Wall clock time and date at job start Wed Apr 1 2020 00:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46971 * 2 1 4 4 C 1.50699 * 109.47299 * 240.00204 * 2 1 3 5 5 H 1.07998 * 120.00015 * 240.00173 * 4 2 1 6 6 C 1.37877 * 119.99939 * 59.99722 * 4 2 1 7 7 N 1.31513 * 119.99932 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99971 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47187 * 90.00268 * 8 6 4 10 10 H 1.48498 * 109.47066 * 210.00079 * 8 6 4 11 11 H 1.48503 * 109.47059 * 330.00640 * 8 6 4 12 12 N 1.46504 * 109.47080 * 120.00337 * 2 1 3 13 13 C 1.46498 * 120.00241 * 59.99664 * 12 2 1 14 14 S 1.65597 * 119.99626 * 240.00279 * 12 2 1 15 15 O 1.42102 * 106.40533 * 336.45901 * 14 12 2 16 16 O 1.42103 * 106.40130 * 203.53524 * 14 12 2 17 17 N 1.65595 * 107.22109 * 90.00019 * 14 12 2 18 18 C 1.46504 * 120.00178 * 64.99561 * 17 14 12 19 19 C 1.53005 * 109.47067 * 165.00231 * 18 17 14 20 20 C 1.53000 * 109.47189 * 59.99997 * 19 18 17 21 21 C 1.52997 * 109.47004 * 299.99799 * 19 18 17 22 22 C 1.50706 * 109.46887 * 180.02562 * 19 18 17 23 23 C 1.38227 * 119.61686 * 165.02650 * 22 19 18 24 24 C 1.38627 * 119.15663 * 179.70253 * 23 22 19 25 25 C 1.38669 * 118.42388 * 0.51169 * 24 23 22 26 26 C 1.38186 * 119.16143 * 359.50231 * 25 24 23 27 27 N 1.31856 * 119.61480 * 344.99568 * 22 19 18 28 28 H 1.08994 * 109.47013 * 59.99868 * 1 2 3 29 29 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47221 * 299.99777 * 1 2 3 31 31 H 0.97003 * 120.00002 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47315 * 270.00375 * 13 12 2 33 33 H 1.09001 * 109.46706 * 30.00346 * 13 12 2 34 34 H 1.09003 * 109.47364 * 149.99829 * 13 12 2 35 35 H 0.97007 * 120.00080 * 244.99909 * 17 14 12 36 36 H 1.09000 * 109.47122 * 45.00629 * 18 17 14 37 37 H 1.09000 * 109.46915 * 285.00067 * 18 17 14 38 38 H 1.08992 * 109.47284 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47466 * 299.99975 * 20 19 18 40 40 H 1.09010 * 109.46811 * 59.99959 * 20 19 18 41 41 H 1.09000 * 109.47670 * 299.99899 * 21 19 18 42 42 H 1.08998 * 109.46868 * 60.00505 * 21 19 18 43 43 H 1.09001 * 109.46819 * 180.02562 * 21 19 18 44 44 H 1.07998 * 120.41947 * 359.94797 * 23 22 19 45 45 H 1.08008 * 120.78691 * 180.26734 * 24 23 22 46 46 H 1.08002 * 120.42244 * 179.78749 * 25 24 23 47 47 H 1.07996 * 119.61757 * 180.25243 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3226 -1.1194 -4.0080 9 1 1.3450 -2.1614 -4.4125 10 1 2.4873 -0.1400 -5.1120 11 1 3.6310 -1.7565 -3.7119 12 7 2.0184 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.5794 1.1830 1.5749 16 8 3.7118 -0.8790 2.9815 17 7 1.9607 0.8089 3.3998 18 6 1.1509 -0.0354 4.2817 19 6 0.6086 0.8074 5.4378 20 6 -0.2560 1.9403 4.8813 21 6 1.7766 1.3988 6.2294 22 6 -0.2239 -0.0613 6.3453 23 6 -0.5583 0.3925 7.6074 24 6 -1.3297 -0.4118 8.4319 25 6 -1.7287 -1.6525 7.9582 26 6 -1.3555 -2.0389 6.6850 27 7 -0.6253 -1.2452 5.9259 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.7095 1.1619 -3.4844 32 1 0.7375 -2.1445 1.9993 33 1 1.5295 -2.5969 0.4708 34 1 2.4629 -2.5820 1.9863 35 1 1.9054 1.7750 3.4682 36 1 1.7669 -0.8425 4.6782 37 1 0.3188 -0.4568 3.7177 38 1 -0.6427 2.5404 5.7049 39 1 0.3464 2.5685 4.2252 40 1 -1.0882 1.5188 4.3173 41 1 2.3926 0.5917 6.6260 42 1 2.3790 2.0270 5.5733 43 1 1.3902 1.9989 7.0533 44 1 -0.2262 1.3630 7.9453 45 1 -1.6099 -0.0815 9.4214 46 1 -2.3274 -2.3066 8.5747 47 1 -1.6656 -3.0019 6.3071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295329056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:14 Heat of formation + Delta-G solvation = -43.991036 kcal Electronic energy + Delta-G solvation = -29024.226767 eV Core-core repulsion = 25140.850779 eV Total energy + Delta-G solvation = -3883.375988 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.72277 -37.56297 -36.53702 -36.05425 -35.13373 -33.20876 -32.71028 -32.51207 -30.15873 -29.02298 -27.44826 -26.23490 -25.39349 -25.10953 -23.72120 -23.31945 -20.74037 -19.76567 -18.82239 -17.46181 -16.93318 -16.80752 -16.55664 -16.10932 -15.50625 -15.43318 -15.01184 -14.80711 -14.29821 -14.22991 -13.82160 -13.55277 -13.35060 -13.32629 -13.07023 -12.67435 -12.47872 -12.38726 -11.99293 -11.94222 -11.73378 -11.67135 -11.41011 -11.27628 -11.25597 -11.20484 -11.15825 -10.87753 -10.84872 -10.75070 -10.39209 -10.16236 -10.10404 -10.00258 -9.59362 -9.21406 -9.18778 -9.09531 -8.40912 -7.88575 -6.02857 -4.08948 0.88008 1.06151 1.32989 3.31383 3.38196 3.42666 3.57119 3.60268 3.96041 4.21710 4.37067 4.44349 4.60820 4.71479 4.80974 4.84984 4.93276 4.94261 5.12630 5.28851 5.35865 5.43772 5.48303 5.57374 5.65000 5.68404 5.77205 5.81364 5.89937 5.91266 6.00734 6.04992 6.16613 6.24913 6.26365 6.45632 6.49400 6.75165 6.86973 6.92351 7.11087 7.25768 7.57647 7.69857 7.81878 7.85684 8.11128 8.33616 8.93139 9.56367 11.02837 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018154 B = 0.003163 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.985533 B = 8849.479381 C = 9293.385575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.988 5.988 13 C 0.096 3.904 14 S 2.781 3.219 15 O -0.977 6.977 16 O -0.998 6.998 17 N -1.135 6.135 18 C 0.145 3.855 19 C -0.022 4.022 20 C -0.138 4.138 21 C -0.142 4.142 22 C 0.148 3.852 23 C -0.168 4.168 24 C -0.075 4.075 25 C -0.182 4.182 26 C 0.104 3.896 27 N -0.476 5.476 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.010 0.990 31 H 0.262 0.738 32 H 0.039 0.961 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.409 0.591 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.893 -0.613 22.103 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.831 5.831 13 C -0.050 4.050 14 S 2.789 3.211 15 O -0.961 6.961 16 O -0.981 6.981 17 N -0.895 5.895 18 C 0.018 3.982 19 C -0.024 4.024 20 C -0.196 4.196 21 C -0.200 4.200 22 C 0.009 3.991 23 C -0.187 4.187 24 C -0.101 4.101 25 C -0.202 4.202 26 C -0.053 4.053 27 N -0.184 5.184 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.243 0.757 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.152 0.848 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.762 -0.939 21.109 21.902 hybrid contribution -0.608 0.139 0.101 0.632 sum -6.370 -0.800 21.210 22.160 Atomic orbital electron populations 1.22092 0.98242 0.99718 1.00451 1.18700 0.91273 0.92953 0.80457 0.92448 1.21357 1.31446 1.12961 0.90118 0.91928 1.24903 0.95012 0.95015 0.98964 1.69865 1.36682 1.22693 1.23684 0.86507 0.79289 0.79279 0.82391 1.20690 1.21168 1.19841 1.57613 1.69871 1.19875 1.35704 1.21318 0.98851 0.82352 1.02528 1.01847 0.73639 0.73131 0.72437 1.93608 1.74512 1.56038 1.71959 1.93519 1.69352 1.60772 1.74492 1.56284 1.62710 1.17220 1.53247 1.21042 0.95064 0.91943 0.90122 1.19678 0.94423 0.94354 0.93932 1.21883 0.99804 0.96901 1.01047 1.21952 0.97020 1.01235 0.99796 1.21075 0.94467 0.91296 0.92265 1.21909 1.00270 1.01524 0.95043 1.21561 0.95162 0.93771 0.99619 1.22138 1.02467 0.97629 0.97935 1.22811 0.93087 0.98762 0.90598 1.67530 1.10444 1.04146 1.36322 0.89096 0.94890 0.97056 0.92770 0.94272 0.89994 0.92025 0.75744 0.90571 0.90560 0.92296 0.91222 0.91766 0.92015 0.91181 0.92162 0.84769 0.84997 0.84955 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.97 37.16 0.33 -3.03 16 2 C 0.27 6.68 2.62 -69.08 -0.18 6.50 16 3 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 4 C -0.52 -14.17 7.99 -34.44 -0.28 -14.44 16 5 H 0.06 1.70 7.33 -52.49 -0.38 1.31 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 12 N -0.99 -21.00 3.12 -115.85 -0.36 -21.37 16 13 C 0.10 1.78 9.66 59.85 0.58 2.36 16 14 S 2.78 55.79 6.14 -107.50 -0.66 55.13 16 15 O -0.98 -23.08 16.70 -57.17 -0.95 -24.04 16 16 O -1.00 -21.28 16.21 -57.17 -0.93 -22.21 16 17 N -1.13 -17.23 5.39 -10.61 -0.06 -17.28 16 18 C 0.14 2.00 4.47 -4.04 -0.02 1.98 16 19 C -0.02 -0.24 0.64 -155.66 -0.10 -0.33 16 20 C -0.14 -1.38 8.24 37.16 0.31 -1.08 16 21 C -0.14 -1.35 7.92 37.16 0.29 -1.06 16 22 C 0.15 1.61 5.56 -82.58 -0.46 1.15 16 23 C -0.17 -1.44 9.08 -39.44 -0.36 -1.80 16 24 C -0.08 -0.56 10.18 -39.28 -0.40 -0.96 16 25 C -0.18 -1.37 10.11 -39.44 -0.40 -1.77 16 26 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 27 N -0.48 -5.70 9.03 -9.47 -0.09 -5.79 16 28 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 29 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.58 7.02 -51.93 -0.36 1.22 16 34 H 0.06 1.09 7.02 -51.93 -0.36 0.72 16 35 H 0.41 5.38 6.47 -34.47 -0.22 5.16 16 36 H 0.08 1.13 7.75 -51.93 -0.40 0.72 16 37 H 0.08 1.11 7.85 -51.93 -0.41 0.71 16 38 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 39 H 0.07 0.68 6.60 -51.93 -0.34 0.33 16 40 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.66 7.19 -51.93 -0.37 0.29 16 43 H 0.06 0.44 6.70 -51.93 -0.35 0.09 16 44 H 0.13 0.89 6.73 -52.49 -0.35 0.53 16 45 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 46 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 47 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -33.71 385.14 -9.76 -43.46 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.15 Total: 4.37 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -0.97 Total: -10.04 kcal Atomic # 7 Polarization: -68.96 SS G_CDS: 0.12 Total: -68.84 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -1.88 Total: -46.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 55.79 SS G_CDS: -0.66 Total: 55.13 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.71 -9.76 -43.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295329056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.527 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds