Wall clock time and date at job start Wed Apr 1 2020 00:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46971 * 2 1 4 4 C 1.50699 * 109.47299 * 240.00204 * 2 1 3 5 5 H 1.07998 * 120.00015 * 240.00173 * 4 2 1 6 6 C 1.37877 * 119.99939 * 59.99722 * 4 2 1 7 7 N 1.31513 * 119.99932 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99971 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47187 * 90.00268 * 8 6 4 10 10 H 1.48498 * 109.47066 * 210.00079 * 8 6 4 11 11 H 1.48503 * 109.47059 * 330.00640 * 8 6 4 12 12 N 1.46504 * 109.47080 * 120.00337 * 2 1 3 13 13 C 1.46498 * 120.00241 * 59.99664 * 12 2 1 14 14 S 1.65597 * 119.99626 * 240.00279 * 12 2 1 15 15 O 1.42102 * 106.40533 * 336.45901 * 14 12 2 16 16 O 1.42103 * 106.40130 * 203.53524 * 14 12 2 17 17 N 1.65595 * 107.22109 * 90.00019 * 14 12 2 18 18 C 1.46504 * 120.00178 * 64.99561 * 17 14 12 19 19 C 1.53005 * 109.47067 * 165.00231 * 18 17 14 20 20 C 1.53000 * 109.47189 * 59.99997 * 19 18 17 21 21 C 1.52997 * 109.47004 * 299.99799 * 19 18 17 22 22 C 1.50706 * 109.46887 * 180.02562 * 19 18 17 23 23 C 1.38227 * 119.61686 * 165.02650 * 22 19 18 24 24 C 1.38627 * 119.15663 * 179.70253 * 23 22 19 25 25 C 1.38669 * 118.42388 * 0.51169 * 24 23 22 26 26 C 1.38186 * 119.16143 * 359.50231 * 25 24 23 27 27 N 1.31856 * 119.61480 * 344.99568 * 22 19 18 28 28 H 1.08994 * 109.47013 * 59.99868 * 1 2 3 29 29 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47221 * 299.99777 * 1 2 3 31 31 H 0.97003 * 120.00002 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47315 * 270.00375 * 13 12 2 33 33 H 1.09001 * 109.46706 * 30.00346 * 13 12 2 34 34 H 1.09003 * 109.47364 * 149.99829 * 13 12 2 35 35 H 0.97007 * 120.00080 * 244.99909 * 17 14 12 36 36 H 1.09000 * 109.47122 * 45.00629 * 18 17 14 37 37 H 1.09000 * 109.46915 * 285.00067 * 18 17 14 38 38 H 1.08992 * 109.47284 * 179.97438 * 20 19 18 39 39 H 1.08998 * 109.47466 * 299.99975 * 20 19 18 40 40 H 1.09010 * 109.46811 * 59.99959 * 20 19 18 41 41 H 1.09000 * 109.47670 * 299.99899 * 21 19 18 42 42 H 1.08998 * 109.46868 * 60.00505 * 21 19 18 43 43 H 1.09001 * 109.46819 * 180.02562 * 21 19 18 44 44 H 1.07998 * 120.41947 * 359.94797 * 23 22 19 45 45 H 1.08008 * 120.78691 * 180.26734 * 24 23 22 46 46 H 1.08002 * 120.42244 * 179.78749 * 25 24 23 47 47 H 1.07996 * 119.61757 * 180.25243 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6033 8 14 2.3226 -1.1194 -4.0080 9 1 1.3450 -2.1614 -4.4125 10 1 2.4873 -0.1400 -5.1120 11 1 3.6310 -1.7565 -3.7119 12 7 2.0184 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 3.5794 1.1830 1.5749 16 8 3.7118 -0.8790 2.9815 17 7 1.9607 0.8089 3.3998 18 6 1.1509 -0.0354 4.2817 19 6 0.6086 0.8074 5.4378 20 6 -0.2560 1.9403 4.8813 21 6 1.7766 1.3988 6.2294 22 6 -0.2239 -0.0613 6.3453 23 6 -0.5583 0.3925 7.6074 24 6 -1.3297 -0.4118 8.4319 25 6 -1.7287 -1.6525 7.9582 26 6 -1.3555 -2.0389 6.6850 27 7 -0.6253 -1.2452 5.9259 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.7095 1.1619 -3.4844 32 1 0.7375 -2.1445 1.9993 33 1 1.5295 -2.5969 0.4708 34 1 2.4629 -2.5820 1.9863 35 1 1.9054 1.7750 3.4682 36 1 1.7669 -0.8425 4.6782 37 1 0.3188 -0.4568 3.7177 38 1 -0.6427 2.5404 5.7049 39 1 0.3464 2.5685 4.2252 40 1 -1.0882 1.5188 4.3173 41 1 2.3926 0.5917 6.6260 42 1 2.3790 2.0270 5.5733 43 1 1.3902 1.9989 7.0533 44 1 -0.2262 1.3630 7.9453 45 1 -1.6099 -0.0815 9.4214 46 1 -2.3274 -2.3066 8.5747 47 1 -1.6656 -3.0019 6.3071 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295329056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:13 Heat of formation + Delta-G solvation = -67.332777 kcal Electronic energy + Delta-G solvation = -29025.238941 eV Core-core repulsion = 25140.850779 eV Total energy + Delta-G solvation = -3884.388161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.41406 -38.54247 -38.22011 -37.85549 -36.88264 -34.52288 -34.29526 -33.34268 -30.91237 -30.86256 -28.20347 -27.28959 -27.22981 -26.94203 -24.41790 -24.02490 -22.61291 -20.59693 -20.35010 -18.96687 -18.58837 -18.20051 -17.64880 -17.28370 -17.02726 -16.51480 -16.15758 -15.93187 -15.70660 -15.16423 -15.05832 -14.81666 -14.67890 -14.40372 -14.32949 -13.89980 -13.77969 -13.46282 -13.38297 -13.18940 -13.16760 -13.10789 -13.00516 -12.94164 -12.72864 -12.69325 -12.61504 -12.24745 -12.12525 -12.09677 -12.04127 -11.89548 -11.76399 -11.16145 -10.73620 -10.52487 -10.47562 -10.19339 -9.82436 -9.64705 -8.11020 -6.24347 -0.29378 0.24728 0.45976 1.42501 1.44328 1.54129 2.04937 2.43973 2.63893 2.92188 3.17163 3.25122 3.40782 3.70021 3.90851 3.96716 4.12572 4.15959 4.17653 4.30772 4.35036 4.47390 4.68325 4.71051 4.76045 4.77384 4.81113 4.83979 4.89180 4.96012 5.00814 5.02371 5.08968 5.12081 5.17344 5.25701 5.26249 5.32495 5.37680 5.40528 5.61692 5.70301 5.86956 5.88573 6.07449 6.22101 6.31040 6.82979 7.15241 7.44192 8.93343 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018154 B = 0.003163 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.985533 B = 8849.479381 C = 9293.385575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.275 3.725 3 H 0.026 0.974 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.956 3.044 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.275 1.275 12 N -0.996 5.996 13 C 0.094 3.906 14 S 2.797 3.203 15 O -1.016 7.016 16 O -1.011 7.011 17 N -1.117 6.117 18 C 0.145 3.855 19 C -0.016 4.016 20 C -0.137 4.137 21 C -0.143 4.143 22 C 0.124 3.876 23 C -0.168 4.168 24 C -0.076 4.076 25 C -0.176 4.176 26 C 0.083 3.917 27 N -0.513 5.513 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.264 0.736 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.420 0.580 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.155 0.845 45 H 0.164 0.836 46 H 0.160 0.840 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.004 -0.791 24.243 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.171 3.829 3 H 0.044 0.956 4 C -0.579 4.579 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.200 1.200 12 N -0.838 5.838 13 C -0.051 4.051 14 S 2.806 3.194 15 O -1.000 7.000 16 O -0.994 6.994 17 N -0.881 5.881 18 C 0.019 3.981 19 C -0.019 4.019 20 C -0.195 4.195 21 C -0.200 4.200 22 C -0.014 4.014 23 C -0.188 4.188 24 C -0.102 4.102 25 C -0.196 4.196 26 C -0.074 4.074 27 N -0.223 5.223 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.257 0.743 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.173 0.827 45 H 0.181 0.819 46 H 0.178 0.822 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.875 -1.128 23.256 24.277 hybrid contribution -0.298 0.165 -0.438 0.555 sum -7.173 -0.962 22.818 23.938 Atomic orbital electron populations 1.21881 0.96931 1.00013 1.00284 1.18381 0.92127 0.91354 0.81072 0.95638 1.21666 1.31667 1.13081 0.91523 0.92502 1.25638 0.95214 0.95717 1.01642 1.69978 1.37317 1.23621 1.24342 0.85589 0.78771 0.78433 0.79026 1.19475 1.20841 1.19977 1.57511 1.69906 1.21018 1.35326 1.21442 1.00313 0.80881 1.02502 1.01149 0.73600 0.72347 0.72337 1.93551 1.75912 1.57258 1.73272 1.93496 1.70073 1.61329 1.74551 1.55811 1.62197 1.17966 1.52104 1.21120 0.94121 0.92081 0.90802 1.19635 0.95055 0.94240 0.92965 1.21885 0.99145 0.96747 1.01720 1.21979 0.96401 1.01171 1.00476 1.21107 0.95556 0.91422 0.93342 1.22141 1.00014 1.02532 0.94121 1.21986 0.94143 0.93347 1.00688 1.22467 1.01730 0.98122 0.97279 1.23152 0.93366 0.99221 0.91614 1.67441 1.11817 1.05139 1.37865 0.91505 0.94239 0.94865 0.92627 0.91871 0.90892 0.91238 0.74344 0.91741 0.91416 0.89959 0.91306 0.93241 0.92938 0.91459 0.89355 0.82696 0.81893 0.82217 0.81487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.97 71.98 0.65 -5.46 16 2 C 0.27 13.92 2.62 44.25 0.12 14.03 16 3 H 0.03 1.46 6.91 -2.39 -0.02 1.44 16 4 C -0.54 -29.93 7.99 25.60 0.20 -29.72 16 5 H 0.06 3.13 7.33 -2.91 -0.02 3.11 16 6 C 0.02 0.98 5.30 84.65 0.45 1.43 16 7 N -0.91 -52.02 11.32 21.45 0.24 -51.77 16 8 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 N -1.00 -42.84 3.12 -520.43 -1.62 -44.46 16 13 C 0.09 3.49 9.66 127.77 1.23 4.72 16 14 S 2.80 113.89 6.14 -56.49 -0.35 113.54 16 15 O -1.02 -49.28 16.70 -128.00 -2.14 -51.42 16 16 O -1.01 -43.40 16.21 -128.00 -2.07 -45.48 16 17 N -1.12 -33.88 5.39 -187.47 -1.01 -34.89 16 18 C 0.14 3.97 4.47 86.38 0.39 4.35 16 19 C -0.02 -0.34 0.64 -52.93 -0.03 -0.37 16 20 C -0.14 -2.54 8.24 71.98 0.59 -1.95 16 21 C -0.14 -2.47 7.92 71.98 0.57 -1.90 16 22 C 0.12 2.53 5.56 42.55 0.24 2.77 16 23 C -0.17 -2.44 9.08 22.36 0.20 -2.24 16 24 C -0.08 -0.87 10.18 22.47 0.23 -0.64 16 25 C -0.18 -2.20 10.11 22.36 0.23 -1.97 16 26 C 0.08 1.47 11.18 84.67 0.95 2.42 16 27 N -0.51 -11.98 9.03 -183.88 -1.66 -13.64 16 28 H 0.07 3.45 6.07 -2.39 -0.01 3.44 16 29 H 0.04 1.73 7.67 -2.39 -0.02 1.71 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 2.82 7.02 -2.39 -0.02 2.80 16 34 H 0.07 2.44 7.02 -2.39 -0.02 2.42 16 35 H 0.42 10.96 6.47 -96.74 -0.63 10.34 16 36 H 0.06 1.92 7.75 -2.39 -0.02 1.90 16 37 H 0.07 1.98 7.85 -2.39 -0.02 1.96 16 38 H 0.08 1.12 8.09 -2.39 -0.02 1.11 16 39 H 0.07 1.25 6.60 -2.39 -0.02 1.24 16 40 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.18 7.19 -2.39 -0.02 1.16 16 43 H 0.09 1.01 6.70 -2.39 -0.02 0.99 16 44 H 0.16 1.47 6.73 -2.91 -0.02 1.45 16 45 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 46 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 47 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -73.54 385.14 -0.23 -73.77 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.35 Total: 22.85 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 6.00 Total: -14.53 kcal Atomic # 7 Polarization: -140.71 SS G_CDS: -4.05 Total: -144.76 kcal Atomic # 8 Polarization: -92.68 SS G_CDS: -4.21 Total: -96.90 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 113.89 SS G_CDS: -0.35 Total: 113.54 kcal Total: -73.54 -0.23 -73.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295329056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.435 kcal (2) G-P(sol) polarization free energy of solvation -73.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds