Wall clock time and date at job start Wed Apr 1 2020 00:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99654 * 2 1 4 4 N 1.46502 * 109.46959 * 124.48044 * 3 2 1 5 5 C 1.46498 * 120.00469 * 271.23648 * 4 3 2 6 6 C 1.50709 * 109.46926 * 272.82538 * 5 4 3 7 7 H 1.07995 * 119.99679 * 359.97438 * 6 5 4 8 8 C 1.37873 * 119.99857 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00008 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99890 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47110 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47257 * 120.00444 * 10 8 6 13 13 H 1.48507 * 109.47063 * 239.99919 * 10 8 6 14 14 C 1.34780 * 119.99635 * 91.23509 * 4 3 2 15 15 O 1.21286 * 120.00175 * 6.57553 * 14 4 3 16 16 C 1.50699 * 119.99816 * 186.57346 * 14 4 3 17 17 H 1.08993 * 109.47283 * 35.14302 * 16 14 4 18 18 C 1.53006 * 109.47246 * 275.13882 * 16 14 4 19 19 N 1.46498 * 109.46975 * 155.14527 * 16 14 4 20 20 N 1.28735 * 125.34417 * 59.97368 * 19 16 14 21 21 N 1.28987 * 108.94404 * 179.74761 * 20 19 16 22 22 C 1.34047 * 107.26895 * 0.43093 * 21 20 19 23 23 C 1.48464 * 126.67786 * 179.83220 * 22 21 20 24 24 C 1.39302 * 120.11436 * 359.69612 * 23 22 21 25 25 C 1.38029 * 119.88288 * 179.97438 * 24 23 22 26 26 C 1.38318 * 120.11541 * 359.97001 * 25 24 23 27 27 C 1.38316 * 120.23581 * 0.28182 * 26 25 24 28 28 C 1.38030 * 120.11555 * 359.48551 * 27 26 25 29 29 N 1.28875 * 125.34423 * 240.00032 * 19 16 14 30 30 H 1.08003 * 119.99983 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.00494 * 0.02562 * 1 2 3 32 32 H 1.07997 * 120.00151 * 179.97438 * 2 1 3 33 33 H 1.09006 * 109.47118 * 4.48744 * 3 2 1 34 34 H 1.08992 * 109.47163 * 244.48338 * 3 2 1 35 35 H 1.08995 * 109.46977 * 32.82016 * 5 4 3 36 36 H 1.08993 * 109.47264 * 152.82728 * 5 4 3 37 37 H 0.97002 * 120.00151 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.47257 * 293.79050 * 18 16 14 39 39 H 1.09006 * 109.46636 * 53.79000 * 18 16 14 40 40 H 1.08999 * 109.46804 * 173.78679 * 18 16 14 41 41 H 1.08004 * 120.05870 * 359.97438 * 24 23 22 42 42 H 1.07997 * 119.94241 * 179.97438 * 25 24 23 43 43 H 1.07999 * 119.87802 * 180.02562 * 26 25 24 44 44 H 1.08001 * 119.93976 * 179.74033 * 27 26 25 45 45 H 1.08005 * 120.05679 * 180.24969 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9848 1.3371 1.1386 5 6 2.5316 1.8509 2.4335 6 6 2.7279 3.3445 2.4779 7 1 3.1485 3.8593 1.6269 8 6 2.3704 4.0535 3.6050 9 7 1.8586 3.4264 4.6416 10 14 2.6130 5.9049 3.6598 11 1 3.2009 6.3652 2.3762 12 1 1.3021 6.5699 3.8701 13 1 3.5285 6.2513 4.7766 14 6 4.2494 0.8938 0.9947 15 8 4.6611 0.5805 -0.1023 16 6 5.1519 0.7874 2.1969 17 1 4.5652 0.4918 3.0666 18 6 5.8098 2.1431 2.4623 19 7 6.1879 -0.2166 1.9424 20 7 7.0512 -0.1706 0.9885 21 7 7.8129 -1.2089 1.0626 22 6 7.3938 -1.9361 2.1078 23 6 7.9664 -3.2218 2.5803 24 6 9.0479 -3.7924 1.9130 25 6 9.5768 -4.9876 2.3567 26 6 9.0353 -5.6184 3.4622 27 6 7.9582 -5.0587 4.1253 28 6 7.4247 -3.8614 3.6928 29 7 6.3778 -1.2847 2.6380 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9352 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3577 2.1321 0.0804 34 1 2.6284 1.3985 -0.9274 35 1 1.4749 1.6192 2.5666 36 1 3.1091 1.3847 3.2317 37 1 1.6068 3.9253 5.4344 38 1 6.4829 2.3874 1.6405 39 1 5.0403 2.9109 2.5422 40 1 6.3748 2.0966 3.3932 41 1 9.4717 -3.3005 1.0500 42 1 10.4150 -5.4311 1.8398 43 1 9.4524 -6.5532 3.8063 44 1 7.5364 -5.5574 4.9855 45 1 6.5861 -3.4232 4.2138 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292459912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:21 Heat of formation + Delta-G solvation = 130.813399 kcal Electronic energy + Delta-G solvation = -29111.024371 eV Core-core repulsion = 25132.077272 eV Total energy + Delta-G solvation = -3978.947099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.44889 -41.27852 -39.99308 -37.44358 -36.74479 -35.19259 -34.64317 -34.09329 -33.04773 -31.88093 -30.93526 -29.46847 -27.72937 -26.49406 -25.51210 -25.09406 -24.10403 -22.96601 -22.54173 -21.24948 -20.38996 -18.92728 -18.66240 -18.41849 -18.20451 -17.71711 -16.94495 -16.61088 -16.47589 -16.25496 -15.83212 -15.65622 -15.06802 -14.97734 -14.60144 -14.47813 -14.32923 -14.17080 -14.09931 -13.79276 -13.61719 -13.46350 -13.29309 -13.02696 -12.85872 -12.78331 -12.63505 -12.35585 -12.31515 -12.24527 -12.22127 -12.10017 -11.88473 -11.87157 -11.66436 -11.03836 -10.60855 -10.36226 -9.90700 -9.68967 -9.63756 -8.22373 -6.35579 -0.26493 0.17258 0.45345 0.53187 1.22253 1.33284 1.37079 1.42505 1.49644 1.57440 2.14895 2.40839 2.64214 2.89017 3.06915 3.09636 3.24314 3.55456 3.57822 3.99109 4.06405 4.08841 4.11745 4.19142 4.36591 4.40192 4.45502 4.49497 4.54919 4.58796 4.65765 4.75148 4.78747 4.89237 4.96856 4.98698 5.07462 5.12614 5.19013 5.47780 5.51193 5.51743 5.56300 5.61966 5.70634 5.80425 5.98908 5.99924 6.30823 6.72230 6.94893 7.19564 7.35793 8.83718 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.002890 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.044307 B = 9687.157155 C =10518.557438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.188 4.188 3 C 0.143 3.857 4 N -0.579 5.579 5 C 0.243 3.757 6 C -0.543 4.543 7 H 0.061 0.939 8 C 0.033 3.967 9 N -0.912 5.912 10 Si 0.948 3.052 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.279 1.279 14 C 0.509 3.491 15 O -0.568 6.568 16 C 0.145 3.855 17 H 0.153 0.847 18 C -0.157 4.157 19 N -0.120 5.120 20 N -0.044 5.044 21 N -0.302 5.302 22 C 0.200 3.800 23 C -0.039 4.039 24 C -0.091 4.091 25 C -0.119 4.119 26 C -0.095 4.095 27 C -0.121 4.121 28 C -0.095 4.095 29 N -0.314 5.314 30 H 0.117 0.883 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.037 0.963 37 H 0.269 0.731 38 H 0.071 0.929 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.129 0.871 42 H 0.158 0.842 43 H 0.162 0.838 44 H 0.156 0.844 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.767 -13.846 0.183 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.207 4.207 3 C 0.021 3.979 4 N -0.308 5.308 5 C 0.123 3.877 6 C -0.581 4.581 7 H 0.079 0.921 8 C -0.169 4.169 9 N -0.550 5.550 10 Si 0.774 3.226 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.204 1.204 14 C 0.294 3.706 15 O -0.448 6.448 16 C 0.042 3.958 17 H 0.171 0.829 18 C -0.216 4.216 19 N -0.033 5.033 20 N -0.037 5.037 21 N -0.173 5.173 22 C -0.079 4.079 23 C -0.042 4.042 24 C -0.111 4.111 25 C -0.137 4.137 26 C -0.113 4.113 27 C -0.139 4.139 28 C -0.115 4.115 29 N -0.164 5.164 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.147 0.853 42 H 0.176 0.824 43 H 0.180 0.820 44 H 0.173 0.827 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.742 -13.321 -0.592 15.418 hybrid contribution -0.302 0.986 0.383 1.100 sum 7.440 -12.334 -0.209 14.406 Atomic orbital electron populations 1.24058 0.94826 1.03314 0.97202 1.23126 0.96909 0.97689 1.02956 1.20586 0.91987 0.96408 0.88920 1.48143 1.09214 1.59301 1.14159 1.19372 0.96134 0.93788 0.78392 1.21561 1.43041 0.92553 1.00992 0.92080 1.25509 0.94255 1.02104 0.95023 1.69992 1.42108 1.37573 1.05360 0.85643 0.77860 0.80766 0.78287 1.19332 1.20862 1.20419 1.20134 0.83075 0.78272 0.89145 1.90718 1.74726 1.52073 1.27236 1.21978 0.85640 0.88475 0.99711 0.82944 1.22285 1.03251 0.92369 1.03663 1.49966 1.22469 1.15019 1.15825 1.78991 0.98466 1.17076 1.09196 1.75986 1.21464 1.01320 1.18537 1.24256 0.92681 0.98523 0.92422 1.17516 0.98749 0.89141 0.98786 1.21331 0.94118 0.96381 0.99293 1.21455 1.00835 0.94034 0.97367 1.21776 0.94838 1.00474 0.94249 1.21443 0.96905 0.94441 1.01072 1.21335 0.99604 0.95993 0.94572 1.74831 1.20228 0.98618 1.22706 0.86459 0.87251 0.89004 0.88748 0.90441 0.95114 0.94571 0.92179 0.90984 0.86242 0.89217 0.85304 0.82403 0.82022 0.82652 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 14.32 67.78 0.97 -3.05 16 2 C -0.19 -5.90 9.85 25.65 0.25 -5.64 16 3 C 0.14 5.04 5.92 85.63 0.51 5.55 16 4 N -0.58 -22.89 2.44 -830.49 -2.03 -24.92 16 5 C 0.24 10.40 4.88 85.64 0.42 10.82 16 6 C -0.54 -24.94 7.20 25.60 0.18 -24.76 16 7 H 0.06 2.86 7.81 -2.91 -0.02 2.83 16 8 C 0.03 1.56 5.46 84.65 0.46 2.02 16 9 N -0.91 -45.76 13.29 21.45 0.28 -45.47 16 10 Si 0.95 38.38 29.54 68.60 2.03 40.41 16 11 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 12 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 13 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 14 C 0.51 20.93 6.87 87.66 0.60 21.53 16 15 O -0.57 -26.25 15.28 -3.05 -0.05 -26.29 16 16 C 0.15 5.42 2.86 44.25 0.13 5.55 16 17 H 0.15 5.45 6.27 -2.39 -0.01 5.44 16 18 C -0.16 -5.40 9.33 71.98 0.67 -4.73 16 19 N -0.12 -4.71 3.62 -172.58 -0.63 -5.34 16 20 N -0.04 -1.84 11.89 37.02 0.44 -1.40 16 21 N -0.30 -11.76 12.23 -52.18 -0.64 -12.40 16 22 C 0.20 7.12 7.94 137.38 1.09 8.21 16 23 C -0.04 -1.08 5.88 -20.04 -0.12 -1.20 16 24 C -0.09 -2.08 9.70 22.48 0.22 -1.86 16 25 C -0.12 -1.84 10.03 22.24 0.22 -1.62 16 26 C -0.09 -1.23 10.04 22.31 0.22 -1.01 16 27 C -0.12 -1.93 10.03 22.24 0.22 -1.71 16 28 C -0.09 -2.20 9.70 22.47 0.22 -1.99 16 29 N -0.31 -11.74 11.85 -52.13 -0.62 -12.36 16 30 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.11 2.62 7.84 -2.91 -0.02 2.59 16 32 H 0.09 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.09 3.18 7.73 -2.38 -0.02 3.16 16 34 H 0.08 2.83 7.31 -2.39 -0.02 2.81 16 35 H 0.03 1.40 8.09 -2.39 -0.02 1.38 16 36 H 0.04 1.58 5.72 -2.39 -0.01 1.56 16 37 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 38 H 0.07 2.48 8.04 -2.39 -0.02 2.46 16 39 H 0.12 4.44 5.51 -2.38 -0.01 4.42 16 40 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.13 3.00 7.89 -2.91 -0.02 2.98 16 42 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 44 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.13 3.01 7.88 -2.91 -0.02 2.99 16 Total: -1.00 -62.09 388.30 6.08 -56.01 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 1.01 Total: 25.65 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 6.27 Total: 6.12 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.18 Total: -101.89 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.05 Total: -26.29 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -62.09 6.08 -56.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292459912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.823 kcal (2) G-P(sol) polarization free energy of solvation -62.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds