.53 7.60 -2.39 -0.02 1.51 16 45 H 0.13 0.84 7.25 -2.39 -0.02 0.83 16 Total: -1.00 -79.58 377.51 5.70 -73.88 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: 1.04 Total: 5.08 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 9.14 Total: 13.02 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -5.59 Total: -129.67 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.92 Total: -6.39 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -79.58 5.70 -73.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290343304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.172 kcal (2) G-P(sol) polarization free energy of solvation -79.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds