Wall clock time and date at job start Wed Apr 1 2020 01:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46893 * 109.47288 * 2 1 4 4 C 1.46908 * 110.99975 * 297.33866 * 3 2 1 5 5 C 1.50706 * 109.46752 * 288.62380 * 4 3 2 6 6 H 1.08001 * 120.00187 * 0.97216 * 5 4 3 7 7 C 1.37871 * 119.99848 * 180.98039 * 5 4 3 8 8 N 1.31513 * 120.00201 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00028 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47181 * 90.00793 * 9 7 5 11 11 H 1.48500 * 109.47364 * 210.00750 * 9 7 5 12 12 H 1.48504 * 109.47263 * 330.00728 * 9 7 5 13 13 C 1.46899 * 110.99833 * 61.28885 * 3 2 1 14 14 C 1.50695 * 109.47330 * 66.05059 * 13 3 2 15 15 C 1.39876 * 126.03644 * 269.97511 * 14 13 3 16 16 N 1.30832 * 108.20246 * 180.02562 * 15 14 13 17 17 N 1.40088 * 108.20508 * 359.77675 * 16 15 14 18 18 C 1.46501 * 126.03945 * 180.23223 * 17 16 15 19 19 C 1.52999 * 108.89681 * 103.83826 * 18 17 16 20 20 C 1.52975 * 108.93290 * 222.39641 * 18 17 16 21 21 C 1.55095 * 108.66739 * 90.80671 * 20 18 17 22 22 S 1.83848 * 101.18810 * 41.87185 * 21 20 18 23 23 O 1.42105 * 109.61384 * 211.04940 * 22 21 20 24 24 O 1.42099 * 109.61653 * 77.09836 * 22 21 20 25 25 C 1.53628 * 108.92896 * 345.15948 * 18 17 16 26 26 C 1.34946 * 107.92482 * 0.36749 * 17 16 15 27 27 H 1.08999 * 109.46934 * 60.05011 * 1 2 3 28 28 H 1.08999 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47000 * 300.04659 * 1 2 3 30 30 H 1.09004 * 109.46753 * 240.00132 * 2 1 3 31 31 H 1.08998 * 109.47130 * 120.00155 * 2 1 3 32 32 H 1.08989 * 109.47401 * 48.62370 * 4 3 2 33 33 H 1.09008 * 109.46906 * 168.62717 * 4 3 2 34 34 H 0.97002 * 120.00316 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47501 * 306.04329 * 13 3 2 36 36 H 1.09007 * 109.47075 * 186.05042 * 13 3 2 37 37 H 1.08004 * 125.89617 * 359.97438 * 15 14 13 38 38 H 1.08992 * 109.47001 * 59.30473 * 19 18 17 39 39 H 1.09006 * 109.47040 * 179.30288 * 19 18 17 40 40 H 1.08997 * 109.47358 * 299.29940 * 19 18 17 41 41 H 1.09006 * 109.64848 * 210.64675 * 20 18 17 42 42 H 1.08998 * 109.64904 * 330.96222 * 20 18 17 43 43 H 1.08996 * 111.07525 * 283.89745 * 21 20 18 44 44 H 1.08994 * 111.08189 * 159.84863 * 21 20 18 45 45 H 1.08993 * 110.27257 * 0.59564 * 25 18 17 46 46 H 1.08993 * 110.26972 * 122.66286 * 25 18 17 47 47 H 1.07999 * 126.12586 * 179.90090 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6014 2.0912 -1.2183 5 6 2.3744 1.5595 -2.3977 6 1 3.0922 0.7645 -2.2589 7 6 2.1655 2.0880 -3.6538 8 7 2.8397 1.6237 -4.6831 9 14 0.9237 3.4627 -3.8940 10 1 1.5989 4.7746 -3.7262 11 1 0.3455 3.3746 -5.2590 12 1 -0.1606 3.3317 -2.8878 13 6 1.5741 2.1008 1.2028 14 6 2.2222 1.4915 2.4192 15 6 1.7068 0.4428 3.1880 16 7 2.5502 0.1932 4.1565 17 7 3.6330 1.0731 4.0315 18 6 4.8043 1.1286 4.9098 19 6 5.9904 0.4773 4.1957 20 6 5.1427 2.5932 5.1938 21 6 4.3879 3.0379 6.4736 22 16 4.6161 1.5664 7.5518 23 8 3.4950 1.4284 8.4141 24 8 5.9330 1.5658 8.0856 25 6 4.5021 0.3414 6.1939 26 6 3.4053 1.8625 2.9610 27 1 -0.3633 0.5131 -0.8904 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5145 0.8895 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.5354 1.9337 -1.3818 33 1 1.7981 3.1575 -1.1058 34 1 2.6924 1.9952 -5.5669 35 1 0.4904 2.0234 1.2912 36 1 1.8582 3.1505 1.1271 37 1 0.7733 -0.0715 3.0128 38 1 6.1898 1.0077 3.2647 39 1 6.8709 0.5247 4.8366 40 1 5.7556 -0.5644 3.9774 41 1 6.2169 2.6983 5.3465 42 1 4.8319 3.2112 4.3514 43 1 3.3321 3.2115 6.2656 44 1 4.8494 3.9218 6.9138 45 1 3.4986 -0.0817 6.1502 46 1 5.2399 -0.4484 6.3350 47 1 4.0535 2.6467 2.5988 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332394620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:23 Heat of formation + Delta-G solvation = 33.364557 kcal Electronic energy + Delta-G solvation = -28389.704882 eV Core-core repulsion = 24509.683285 eV Total energy + Delta-G solvation = -3880.021597 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53075 -38.26436 -37.47894 -37.01937 -36.43688 -32.64180 -31.97790 -31.03283 -30.58867 -29.56441 -28.37653 -27.20473 -24.84417 -24.66023 -23.02369 -22.24866 -20.34987 -19.79621 -19.32915 -19.09956 -17.69406 -17.03130 -16.70946 -16.20491 -16.13594 -15.49140 -15.12189 -14.88121 -14.67780 -14.33724 -14.23351 -14.11874 -13.68663 -13.56877 -13.09448 -12.86479 -12.79816 -12.67517 -12.60071 -12.48511 -12.41613 -12.37804 -12.10830 -12.00431 -11.85091 -11.58448 -11.33450 -11.20128 -11.02567 -10.77373 -10.71611 -10.50257 -10.37436 -9.94618 -9.89005 -9.37163 -9.29421 -8.56790 -8.33645 -7.25292 -6.04900 -4.01215 -0.45548 1.86492 1.95067 2.24101 2.88275 3.01935 3.26582 3.34836 3.35779 3.41435 3.73039 3.77777 3.93262 4.27897 4.33062 4.41231 4.74385 4.77636 4.88513 4.93193 5.01772 5.10683 5.13877 5.14927 5.16544 5.27991 5.42403 5.56322 5.62943 5.69199 5.72927 5.83091 5.93260 6.02727 6.09126 6.31404 6.44906 6.50245 6.70353 6.81010 6.94149 6.98599 7.08387 7.63011 7.70539 7.95232 8.09400 8.68383 9.05285 9.57364 11.08544 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.002489 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.899938 B =11248.278116 C =11533.263648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.062 3.938 3 N -0.520 5.520 4 C 0.157 3.843 5 C -0.503 4.503 6 H 0.079 0.921 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.120 3.880 14 C -0.205 4.205 15 C 0.060 3.940 16 N -0.305 5.305 17 N -0.376 5.376 18 C 0.208 3.792 19 C -0.165 4.165 20 C -0.139 4.139 21 C -0.577 4.577 22 S 2.383 3.617 23 O -0.931 6.931 24 O -0.929 6.929 25 C -0.593 4.593 26 C 0.067 3.933 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.057 0.943 32 H -0.003 1.003 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.179 0.821 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.167 0.833 46 H 0.148 0.852 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.437 1.386 22.804 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.067 4.067 3 N -0.243 5.243 4 C 0.031 3.969 5 C -0.541 4.541 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.009 4.009 14 C -0.217 4.217 15 C -0.126 4.126 16 N -0.125 5.125 17 N -0.160 5.160 18 C 0.123 3.877 19 C -0.223 4.223 20 C -0.179 4.179 21 C -0.707 4.707 22 S 2.566 3.434 23 O -0.928 6.928 24 O -0.926 6.926 25 C -0.722 4.722 26 C -0.077 4.077 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.014 0.986 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.196 0.804 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.157 0.843 44 H 0.161 0.839 45 H 0.185 0.815 46 H 0.166 0.834 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.488 0.576 24.718 25.129 hybrid contribution -1.850 1.303 -2.097 3.085 sum 2.638 1.880 22.621 22.852 Atomic orbital electron populations 1.22416 0.99669 1.01183 1.01669 1.21964 0.91700 0.91206 1.01819 1.62213 1.59023 1.01831 1.01267 1.20247 0.94678 0.93768 0.88215 1.21026 1.22692 1.20582 0.89819 0.90301 1.24897 0.95850 0.96704 0.95981 1.69893 1.41779 1.42836 0.99681 0.86897 0.82369 0.83108 0.77562 1.20256 1.21319 1.19256 1.20404 0.96062 0.97035 0.87439 1.20087 0.97598 1.02484 1.01497 1.23786 0.99080 0.96898 0.92868 1.77080 0.96616 1.14642 1.24168 1.48614 1.16441 1.27819 1.23127 1.20502 0.84397 0.94248 0.88529 1.22448 0.95642 1.02524 1.01694 1.22664 1.02506 0.93708 0.98995 1.30569 1.10183 1.18788 1.11138 1.09364 0.75533 0.80446 0.78102 1.93637 1.52336 1.84545 1.62328 1.93645 1.37212 1.85368 1.76397 1.30809 1.14541 1.15255 1.11594 1.22148 0.98050 0.97873 0.89666 0.91837 0.93158 0.93441 0.90097 0.92440 0.98590 0.96213 0.92744 0.94507 0.91100 0.80441 0.90422 0.89800 0.90587 0.86936 0.86874 0.84267 0.83853 0.81497 0.83352 0.81042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.06 9.27 37.16 0.34 -2.72 16 2 C 0.06 1.12 5.67 -3.83 -0.02 1.09 16 3 N -0.52 -10.13 4.65 -237.51 -1.10 -11.23 16 4 C 0.16 3.60 3.66 -4.97 -0.02 3.58 16 5 C -0.50 -13.84 9.12 -34.44 -0.31 -14.16 16 6 H 0.08 2.40 7.69 -52.49 -0.40 1.99 16 7 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 8 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 9 Si 0.87 20.96 27.45 -169.99 -4.67 16.30 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.16 6.57 56.52 0.37 -5.79 16 13 C 0.12 1.87 5.22 -4.98 -0.03 1.84 16 14 C -0.21 -2.79 4.95 -105.05 -0.52 -3.31 16 15 C 0.06 0.78 10.59 -17.36 -0.18 0.60 16 16 N -0.30 -3.89 10.81 30.63 0.33 -3.55 16 17 N -0.38 -4.03 3.41 -48.36 -0.16 -4.19 16 18 C 0.21 1.58 1.10 -131.51 -0.14 1.44 16 19 C -0.16 -1.15 8.17 37.16 0.30 -0.85 16 20 C -0.14 -0.74 5.38 -25.64 -0.14 -0.88 16 21 C -0.58 -2.97 7.46 38.27 0.29 -2.69 16 22 S 2.38 17.82 6.05 -107.50 -0.65 17.17 16 23 O -0.93 -10.70 18.16 -57.67 -1.05 -11.74 16 24 O -0.93 -9.22 18.16 -57.67 -1.05 -10.27 16 25 C -0.59 -4.23 6.60 37.48 0.25 -3.98 16 26 C 0.07 0.79 10.19 -17.23 -0.18 0.61 16 27 H 0.06 1.16 6.24 -51.93 -0.32 0.84 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.67 6.30 -51.93 -0.33 0.35 16 30 H 0.08 1.69 7.16 -51.93 -0.37 1.32 16 31 H 0.06 0.96 6.25 -51.93 -0.32 0.63 16 32 H 0.00 -0.08 5.01 -51.94 -0.26 -0.34 16 33 H 0.02 0.45 7.20 -51.92 -0.37 0.08 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 35 H 0.04 0.56 6.04 -51.93 -0.31 0.24 16 36 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 37 H 0.18 2.02 8.06 -52.48 -0.42 1.60 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.11 0.36 7.81 -51.93 -0.41 -0.05 16 42 H 0.11 0.57 6.19 -51.93 -0.32 0.25 16 43 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.14 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.17 1.44 6.47 -51.93 -0.34 1.11 16 46 H 0.15 0.75 7.63 -51.93 -0.40 0.36 16 47 H 0.17 1.64 7.26 -52.49 -0.38 1.26 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -36.58 376.55 -9.43 -46.01 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -7.07 Total: -0.07 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -0.46 Total: -17.62 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -0.17 Total: -45.46 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -2.09 Total: -22.01 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.30 kcal Atomic # 16 Polarization: 17.82 SS G_CDS: -0.65 Total: 17.17 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.58 -9.43 -46.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332394620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.374 kcal (2) G-P(sol) polarization free energy of solvation -36.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds