Wall clock time and date at job start Wed Apr 1 2020 00:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 119.99844 * 2 1 4 4 N 1.46499 * 109.47221 * 124.99967 * 3 2 1 5 5 C 1.46498 * 119.99804 * 265.73660 * 4 3 2 6 6 C 1.50702 * 109.47616 * 275.48873 * 5 4 3 7 7 H 1.07999 * 119.99558 * 359.97438 * 6 5 4 8 8 C 1.37868 * 120.00267 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00287 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 120.00196 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47130 * 89.99957 * 10 8 6 12 12 H 1.48499 * 109.47112 * 209.99773 * 10 8 6 13 13 H 1.48493 * 109.46741 * 330.00019 * 10 8 6 14 14 C 1.34768 * 120.00036 * 85.73976 * 4 3 2 15 15 O 1.21285 * 120.00280 * 4.26587 * 14 4 3 16 16 C 1.50702 * 119.99963 * 184.26127 * 14 4 3 17 17 H 1.08997 * 109.47705 * 314.07928 * 16 14 4 18 18 C 1.53007 * 109.46791 * 74.07764 * 16 14 4 19 19 N 1.46503 * 109.47430 * 194.07140 * 16 14 4 20 20 N 1.28731 * 125.34087 * 299.98451 * 19 16 14 21 21 N 1.28991 * 108.94049 * 179.74071 * 20 19 16 22 22 C 1.34046 * 107.26684 * 0.42857 * 21 20 19 23 23 C 1.48472 * 126.67069 * 179.83452 * 22 21 20 24 24 C 1.39299 * 120.11811 * 359.68932 * 23 22 21 25 25 C 1.38023 * 119.87800 * 179.97438 * 24 23 22 26 26 C 1.38312 * 120.12214 * 359.97438 * 25 24 23 27 27 C 1.38311 * 120.23501 * 0.28178 * 26 25 24 28 28 C 1.38033 * 120.11869 * 359.48587 * 27 26 25 29 29 N 1.28873 * 125.33992 * 119.99735 * 19 16 14 30 30 H 1.07996 * 120.00516 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.99627 * 179.97438 * 1 2 3 32 32 H 1.08005 * 120.00553 * 179.97438 * 2 1 3 33 33 H 1.09003 * 109.47236 * 4.99842 * 3 2 1 34 34 H 1.08999 * 109.47258 * 244.99907 * 3 2 1 35 35 H 1.09000 * 109.47395 * 35.49032 * 5 4 3 36 36 H 1.08999 * 109.47252 * 155.48799 * 5 4 3 37 37 H 0.97003 * 120.00511 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47452 * 64.37538 * 18 16 14 39 39 H 1.09002 * 109.47192 * 184.37377 * 18 16 14 40 40 H 1.09000 * 109.46900 * 304.37246 * 18 16 14 41 41 H 1.08003 * 120.05893 * 0.02562 * 24 23 22 42 42 H 1.08004 * 119.93851 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.88260 * 180.02562 * 26 25 24 44 44 H 1.07998 * 119.94408 * 179.74276 * 27 26 25 45 45 H 1.08001 * 120.06119 * 180.25513 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5900 1.9496 2.3970 6 6 2.8362 3.4350 2.3323 7 1 3.2522 3.8748 1.4379 8 6 2.5314 4.2321 3.4150 9 7 2.7467 5.5283 3.3587 10 14 1.8126 3.4712 4.9623 11 1 2.9136 3.0770 5.8776 12 1 0.9363 4.4606 5.6394 13 1 1.0166 2.2712 4.5998 14 6 4.2207 0.7886 1.0079 15 8 4.5835 0.3467 -0.0617 16 6 5.1422 0.7300 2.1989 17 1 5.1399 1.6938 2.7080 18 6 4.6615 -0.3568 3.1627 19 7 6.5014 0.4180 1.7500 20 7 6.8502 -0.6466 1.1158 21 7 8.1159 -0.5933 0.8726 22 6 8.5724 0.5561 1.3898 23 6 9.9726 1.0489 1.3569 24 6 10.9674 0.2876 0.7477 25 6 12.2673 0.7507 0.7195 26 6 12.5829 1.9685 1.2942 27 6 11.5999 2.7260 1.9051 28 6 10.2958 2.2745 1.9347 29 7 7.5355 1.1662 1.9282 30 1 -0.5401 0.9352 -0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3585 2.1317 0.0895 34 1 2.6212 1.4027 -0.9314 35 1 1.5299 1.7643 2.5700 36 1 3.1717 1.5202 3.2127 37 1 2.5319 6.0893 4.1204 38 1 4.7374 -1.3308 2.6791 39 1 5.2811 -0.3472 4.0595 40 1 3.6236 -0.1668 3.4361 41 1 10.7218 -0.6629 0.2975 42 1 13.0393 0.1614 0.2470 43 1 13.6012 2.3274 1.2696 44 1 11.8523 3.6743 2.3560 45 1 9.5283 2.8686 2.4083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292459910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:19 Heat of formation + Delta-G solvation = 133.289974 kcal Electronic energy + Delta-G solvation = -29174.891688 eV Core-core repulsion = 25196.051982 eV Total energy + Delta-G solvation = -3978.839706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.46186 -41.35579 -40.00877 -37.49190 -36.80367 -35.14315 -34.66533 -34.22886 -33.09160 -31.89643 -30.98317 -30.11706 -27.65540 -26.66051 -25.53557 -24.85369 -23.93784 -22.95006 -22.55823 -21.34531 -20.33339 -19.11567 -18.78597 -18.66829 -18.24971 -17.70546 -16.96481 -16.62385 -16.46325 -16.17157 -15.87583 -15.81245 -15.12493 -14.92164 -14.69104 -14.59651 -14.34608 -14.29341 -14.12878 -13.95274 -13.79188 -13.55018 -13.32426 -13.16749 -12.98700 -12.74737 -12.49439 -12.36731 -12.33524 -12.26035 -12.22743 -11.94869 -11.89538 -11.88332 -11.71413 -11.06322 -10.80602 -10.35670 -9.92326 -9.69526 -9.65397 -8.32229 -6.43343 -0.27891 0.15111 0.43719 0.55508 1.19335 1.33839 1.35603 1.41797 1.44210 1.53234 2.07229 2.33829 2.62699 2.87545 2.98797 3.02723 3.22626 3.44368 3.62023 4.01023 4.04741 4.07332 4.11422 4.17252 4.27330 4.36116 4.38367 4.42120 4.53206 4.55523 4.57970 4.64270 4.71533 4.76785 4.86911 4.93364 4.96673 5.03100 5.11047 5.36144 5.40080 5.49616 5.50341 5.54718 5.66812 5.82723 5.98529 6.03513 6.35997 6.62874 6.87019 7.17429 7.23452 8.83940 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.003252 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.294667 B = 8607.405057 C =10188.632081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.181 4.181 3 C 0.143 3.857 4 N -0.574 5.574 5 C 0.205 3.795 6 C -0.554 4.554 7 H 0.026 0.974 8 C 0.022 3.978 9 N -0.940 5.940 10 Si 0.936 3.064 11 H -0.256 1.256 12 H -0.288 1.288 13 H -0.227 1.227 14 C 0.510 3.490 15 O -0.569 6.569 16 C 0.133 3.867 17 H 0.152 0.848 18 C -0.156 4.156 19 N -0.119 5.119 20 N -0.041 5.041 21 N -0.298 5.298 22 C 0.200 3.800 23 C -0.039 4.039 24 C -0.089 4.089 25 C -0.118 4.118 26 C -0.094 4.094 27 C -0.122 4.122 28 C -0.098 4.098 29 N -0.317 5.317 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.270 0.730 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.132 0.868 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.153 0.847 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.884 -10.911 1.553 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.201 4.201 3 C 0.022 3.978 4 N -0.303 5.303 5 C 0.084 3.916 6 C -0.592 4.592 7 H 0.044 0.956 8 C -0.178 4.178 9 N -0.579 5.579 10 Si 0.757 3.243 11 H -0.180 1.180 12 H -0.214 1.214 13 H -0.149 1.149 14 C 0.295 3.705 15 O -0.448 6.448 16 C 0.030 3.970 17 H 0.169 0.831 18 C -0.214 4.214 19 N -0.031 5.031 20 N -0.034 5.034 21 N -0.170 5.170 22 C -0.079 4.079 23 C -0.042 4.042 24 C -0.109 4.109 25 C -0.136 4.136 26 C -0.113 4.113 27 C -0.140 4.140 28 C -0.118 4.118 29 N -0.167 5.167 30 H 0.124 0.876 31 H 0.140 0.860 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.150 0.850 42 H 0.178 0.822 43 H 0.181 0.819 44 H 0.171 0.829 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.402 -11.370 0.991 14.787 hybrid contribution -0.274 0.975 0.392 1.086 sum 9.128 -10.395 1.383 13.903 Atomic orbital electron populations 1.24078 0.94794 1.03339 0.97281 1.23085 0.96719 0.97422 1.02826 1.20573 0.91648 0.97007 0.88601 1.47837 1.12468 1.54389 1.15624 1.20006 0.98343 0.91580 0.81628 1.21465 1.44211 0.92280 1.01226 0.95559 1.25831 0.94830 0.94805 1.02285 1.70056 1.48663 1.06305 1.32848 0.85895 0.79811 0.79918 0.78694 1.18027 1.21400 1.14913 1.20184 0.83016 0.78491 0.88792 1.90726 1.75346 1.49734 1.29032 1.22058 0.73073 1.06122 0.95783 0.83103 1.22327 1.05124 0.96102 0.97848 1.49803 1.09303 1.10163 1.33800 1.78877 1.07330 1.08917 1.08313 1.75954 1.00745 1.19230 1.21062 1.24229 0.95913 0.90277 0.97469 1.17519 0.85113 0.96990 1.04590 1.21336 0.92832 0.99609 0.97147 1.21471 0.95406 0.97043 0.99655 1.21772 1.00857 0.93748 0.94897 1.21430 0.91421 1.01332 0.99807 1.21330 0.98402 0.94076 0.97996 1.74914 0.94487 1.22453 1.24827 0.87633 0.86018 0.87863 0.89060 0.91670 0.92170 0.92220 0.92127 0.89786 0.88126 0.86209 0.84991 0.82150 0.81944 0.82917 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 14.32 67.79 0.97 -2.55 16 2 C -0.18 -5.12 9.81 25.65 0.25 -4.86 16 3 C 0.14 4.99 5.86 85.63 0.50 5.49 16 4 N -0.57 -21.82 2.45 -830.51 -2.04 -23.85 16 5 C 0.21 7.92 3.65 85.63 0.31 8.23 16 6 C -0.55 -27.89 9.93 25.60 0.25 -27.63 16 7 H 0.03 1.57 8.06 -2.91 -0.02 1.54 16 8 C 0.02 1.14 5.47 84.65 0.46 1.60 16 9 N -0.94 -53.99 13.96 21.44 0.30 -53.69 16 10 Si 0.94 36.31 27.47 68.60 1.88 38.19 16 11 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 12 H -0.29 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.23 -7.49 6.54 99.48 0.65 -6.84 16 14 C 0.51 20.36 6.93 87.66 0.61 20.96 16 15 O -0.57 -26.06 15.32 -3.05 -0.05 -26.11 16 16 C 0.13 4.71 2.78 44.25 0.12 4.83 16 17 H 0.15 5.54 7.28 -2.39 -0.02 5.52 16 18 C -0.16 -3.99 8.99 71.98 0.65 -3.34 16 19 N -0.12 -4.61 3.54 -172.57 -0.61 -5.22 16 20 N -0.04 -1.66 11.99 37.02 0.44 -1.22 16 21 N -0.30 -11.56 12.23 -52.18 -0.64 -12.20 16 22 C 0.20 7.36 7.94 137.38 1.09 8.45 16 23 C -0.04 -1.15 5.88 -20.04 -0.12 -1.27 16 24 C -0.09 -2.12 9.70 22.47 0.22 -1.90 16 25 C -0.12 -1.94 10.03 22.24 0.22 -1.72 16 26 C -0.09 -1.38 10.04 22.30 0.22 -1.15 16 27 C -0.12 -2.26 10.03 22.24 0.22 -2.03 16 28 C -0.10 -2.55 9.70 22.48 0.22 -2.33 16 29 N -0.32 -12.47 11.85 -52.12 -0.62 -13.09 16 30 H 0.11 2.25 7.84 -2.91 -0.02 2.23 16 31 H 0.12 2.13 8.06 -2.91 -0.02 2.10 16 32 H 0.10 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.09 3.13 7.69 -2.39 -0.02 3.11 16 34 H 0.07 2.46 7.50 -2.39 -0.02 2.44 16 35 H 0.06 2.16 7.17 -2.39 -0.02 2.14 16 36 H 0.06 2.02 3.94 -2.39 -0.01 2.01 16 37 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.08 2.13 8.08 -2.39 -0.02 2.11 16 39 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.12 2.63 6.22 -2.39 -0.01 2.62 16 41 H 0.13 3.10 7.89 -2.91 -0.02 3.08 16 42 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 44 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 45 H 0.12 3.37 7.88 -2.91 -0.02 3.35 16 Total: -1.00 -72.78 386.92 5.84 -66.94 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.95 Total: 29.47 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 6.21 Total: 0.77 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -3.16 Total: -109.28 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.11 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 1.88 Total: 38.19 kcal Total: -72.78 5.84 -66.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292459910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.234 kcal (2) G-P(sol) polarization free energy of solvation -72.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds