Wall clock time and date at job start Wed Apr 1 2020 00:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46950 * 2 1 4 4 C 1.36931 * 120.00399 * 86.24169 * 3 2 1 5 5 H 1.08002 * 120.00181 * 221.58320 * 4 3 2 6 6 C 1.38817 * 120.00300 * 41.57936 * 4 3 2 7 7 N 1.31625 * 119.99303 * 20.37837 * 6 4 3 8 8 Si 1.86793 * 120.00544 * 200.38129 * 6 4 3 9 9 H 1.48499 * 109.47141 * 59.99553 * 8 6 4 10 10 H 1.48501 * 109.47222 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47184 * 299.99760 * 8 6 4 12 12 C 1.46500 * 119.99829 * 266.24104 * 3 2 1 13 13 C 1.50701 * 109.47174 * 95.27404 * 12 3 2 14 14 N 1.30438 * 126.42445 * 270.33921 * 13 12 3 15 15 N 1.28529 * 110.10794 * 179.85736 * 14 13 12 16 16 C 1.31478 * 109.89814 * 0.41515 * 15 14 13 17 17 N 1.36474 * 106.77818 * 359.75408 * 16 15 14 18 18 C 1.38909 * 120.92753 * 179.97438 * 17 16 15 19 19 C 1.38656 * 121.31636 * 180.02562 * 18 17 16 20 20 C 1.38063 * 119.88153 * 179.97438 * 19 18 17 21 21 C 1.38614 * 120.59595 * 0.02562 * 20 19 18 22 22 C 1.37896 * 120.34221 * 0.02562 * 21 20 19 23 23 C 1.39353 * 119.60975 * 359.97438 * 22 21 20 24 24 C 1.47422 * 121.32558 * 180.02562 * 23 22 21 25 25 O 1.21638 * 120.57592 * 359.97438 * 24 23 22 26 26 N 1.34937 * 118.85328 * 179.97438 * 24 23 22 27 27 C 1.46497 * 119.51533 * 179.97438 * 26 24 23 28 28 C 1.52999 * 109.47249 * 89.99839 * 27 26 24 29 29 H 1.09000 * 109.46845 * 60.00522 * 1 2 3 30 30 H 1.09003 * 109.46830 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47406 * 299.99980 * 1 2 3 32 32 H 1.09000 * 109.47140 * 239.99696 * 2 1 3 33 33 H 1.09006 * 109.47231 * 119.99592 * 2 1 3 34 34 H 0.97001 * 120.00001 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47236 * 215.27288 * 12 3 2 36 36 H 1.09004 * 109.47419 * 335.27363 * 12 3 2 37 37 H 1.08003 * 120.06278 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.70683 * 180.02562 * 20 19 18 39 39 H 1.08001 * 119.83013 * 179.97438 * 21 20 19 40 40 H 1.08007 * 120.19557 * 179.97438 * 22 21 20 41 41 H 1.08996 * 109.47430 * 210.00542 * 27 26 24 42 42 H 1.09006 * 109.46667 * 329.99896 * 27 26 24 43 43 H 1.08999 * 109.46942 * 299.99915 * 28 27 26 44 44 H 1.08996 * 109.46957 * 60.00862 * 28 27 26 45 45 H 1.09005 * 109.46574 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1732 2.0527 1.1833 5 1 1.8739 3.0876 1.2601 6 6 2.7150 1.4034 2.2841 7 7 3.4365 0.3153 2.1169 8 14 2.4201 2.0736 4.0025 9 1 0.9617 2.0965 4.2814 10 1 3.1000 1.2045 4.9963 11 1 2.9636 3.4524 4.0961 12 6 2.3408 2.0441 -1.2660 13 6 1.1541 2.8500 -1.7277 14 7 0.1808 2.4297 -2.4877 15 7 -0.6671 3.3755 -2.6834 16 6 -0.2741 4.4647 -2.0606 17 7 0.8990 4.1587 -1.4339 18 6 1.5761 5.1103 -0.6819 19 6 2.7687 4.8083 -0.0423 20 6 3.4172 5.7772 0.6971 21 6 2.8869 7.0531 0.8077 22 6 1.7014 7.3715 0.1795 23 6 1.0372 6.4023 -0.5698 24 6 -0.2320 6.7017 -1.2575 25 8 -0.7293 7.8093 -1.1838 26 7 -0.8325 5.7258 -1.9700 27 6 -2.0945 6.0072 -2.6587 28 6 -1.8021 6.5125 -4.0729 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 3.8155 -0.1383 2.8860 35 1 3.1954 2.7053 -1.1225 36 1 2.5847 1.2931 -2.0176 37 1 3.1896 3.8168 -0.1223 38 1 4.3461 5.5390 1.1938 39 1 3.4044 7.8014 1.3897 40 1 1.2900 8.3663 0.2676 41 1 -2.6893 5.0956 -2.7143 42 1 -2.6470 6.7685 -2.1079 43 1 -1.2073 7.4242 -4.0173 44 1 -1.2496 5.7512 -4.6237 45 1 -2.7411 6.7223 -4.5851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298037007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:03 Heat of formation + Delta-G solvation = 106.920095 kcal Electronic energy + Delta-G solvation = -31171.121362 eV Core-core repulsion = 27191.138172 eV Total energy + Delta-G solvation = -3979.983190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.70456 -41.76020 -39.99640 -38.01730 -37.60249 -36.13747 -33.90531 -33.26157 -32.03601 -31.66044 -31.06592 -30.46705 -27.87579 -26.21354 -25.74398 -24.65699 -24.34857 -23.50110 -22.53776 -21.65384 -20.67875 -20.10936 -18.71500 -18.33372 -18.18818 -17.61231 -17.04572 -16.79752 -16.25238 -16.00737 -15.73369 -15.63313 -15.42262 -15.20790 -15.08798 -14.87001 -14.59661 -14.11032 -13.87398 -13.76483 -13.32922 -13.20299 -13.17741 -13.01088 -12.79541 -12.76559 -12.53528 -12.45808 -12.39500 -12.21472 -12.07594 -12.01639 -11.91221 -11.63116 -11.44768 -11.23610 -10.58570 -10.27625 -9.73340 -9.48694 -8.64537 -7.87790 -5.56770 -0.61967 -0.22535 0.64021 0.73834 1.32142 1.38757 1.42754 1.49812 1.52993 1.74504 2.46567 2.63132 2.79410 3.00468 3.21988 3.45381 3.58166 3.65709 3.68475 3.86871 3.97052 4.05778 4.15536 4.18358 4.29242 4.37191 4.47401 4.54204 4.61966 4.69636 4.72690 4.78894 4.90050 4.93505 4.97019 5.04173 5.07734 5.11935 5.16977 5.19665 5.33721 5.41732 5.42750 5.64765 5.67419 5.81195 5.89623 6.38112 6.43827 7.09755 7.45498 7.71013 8.29691 9.08504 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.005267 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.451076 B = 5315.117734 C = 6856.764350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.146 3.854 3 N -0.575 5.575 4 C -0.277 4.277 5 H 0.058 0.942 6 C -0.005 4.005 7 N -0.899 5.899 8 Si 0.935 3.065 9 H -0.297 1.297 10 H -0.291 1.291 11 H -0.259 1.259 12 C 0.214 3.786 13 C 0.204 3.796 14 N -0.289 5.289 15 N -0.314 5.314 16 C 0.385 3.615 17 N -0.432 5.432 18 C 0.147 3.853 19 C -0.139 4.139 20 C -0.055 4.055 21 C -0.115 4.115 22 C -0.033 4.033 23 C -0.186 4.186 24 C 0.566 3.434 25 O -0.519 6.519 26 N -0.506 5.506 27 C 0.103 3.897 28 C -0.155 4.155 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.019 0.981 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.255 0.745 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.156 0.844 38 H 0.166 0.834 39 H 0.181 0.819 40 H 0.163 0.837 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.790 13.210 -5.400 14.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 N -0.294 5.294 4 C -0.406 4.406 5 H 0.075 0.925 6 C -0.205 4.205 7 N -0.540 5.540 8 Si 0.764 3.236 9 H -0.224 1.224 10 H -0.217 1.217 11 H -0.184 1.184 12 C 0.084 3.916 13 C -0.066 4.066 14 N -0.125 5.125 15 N -0.160 5.160 16 C 0.031 3.969 17 N -0.123 5.123 18 C 0.051 3.949 19 C -0.158 4.158 20 C -0.074 4.074 21 C -0.133 4.133 22 C -0.053 4.053 23 C -0.192 4.192 24 C 0.358 3.642 25 O -0.394 6.394 26 N -0.236 5.236 27 C -0.017 4.017 28 C -0.213 4.213 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.173 0.827 38 H 0.183 0.817 39 H 0.198 0.802 40 H 0.181 0.819 41 H 0.116 0.884 42 H 0.126 0.874 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.856 12.705 -6.132 14.229 hybrid contribution 0.084 0.473 1.692 1.759 sum -1.773 13.178 -4.441 14.018 Atomic orbital electron populations 1.22138 0.99558 0.99880 0.99571 1.20871 0.90885 0.85628 1.00589 1.43898 1.73689 1.11495 1.00352 1.19050 1.36099 0.96897 0.88572 0.92475 1.25695 0.95638 0.98029 1.01187 1.70087 1.32436 1.21172 1.30283 0.85864 0.77142 0.79124 0.81515 1.22376 1.21669 1.18361 1.19742 0.87348 0.94601 0.89898 1.27249 1.02226 0.80023 0.97085 1.74080 1.00938 1.20728 1.16800 1.74490 1.23117 0.94837 1.23570 1.21569 0.86721 0.90386 0.98236 1.43856 1.18905 1.11217 1.38284 1.18098 0.94541 0.87008 0.95234 1.21728 0.93309 1.02999 0.97752 1.21759 1.00004 0.91943 0.93671 1.21732 0.95018 0.97371 0.99211 1.21320 0.93820 0.98471 0.91650 1.19701 0.97704 0.94034 1.07717 1.18287 0.84644 0.83472 0.77807 1.90797 1.65940 1.20567 1.62145 1.44718 1.24995 1.05046 1.48817 1.22029 0.81770 1.03610 0.94249 1.22030 1.04029 1.00744 0.94511 0.93860 0.92571 0.96131 0.93752 0.91937 0.93544 0.89609 0.88535 0.82677 0.81663 0.80159 0.81901 0.88387 0.87434 0.92798 0.93208 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.41 10.22 71.98 0.74 -5.68 16 2 C 0.15 6.47 6.09 86.38 0.53 7.00 16 3 N -0.58 -25.68 2.39 -706.33 -1.69 -27.37 16 4 C -0.28 -13.19 8.17 84.04 0.69 -12.50 16 5 H 0.06 2.74 5.70 -2.91 -0.02 2.72 16 6 C -0.01 -0.25 4.98 84.86 0.42 0.17 16 7 N -0.90 -46.78 11.65 21.65 0.25 -46.53 16 8 Si 0.94 40.44 29.60 68.60 2.03 42.47 16 9 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 12 C 0.21 8.20 5.75 85.63 0.49 8.69 16 13 C 0.20 8.01 7.67 137.67 1.06 9.07 16 14 N -0.29 -11.90 11.35 -49.59 -0.56 -12.46 16 15 N -0.31 -12.44 11.99 -58.09 -0.70 -13.14 16 16 C 0.39 14.24 8.28 260.17 2.16 16.39 16 17 N -0.43 -16.23 3.01 -338.27 -1.02 -17.24 16 18 C 0.15 4.93 6.64 38.66 0.26 5.19 16 19 C -0.14 -4.25 7.40 22.33 0.17 -4.08 16 20 C -0.06 -1.25 10.02 22.32 0.22 -1.03 16 21 C -0.12 -2.12 10.03 22.28 0.22 -1.90 16 22 C -0.03 -0.76 9.64 22.46 0.22 -0.54 16 23 C -0.19 -5.64 5.88 -20.05 -0.12 -5.75 16 24 C 0.57 18.07 7.64 86.64 0.66 18.73 16 25 O -0.52 -16.84 16.10 -4.15 -0.07 -16.90 16 26 N -0.51 -16.18 2.66 -645.00 -1.71 -17.89 16 27 C 0.10 2.58 6.04 86.38 0.52 3.11 16 28 C -0.16 -3.28 10.24 71.98 0.74 -2.55 16 29 H 0.04 1.85 7.30 -2.39 -0.02 1.83 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.04 1.82 7.81 -2.39 -0.02 1.80 16 33 H 0.06 3.14 5.75 -2.38 -0.01 3.12 16 34 H 0.26 13.01 8.31 -92.71 -0.77 12.24 16 35 H 0.09 3.07 5.33 -2.39 -0.01 3.05 16 36 H 0.10 3.41 7.80 -2.38 -0.02 3.40 16 37 H 0.16 5.35 3.18 -2.91 -0.01 5.34 16 38 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 39 H 0.18 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.16 3.06 7.76 -2.91 -0.02 3.04 16 41 H 0.10 2.42 7.88 -2.39 -0.02 2.41 16 42 H 0.11 2.46 7.41 -2.38 -0.02 2.44 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -62.70 365.82 6.54 -56.16 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 1.04 Total: 18.61 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 8.96 Total: 34.32 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -5.43 Total: -134.64 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.07 Total: -16.90 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -62.70 6.54 -56.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298037007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.076 kcal (2) G-P(sol) polarization free energy of solvation -62.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds