Wall clock time and date at job start Wed Apr 1 2020 00:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46950 * 2 1 4 4 C 1.36931 * 120.00399 * 86.24169 * 3 2 1 5 5 H 1.08002 * 120.00181 * 221.58320 * 4 3 2 6 6 C 1.38817 * 120.00300 * 41.57936 * 4 3 2 7 7 N 1.31625 * 119.99303 * 20.37837 * 6 4 3 8 8 Si 1.86793 * 120.00544 * 200.38129 * 6 4 3 9 9 H 1.48499 * 109.47141 * 59.99553 * 8 6 4 10 10 H 1.48501 * 109.47222 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47184 * 299.99760 * 8 6 4 12 12 C 1.46500 * 119.99829 * 266.24104 * 3 2 1 13 13 C 1.50701 * 109.47174 * 95.27404 * 12 3 2 14 14 N 1.30438 * 126.42445 * 270.33921 * 13 12 3 15 15 N 1.28529 * 110.10794 * 179.85736 * 14 13 12 16 16 C 1.31478 * 109.89814 * 0.41515 * 15 14 13 17 17 N 1.36474 * 106.77818 * 359.75408 * 16 15 14 18 18 C 1.38909 * 120.92753 * 179.97438 * 17 16 15 19 19 C 1.38656 * 121.31636 * 180.02562 * 18 17 16 20 20 C 1.38063 * 119.88153 * 179.97438 * 19 18 17 21 21 C 1.38614 * 120.59595 * 0.02562 * 20 19 18 22 22 C 1.37896 * 120.34221 * 0.02562 * 21 20 19 23 23 C 1.39353 * 119.60975 * 359.97438 * 22 21 20 24 24 C 1.47422 * 121.32558 * 180.02562 * 23 22 21 25 25 O 1.21638 * 120.57592 * 359.97438 * 24 23 22 26 26 N 1.34937 * 118.85328 * 179.97438 * 24 23 22 27 27 C 1.46497 * 119.51533 * 179.97438 * 26 24 23 28 28 C 1.52999 * 109.47249 * 89.99839 * 27 26 24 29 29 H 1.09000 * 109.46845 * 60.00522 * 1 2 3 30 30 H 1.09003 * 109.46830 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47406 * 299.99980 * 1 2 3 32 32 H 1.09000 * 109.47140 * 239.99696 * 2 1 3 33 33 H 1.09006 * 109.47231 * 119.99592 * 2 1 3 34 34 H 0.97001 * 120.00001 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47236 * 215.27288 * 12 3 2 36 36 H 1.09004 * 109.47419 * 335.27363 * 12 3 2 37 37 H 1.08003 * 120.06278 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.70683 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.83013 * 179.97438 * 21 20 19 40 40 H 1.08007 * 120.19557 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.47430 * 210.00542 * 27 26 24 42 42 H 1.09006 * 109.46667 * 329.99896 * 27 26 24 43 43 H 1.08999 * 109.46942 * 299.99915 * 28 27 26 44 44 H 1.08996 * 109.46957 * 60.00862 * 28 27 26 45 45 H 1.09005 * 109.46574 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1732 2.0527 1.1833 5 1 1.8739 3.0876 1.2601 6 6 2.7150 1.4034 2.2841 7 7 3.4365 0.3153 2.1169 8 14 2.4201 2.0736 4.0025 9 1 0.9617 2.0965 4.2814 10 1 3.1000 1.2045 4.9963 11 1 2.9636 3.4524 4.0961 12 6 2.3408 2.0441 -1.2660 13 6 1.1541 2.8500 -1.7277 14 7 0.1808 2.4297 -2.4877 15 7 -0.6671 3.3755 -2.6834 16 6 -0.2741 4.4647 -2.0606 17 7 0.8990 4.1587 -1.4339 18 6 1.5761 5.1103 -0.6819 19 6 2.7687 4.8083 -0.0423 20 6 3.4172 5.7772 0.6971 21 6 2.8869 7.0531 0.8077 22 6 1.7014 7.3715 0.1795 23 6 1.0372 6.4023 -0.5698 24 6 -0.2320 6.7017 -1.2575 25 8 -0.7293 7.8093 -1.1838 26 7 -0.8325 5.7258 -1.9700 27 6 -2.0945 6.0072 -2.6587 28 6 -1.8021 6.5125 -4.0729 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.8155 -0.1383 2.8860 35 1 3.1954 2.7053 -1.1225 36 1 2.5847 1.2931 -2.0176 37 1 3.1896 3.8168 -0.1223 38 1 4.3461 5.5390 1.1938 39 1 3.4044 7.8014 1.3897 40 1 1.2900 8.3663 0.2676 41 1 -2.6893 5.0956 -2.7143 42 1 -2.6470 6.7685 -2.1079 43 1 -1.2073 7.4242 -4.0173 44 1 -1.2496 5.7512 -4.6237 45 1 -2.7411 6.7223 -4.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298037007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:04 Heat of formation + Delta-G solvation = 117.844993 kcal Electronic energy + Delta-G solvation = -31170.647623 eV Core-core repulsion = 27191.138172 eV Total energy + Delta-G solvation = -3979.509451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.30208 -40.49816 -38.83709 -36.52146 -36.13221 -34.87671 -32.41056 -31.74678 -30.72073 -30.34251 -29.87377 -28.88826 -26.24994 -25.04446 -24.21569 -23.22525 -23.06884 -22.37106 -20.87789 -20.22526 -19.38640 -18.88478 -17.18885 -16.91944 -16.80927 -16.28891 -15.82011 -15.19955 -14.87469 -14.74042 -14.32091 -14.23398 -14.11436 -13.87942 -13.74370 -13.54544 -13.39224 -12.73279 -12.46120 -12.29602 -12.25718 -11.95968 -11.56443 -11.47026 -11.36801 -11.27028 -11.19420 -11.03952 -10.98946 -10.74739 -10.64994 -10.60096 -10.25444 -10.13548 -9.81208 -9.66632 -9.15261 -8.74901 -8.49651 -8.10515 -6.83765 -6.03582 -3.70507 0.54392 0.95294 1.93303 2.02846 2.61489 2.66702 3.15626 3.19822 3.28005 3.32482 3.76324 4.01233 4.26097 4.29338 4.68774 4.77616 4.92295 4.95006 5.03286 5.05173 5.13016 5.16618 5.27765 5.30914 5.36621 5.49475 5.61719 5.68328 5.80516 5.83635 6.04045 6.05731 6.21758 6.24585 6.30702 6.32397 6.37741 6.42945 6.57157 6.67575 6.70204 6.76291 6.91773 7.19915 7.21429 7.55813 7.63126 7.64789 8.27771 8.90707 8.93958 9.50358 10.10608 10.94934 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.005267 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.451076 B = 5315.117734 C = 6856.764350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 N -0.563 5.563 4 C -0.286 4.286 5 H 0.060 0.940 6 C 0.034 3.966 7 N -0.872 5.872 8 Si 0.891 3.109 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.210 3.790 13 C 0.211 3.789 14 N -0.271 5.271 15 N -0.297 5.297 16 C 0.383 3.617 17 N -0.429 5.429 18 C 0.177 3.823 19 C -0.124 4.124 20 C -0.059 4.059 21 C -0.137 4.137 22 C -0.038 4.038 23 C -0.170 4.170 24 C 0.569 3.431 25 O -0.511 6.511 26 N -0.505 5.505 27 C 0.111 3.889 28 C -0.165 4.165 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.088 0.912 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.175 0.825 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.197 10.860 -5.872 12.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.019 3.981 3 N -0.281 5.281 4 C -0.415 4.415 5 H 0.077 0.923 6 C -0.170 4.170 7 N -0.511 5.511 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.079 3.921 13 C -0.058 4.058 14 N -0.108 5.108 15 N -0.143 5.143 16 C 0.030 3.970 17 N -0.120 5.120 18 C 0.080 3.920 19 C -0.143 4.143 20 C -0.078 4.078 21 C -0.156 4.156 22 C -0.057 4.057 23 C -0.175 4.175 24 C 0.360 3.640 25 O -0.385 6.385 26 N -0.234 5.234 27 C -0.010 4.010 28 C -0.223 4.223 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.192 0.808 38 H 0.159 0.841 39 H 0.154 0.846 40 H 0.161 0.839 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.265 10.314 -6.591 12.447 hybrid contribution 0.221 1.082 1.868 2.170 sum -2.044 11.396 -4.722 12.504 Atomic orbital electron populations 1.22294 1.00273 0.98949 1.01137 1.20960 0.90422 0.85466 1.01231 1.43808 1.73240 1.11439 0.99652 1.18938 1.37648 0.97045 0.87910 0.92264 1.25218 0.95243 0.97538 0.98973 1.69997 1.30988 1.19985 1.30108 0.86575 0.78466 0.78745 0.84264 1.20729 1.21237 1.20235 1.19678 0.87106 0.94283 0.91046 1.27525 1.02310 0.79326 0.96654 1.74157 1.00485 1.20013 1.16131 1.74577 1.22750 0.94425 1.22523 1.21423 0.86837 0.89907 0.98882 1.43830 1.18738 1.11211 1.38238 1.17838 0.93614 0.86703 0.93856 1.21793 0.93172 1.02900 0.96478 1.21390 0.99536 0.91945 0.94886 1.21264 0.96163 0.97359 1.00805 1.20948 0.93624 0.98341 0.92797 1.19476 0.97539 0.93814 1.06719 1.18095 0.84365 0.83594 0.77910 1.90811 1.65551 1.20483 1.61694 1.44462 1.24329 1.05934 1.48721 1.21757 0.82773 1.03170 0.93309 1.22094 1.02820 1.01746 0.95656 0.93332 0.94719 0.93823 0.95024 0.89462 0.93038 0.90786 0.89624 0.80795 0.84060 0.84582 0.83869 0.88466 0.88490 0.92241 0.91805 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 10.22 37.16 0.38 -3.13 16 2 C 0.14 3.18 6.09 -4.04 -0.02 3.16 16 3 N -0.56 -12.49 2.39 -174.61 -0.42 -12.90 16 4 C -0.29 -6.82 8.17 -15.06 -0.12 -6.94 16 5 H 0.06 1.42 5.70 -52.49 -0.30 1.12 16 6 C 0.03 0.83 4.98 -17.43 -0.09 0.75 16 7 N -0.87 -22.46 11.65 55.49 0.65 -21.81 16 8 Si 0.89 19.84 29.60 -169.99 -5.03 14.81 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 C 0.21 4.00 5.75 -5.19 -0.03 3.97 16 13 C 0.21 4.11 7.67 -154.09 -1.18 2.93 16 14 N -0.27 -5.52 11.35 32.97 0.37 -5.15 16 15 N -0.30 -5.81 11.99 30.29 0.36 -5.45 16 16 C 0.38 7.04 8.28 -319.05 -2.64 4.40 16 17 N -0.43 -8.02 3.01 -58.27 -0.18 -8.20 16 18 C 0.18 3.02 6.64 -83.67 -0.56 2.47 16 19 C -0.12 -1.98 7.40 -39.49 -0.29 -2.27 16 20 C -0.06 -0.76 10.02 -39.51 -0.40 -1.15 16 21 C -0.14 -1.56 10.03 -39.57 -0.40 -1.96 16 22 C -0.04 -0.49 9.64 -39.29 -0.38 -0.87 16 23 C -0.17 -2.70 5.88 -104.91 -0.62 -3.31 16 24 C 0.57 9.37 7.64 -12.45 -0.10 9.28 16 25 O -0.51 -8.68 16.10 5.24 0.08 -8.60 16 26 N -0.51 -8.17 2.66 -117.87 -0.31 -8.48 16 27 C 0.11 1.43 6.04 -4.04 -0.02 1.41 16 28 C -0.17 -1.84 10.24 37.16 0.38 -1.46 16 29 H 0.05 1.03 7.30 -51.93 -0.38 0.65 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 33 H 0.09 2.15 5.75 -51.93 -0.30 1.85 16 34 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 35 H 0.07 1.32 5.33 -51.93 -0.28 1.04 16 36 H 0.09 1.51 7.80 -51.93 -0.41 1.11 16 37 H 0.18 3.03 3.18 -52.48 -0.17 2.86 16 38 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.62 7.76 -52.48 -0.41 1.21 16 41 H 0.10 1.22 7.88 -51.93 -0.41 0.81 16 42 H 0.10 1.17 7.41 -51.93 -0.38 0.78 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -28.81 365.82 -10.57 -39.38 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.53 Total: 3.64 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -6.08 Total: 7.25 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 0.48 Total: -61.99 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.08 Total: -8.60 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.81 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.81 -10.57 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298037007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.225 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds