Wall clock time and date at job start Wed Apr 1 2020 00:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 119.99844 * 2 1 4 4 N 1.46499 * 109.47221 * 124.99967 * 3 2 1 5 5 C 1.46498 * 119.99804 * 265.73660 * 4 3 2 6 6 C 1.50702 * 109.47616 * 275.48873 * 5 4 3 7 7 H 1.07999 * 119.99558 * 359.97438 * 6 5 4 8 8 C 1.37868 * 120.00267 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00287 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 120.00196 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47130 * 89.99957 * 10 8 6 12 12 H 1.48499 * 109.47112 * 209.99773 * 10 8 6 13 13 H 1.48493 * 109.46741 * 330.00019 * 10 8 6 14 14 C 1.34768 * 120.00036 * 85.73976 * 4 3 2 15 15 O 1.21285 * 120.00280 * 4.26587 * 14 4 3 16 16 C 1.50702 * 119.99963 * 184.26127 * 14 4 3 17 17 H 1.08997 * 109.47705 * 314.07928 * 16 14 4 18 18 C 1.53007 * 109.46791 * 74.07764 * 16 14 4 19 19 N 1.46503 * 109.47430 * 194.07140 * 16 14 4 20 20 N 1.28731 * 125.34087 * 299.98451 * 19 16 14 21 21 N 1.28991 * 108.94049 * 179.74071 * 20 19 16 22 22 C 1.34046 * 107.26684 * 0.42857 * 21 20 19 23 23 C 1.48472 * 126.67069 * 179.83452 * 22 21 20 24 24 C 1.39299 * 120.11811 * 359.68932 * 23 22 21 25 25 C 1.38023 * 119.87800 * 179.97438 * 24 23 22 26 26 C 1.38312 * 120.12214 * 359.97438 * 25 24 23 27 27 C 1.38311 * 120.23501 * 0.28178 * 26 25 24 28 28 C 1.38033 * 120.11869 * 359.48587 * 27 26 25 29 29 N 1.28873 * 125.33992 * 119.99735 * 19 16 14 30 30 H 1.07996 * 120.00516 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.99627 * 179.97438 * 1 2 3 32 32 H 1.08005 * 120.00553 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.47236 * 4.99842 * 3 2 1 34 34 H 1.08999 * 109.47258 * 244.99907 * 3 2 1 35 35 H 1.09000 * 109.47395 * 35.49032 * 5 4 3 36 36 H 1.08999 * 109.47252 * 155.48799 * 5 4 3 37 37 H 0.97003 * 120.00511 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47452 * 64.37538 * 18 16 14 39 39 H 1.09002 * 109.47192 * 184.37377 * 18 16 14 40 40 H 1.09000 * 109.46900 * 304.37246 * 18 16 14 41 41 H 1.08003 * 120.05893 * 0.02562 * 24 23 22 42 42 H 1.08004 * 119.93851 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.88260 * 180.02562 * 26 25 24 44 44 H 1.07998 * 119.94408 * 179.74276 * 27 26 25 45 45 H 1.08001 * 120.06119 * 180.25513 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5900 1.9496 2.3970 6 6 2.8362 3.4350 2.3323 7 1 3.2522 3.8748 1.4379 8 6 2.5314 4.2321 3.4150 9 7 2.7467 5.5283 3.3587 10 14 1.8126 3.4712 4.9623 11 1 2.9136 3.0770 5.8776 12 1 0.9363 4.4606 5.6394 13 1 1.0166 2.2712 4.5998 14 6 4.2207 0.7886 1.0079 15 8 4.5835 0.3467 -0.0617 16 6 5.1422 0.7300 2.1989 17 1 5.1399 1.6938 2.7080 18 6 4.6615 -0.3568 3.1627 19 7 6.5014 0.4180 1.7500 20 7 6.8502 -0.6466 1.1158 21 7 8.1159 -0.5933 0.8726 22 6 8.5724 0.5561 1.3898 23 6 9.9726 1.0489 1.3569 24 6 10.9674 0.2876 0.7477 25 6 12.2673 0.7507 0.7195 26 6 12.5829 1.9685 1.2942 27 6 11.5999 2.7260 1.9051 28 6 10.2958 2.2745 1.9347 29 7 7.5355 1.1662 1.9282 30 1 -0.5401 0.9352 -0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3585 2.1317 0.0895 34 1 2.6212 1.4027 -0.9314 35 1 1.5299 1.7643 2.5700 36 1 3.1717 1.5202 3.2127 37 1 2.5319 6.0893 4.1204 38 1 4.7374 -1.3308 2.6791 39 1 5.2811 -0.3472 4.0595 40 1 3.6236 -0.1668 3.4361 41 1 10.7218 -0.6629 0.2975 42 1 13.0393 0.1614 0.2470 43 1 13.6012 2.3274 1.2696 44 1 11.8523 3.6743 2.3560 45 1 9.5283 2.8686 2.4083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292459910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:19 Heat of formation + Delta-G solvation = 151.627406 kcal Electronic energy + Delta-G solvation = -29174.096517 eV Core-core repulsion = 25196.051982 eV Total energy + Delta-G solvation = -3978.044536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.06095 -39.84304 -39.11474 -36.02483 -35.36172 -33.67941 -33.33591 -32.54920 -31.90763 -31.03139 -29.86081 -28.38066 -26.34025 -25.32632 -24.35382 -23.30134 -22.61108 -21.78134 -21.46805 -20.11176 -18.99368 -17.50858 -17.23069 -17.21143 -16.98203 -16.32799 -15.76402 -15.49972 -14.97113 -14.89804 -14.61898 -14.42322 -14.04996 -13.54139 -13.51979 -13.40016 -13.17056 -13.01123 -12.85869 -12.65550 -12.48463 -12.25646 -11.87755 -11.73443 -11.64876 -11.41726 -11.25602 -11.19297 -11.08042 -10.90867 -10.79135 -10.68859 -10.62119 -10.42879 -9.81884 -9.56933 -9.19407 -9.06667 -8.88531 -8.64385 -8.11198 -6.37017 -4.42088 0.78940 1.28928 1.53068 1.91364 2.35770 2.56971 2.82106 3.04605 3.11682 3.15592 3.49673 3.77915 3.84918 4.11146 4.35535 4.59493 4.67434 4.84033 4.89372 4.92144 4.98723 5.04383 5.16928 5.30462 5.34085 5.37746 5.45477 5.51923 5.58142 5.72417 5.80219 5.81702 5.93815 6.00300 6.02645 6.14154 6.17248 6.23608 6.35505 6.37741 6.42460 6.44807 6.74669 6.78206 6.80009 7.04890 7.22518 7.72526 8.17366 8.39928 8.59031 8.68822 9.19597 10.75108 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.003252 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.294667 B = 8607.405057 C =10188.632081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.146 3.854 4 N -0.574 5.574 5 C 0.198 3.802 6 C -0.553 4.553 7 H 0.081 0.919 8 C 0.081 3.919 9 N -0.883 5.883 10 Si 0.866 3.134 11 H -0.270 1.270 12 H -0.280 1.280 13 H -0.262 1.262 14 C 0.514 3.486 15 O -0.537 6.537 16 C 0.137 3.863 17 H 0.160 0.840 18 C -0.162 4.162 19 N -0.116 5.116 20 N -0.027 5.027 21 N -0.285 5.285 22 C 0.196 3.804 23 C -0.003 4.003 24 C -0.081 4.081 25 C -0.124 4.124 26 C -0.108 4.108 27 C -0.123 4.123 28 C -0.082 4.082 29 N -0.293 5.293 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.033 0.967 37 H 0.269 0.731 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.327 -9.179 -0.024 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.180 4.180 3 C 0.024 3.976 4 N -0.304 5.304 5 C 0.077 3.923 6 C -0.591 4.591 7 H 0.099 0.901 8 C -0.124 4.124 9 N -0.519 5.519 10 Si 0.692 3.308 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.186 1.186 14 C 0.297 3.703 15 O -0.414 6.414 16 C 0.032 3.968 17 H 0.178 0.822 18 C -0.220 4.220 19 N -0.027 5.027 20 N -0.020 5.020 21 N -0.157 5.157 22 C -0.084 4.084 23 C -0.007 4.007 24 C -0.101 4.101 25 C -0.142 4.142 26 C -0.127 4.127 27 C -0.141 4.141 28 C -0.103 4.103 29 N -0.142 5.142 30 H 0.117 0.883 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.859 -9.611 -0.570 13.084 hybrid contribution -0.214 0.320 1.034 1.103 sum 8.645 -9.291 0.464 12.699 Atomic orbital electron populations 1.23823 0.95720 1.01788 1.01187 1.23370 0.96126 0.99181 0.99287 1.20508 0.91970 0.95266 0.89862 1.47770 1.12222 1.55028 1.15395 1.20098 0.96998 0.94717 0.80448 1.21319 1.45088 0.89545 1.03179 0.90140 1.24865 0.94548 0.94658 0.98331 1.69876 1.46428 1.04148 1.31449 0.86998 0.80109 0.79930 0.83756 1.19559 1.20561 1.18620 1.19814 0.82814 0.79077 0.88562 1.90752 1.74780 1.48217 1.27675 1.21897 0.73713 1.04960 0.96190 0.82223 1.22244 1.04005 0.97547 0.98223 1.49675 1.08979 1.10306 1.33788 1.78951 1.06844 1.08374 1.07819 1.76001 1.00883 1.18444 1.20388 1.23570 0.94789 0.91007 0.99013 1.17295 0.86159 0.95468 1.01743 1.21201 0.92014 0.99726 0.97190 1.21071 0.96039 0.96612 1.00527 1.21294 0.99466 0.94689 0.97262 1.21102 0.92513 1.00298 1.00152 1.21293 0.97168 0.94425 0.97374 1.74921 0.94004 1.21826 1.23485 0.88261 0.88684 0.87553 0.88829 0.89775 0.93980 0.94918 0.92072 0.90075 0.90176 0.87918 0.84752 0.85440 0.85779 0.85354 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 14.32 29.02 0.42 -1.94 16 2 C -0.16 -2.35 9.81 -36.02 -0.35 -2.70 16 3 C 0.15 2.48 5.86 -5.19 -0.03 2.45 16 4 N -0.57 -10.78 2.45 -176.43 -0.43 -11.21 16 5 C 0.20 3.91 3.65 -5.19 -0.02 3.90 16 6 C -0.55 -13.56 9.93 -34.44 -0.34 -13.91 16 7 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 8 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.88 -24.44 13.96 55.43 0.77 -23.67 16 10 Si 0.87 18.23 27.47 -169.99 -4.67 13.56 16 11 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.26 -5.11 6.54 56.52 0.37 -4.74 16 14 C 0.51 9.97 6.93 -10.99 -0.08 9.89 16 15 O -0.54 -11.79 15.32 5.55 0.09 -11.70 16 16 C 0.14 2.38 2.78 -69.08 -0.19 2.18 16 17 H 0.16 2.85 7.28 -51.93 -0.38 2.48 16 18 C -0.16 -2.19 8.99 37.16 0.33 -1.86 16 19 N -0.12 -2.18 3.54 -5.90 -0.02 -2.20 16 20 N -0.03 -0.52 11.99 60.35 0.72 0.20 16 21 N -0.29 -5.32 12.23 32.16 0.39 -4.93 16 22 C 0.20 3.44 7.94 -156.30 -1.24 2.20 16 23 C 0.00 -0.05 5.88 -104.89 -0.62 -0.67 16 24 C -0.08 -0.99 9.70 -39.27 -0.38 -1.37 16 25 C -0.12 -1.20 10.03 -39.63 -0.40 -1.60 16 26 C -0.11 -0.98 10.04 -39.53 -0.40 -1.38 16 27 C -0.12 -1.25 10.03 -39.63 -0.40 -1.65 16 28 C -0.08 -1.06 9.70 -39.26 -0.38 -1.44 16 29 N -0.29 -5.49 11.85 32.17 0.38 -5.10 16 30 H 0.10 1.20 7.84 -52.49 -0.41 0.78 16 31 H 0.09 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.09 1.57 7.69 -51.93 -0.40 1.17 16 34 H 0.08 1.49 7.50 -51.93 -0.39 1.10 16 35 H 0.04 0.82 7.17 -51.93 -0.37 0.45 16 36 H 0.03 0.60 3.94 -51.93 -0.20 0.39 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.28 6.22 -51.93 -0.32 0.96 16 41 H 0.13 1.57 7.89 -52.48 -0.41 1.16 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.13 1.77 7.88 -52.49 -0.41 1.35 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -31.01 386.92 -6.96 -37.97 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.85 Total: 7.17 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -4.17 Total: -5.92 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 1.82 Total: -46.91 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.70 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -4.67 Total: 13.56 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.01 -6.96 -37.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292459910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.599 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds