Wall clock time and date at job start Wed Apr 1 2020 01:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46893 * 109.47288 * 2 1 4 4 C 1.46908 * 110.99975 * 297.33866 * 3 2 1 5 5 C 1.50706 * 109.46752 * 288.62380 * 4 3 2 6 6 H 1.08001 * 120.00187 * 0.97216 * 5 4 3 7 7 C 1.37871 * 119.99848 * 180.98039 * 5 4 3 8 8 N 1.31513 * 120.00201 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00028 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47181 * 90.00793 * 9 7 5 11 11 H 1.48500 * 109.47364 * 210.00750 * 9 7 5 12 12 H 1.48504 * 109.47263 * 330.00728 * 9 7 5 13 13 C 1.46899 * 110.99833 * 61.28885 * 3 2 1 14 14 C 1.50695 * 109.47330 * 66.05059 * 13 3 2 15 15 C 1.39876 * 126.03644 * 269.97511 * 14 13 3 16 16 N 1.30832 * 108.20246 * 180.02562 * 15 14 13 17 17 N 1.40088 * 108.20508 * 359.77675 * 16 15 14 18 18 C 1.46501 * 126.03945 * 180.23223 * 17 16 15 19 19 C 1.52999 * 108.89681 * 103.83826 * 18 17 16 20 20 C 1.52975 * 108.93290 * 222.39641 * 18 17 16 21 21 C 1.55095 * 108.66739 * 90.80671 * 20 18 17 22 22 S 1.83848 * 101.18810 * 41.87185 * 21 20 18 23 23 O 1.42105 * 109.61384 * 211.04940 * 22 21 20 24 24 O 1.42099 * 109.61653 * 77.09836 * 22 21 20 25 25 C 1.53628 * 108.92896 * 345.15948 * 18 17 16 26 26 C 1.34946 * 107.92482 * 0.36749 * 17 16 15 27 27 H 1.08999 * 109.46934 * 60.05011 * 1 2 3 28 28 H 1.08999 * 109.47079 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47000 * 300.04659 * 1 2 3 30 30 H 1.09004 * 109.46753 * 240.00132 * 2 1 3 31 31 H 1.08998 * 109.47130 * 120.00155 * 2 1 3 32 32 H 1.08989 * 109.47401 * 48.62370 * 4 3 2 33 33 H 1.09008 * 109.46906 * 168.62717 * 4 3 2 34 34 H 0.97002 * 120.00316 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47501 * 306.04329 * 13 3 2 36 36 H 1.09007 * 109.47075 * 186.05042 * 13 3 2 37 37 H 1.08004 * 125.89617 * 359.97438 * 15 14 13 38 38 H 1.08992 * 109.47001 * 59.30473 * 19 18 17 39 39 H 1.09006 * 109.47040 * 179.30288 * 19 18 17 40 40 H 1.08997 * 109.47358 * 299.29940 * 19 18 17 41 41 H 1.09006 * 109.64848 * 210.64675 * 20 18 17 42 42 H 1.08998 * 109.64904 * 330.96222 * 20 18 17 43 43 H 1.08996 * 111.07525 * 283.89745 * 21 20 18 44 44 H 1.08994 * 111.08189 * 159.84863 * 21 20 18 45 45 H 1.08993 * 110.27257 * 0.59564 * 25 18 17 46 46 H 1.08993 * 110.26972 * 122.66286 * 25 18 17 47 47 H 1.07999 * 126.12586 * 179.90090 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6014 2.0912 -1.2183 5 6 2.3744 1.5595 -2.3977 6 1 3.0922 0.7645 -2.2589 7 6 2.1655 2.0880 -3.6538 8 7 2.8397 1.6237 -4.6831 9 14 0.9237 3.4627 -3.8940 10 1 1.5989 4.7746 -3.7262 11 1 0.3455 3.3746 -5.2590 12 1 -0.1606 3.3317 -2.8878 13 6 1.5741 2.1008 1.2028 14 6 2.2222 1.4915 2.4192 15 6 1.7068 0.4428 3.1880 16 7 2.5502 0.1932 4.1565 17 7 3.6330 1.0731 4.0315 18 6 4.8043 1.1286 4.9098 19 6 5.9904 0.4773 4.1957 20 6 5.1427 2.5932 5.1938 21 6 4.3879 3.0379 6.4736 22 16 4.6161 1.5664 7.5518 23 8 3.4950 1.4284 8.4141 24 8 5.9330 1.5658 8.0856 25 6 4.5021 0.3414 6.1939 26 6 3.4053 1.8625 2.9610 27 1 -0.3633 0.5131 -0.8904 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5145 0.8895 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.5354 1.9337 -1.3818 33 1 1.7981 3.1575 -1.1058 34 1 2.6924 1.9952 -5.5669 35 1 0.4904 2.0234 1.2912 36 1 1.8582 3.1505 1.1271 37 1 0.7733 -0.0715 3.0128 38 1 6.1898 1.0077 3.2647 39 1 6.8709 0.5247 4.8366 40 1 5.7556 -0.5644 3.9774 41 1 6.2169 2.6983 5.3465 42 1 4.8319 3.2112 4.3514 43 1 3.3321 3.2115 6.2656 44 1 4.8494 3.9218 6.9138 45 1 3.4986 -0.0817 6.1502 46 1 5.2399 -0.4484 6.3350 47 1 4.0535 2.6467 2.5988 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332394620.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:22 Heat of formation + Delta-G solvation = 4.995923 kcal Electronic energy + Delta-G solvation = -28390.935038 eV Core-core repulsion = 24509.683285 eV Total energy + Delta-G solvation = -3881.251754 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.40327 -39.18384 -38.40088 -38.00209 -37.14804 -34.68785 -32.69768 -32.03891 -31.41716 -31.16480 -29.08292 -28.64187 -25.97434 -25.31191 -24.57463 -23.27500 -21.57812 -20.56245 -20.41639 -19.90579 -18.84542 -18.36581 -17.60856 -16.87290 -16.84192 -16.65749 -16.60981 -16.07436 -15.90279 -15.43277 -14.93721 -14.87293 -14.71586 -14.48692 -14.37717 -14.32956 -13.79999 -13.59689 -13.36219 -13.35947 -13.25489 -13.24175 -13.16593 -12.94027 -12.71054 -12.62426 -12.51879 -12.48009 -12.33808 -12.10933 -11.87060 -11.82065 -11.55930 -11.39016 -11.32463 -11.21362 -10.71143 -10.26249 -9.33424 -8.74941 -8.22227 -6.23850 -1.03295 0.98360 1.36747 1.38420 1.40192 1.50490 1.51588 1.87702 2.39200 2.45540 2.85563 3.11948 3.17280 3.22069 3.43888 3.57259 3.70376 3.93340 3.94008 4.05641 4.29722 4.32321 4.37821 4.41324 4.52233 4.56230 4.57854 4.67888 4.71553 4.73989 4.77003 4.79707 4.82602 4.88796 5.05033 5.05511 5.15164 5.18699 5.33021 5.34016 5.52665 5.64659 5.75207 6.09849 6.15781 6.52811 6.78802 6.79904 6.83305 7.39510 8.94937 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.002489 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.899938 B =11248.278116 C =11533.263648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.067 3.933 3 N -0.536 5.536 4 C 0.167 3.833 5 C -0.505 4.505 6 H 0.032 0.968 7 C 0.004 3.996 8 N -0.954 5.954 9 Si 0.946 3.054 10 H -0.264 1.264 11 H -0.288 1.288 12 H -0.248 1.248 13 C 0.126 3.874 14 C -0.230 4.230 15 C 0.052 3.948 16 N -0.323 5.323 17 N -0.368 5.368 18 C 0.198 3.802 19 C -0.166 4.166 20 C -0.142 4.142 21 C -0.556 4.556 22 S 2.392 3.608 23 O -0.979 6.979 24 O -0.955 6.955 25 C -0.590 4.590 26 C 0.075 3.925 27 H 0.039 0.961 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.073 0.927 32 H -0.002 1.002 33 H 0.028 0.972 34 H 0.264 0.736 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.188 0.812 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.058 0.942 41 H 0.141 0.859 42 H 0.124 0.876 43 H 0.142 0.858 44 H 0.172 0.828 45 H 0.153 0.847 46 H 0.166 0.834 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 3.497 24.282 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.061 4.061 3 N -0.259 5.259 4 C 0.040 3.960 5 C -0.544 4.544 6 H 0.050 0.950 7 C -0.192 4.192 8 N -0.595 5.595 9 Si 0.769 3.231 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.171 1.171 13 C -0.002 4.002 14 C -0.242 4.242 15 C -0.134 4.134 16 N -0.144 5.144 17 N -0.151 5.151 18 C 0.114 3.886 19 C -0.224 4.224 20 C -0.181 4.181 21 C -0.689 4.689 22 S 2.579 3.421 23 O -0.976 6.976 24 O -0.952 6.952 25 C -0.720 4.720 26 C -0.071 4.071 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.016 0.984 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.205 0.795 38 H 0.095 0.905 39 H 0.129 0.871 40 H 0.077 0.923 41 H 0.159 0.841 42 H 0.142 0.858 43 H 0.160 0.840 44 H 0.190 0.810 45 H 0.171 0.829 46 H 0.183 0.817 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 4.192 2.652 26.273 26.737 hybrid contribution -1.619 0.557 -2.519 3.046 sum 2.573 3.209 23.754 24.107 Atomic orbital electron populations 1.22308 0.97731 1.02392 1.01539 1.21834 0.93257 0.90532 1.00506 1.62089 1.59965 1.02337 1.01553 1.19989 0.93770 0.94052 0.88146 1.21279 1.21918 1.19195 0.91988 0.95014 1.25843 0.98138 0.99704 0.95515 1.70066 1.44140 1.44974 1.00362 0.85738 0.79966 0.79623 0.77744 1.18906 1.21380 1.17139 1.20366 0.96699 0.96977 0.86205 1.19966 0.98861 1.03772 1.01555 1.23972 0.99638 0.96928 0.92873 1.77069 0.97350 1.15493 1.24439 1.48894 1.16500 1.26710 1.23035 1.20919 0.83392 0.96176 0.88080 1.22495 0.96333 1.01331 1.02257 1.22823 1.04343 0.91792 0.99172 1.30475 1.10843 1.17683 1.09867 1.08929 0.73988 0.81144 0.78043 1.93573 1.53695 1.85654 1.64663 1.93605 1.38029 1.86072 1.77530 1.30759 1.14275 1.15746 1.11185 1.22488 0.97559 0.97823 0.89279 0.94168 0.91406 0.91099 0.94186 0.90879 0.98396 0.95432 0.92681 0.93733 0.90463 0.79533 0.90491 0.87073 0.92299 0.84070 0.85759 0.84014 0.80984 0.82933 0.81652 0.78797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.59 9.27 71.98 0.67 -4.92 16 2 C 0.07 2.43 5.67 86.31 0.49 2.92 16 3 N -0.54 -20.54 4.65 -905.34 -4.21 -24.75 16 4 C 0.17 7.58 3.66 85.56 0.31 7.89 16 5 C -0.51 -28.57 9.12 25.60 0.23 -28.34 16 6 H 0.03 2.04 7.69 -2.91 -0.02 2.01 16 7 C 0.00 0.25 5.47 84.65 0.46 0.71 16 8 N -0.95 -59.37 13.96 21.45 0.30 -59.07 16 9 Si 0.95 42.97 27.45 68.60 1.88 44.85 16 10 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 12 H -0.25 -10.37 6.57 99.48 0.65 -9.72 16 13 C 0.13 3.66 5.22 85.56 0.45 4.11 16 14 C -0.23 -5.80 4.95 -20.14 -0.10 -5.90 16 15 C 0.05 1.26 10.59 85.24 0.90 2.16 16 16 N -0.32 -7.81 10.81 -57.02 -0.62 -8.42 16 17 N -0.37 -7.11 3.41 -306.92 -1.05 -8.16 16 18 C 0.20 2.52 1.10 3.81 0.00 2.52 16 19 C -0.17 -1.93 8.17 71.98 0.59 -1.34 16 20 C -0.14 -0.97 5.38 31.30 0.17 -0.80 16 21 C -0.56 -3.90 7.46 72.70 0.54 -3.36 16 22 S 2.39 32.61 6.05 -56.49 -0.34 32.27 16 23 O -0.98 -22.40 18.16 -127.52 -2.32 -24.72 16 24 O -0.96 -17.58 18.16 -127.52 -2.32 -19.90 16 25 C -0.59 -7.58 6.60 72.19 0.48 -7.10 16 26 C 0.07 1.56 10.19 83.54 0.85 2.41 16 27 H 0.04 1.42 6.24 -2.39 -0.01 1.41 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 1.85 6.30 -2.39 -0.02 1.83 16 30 H 0.04 1.75 7.16 -2.38 -0.02 1.73 16 31 H 0.07 2.41 6.25 -2.39 -0.01 2.39 16 32 H 0.00 -0.07 5.01 -2.39 -0.01 -0.08 16 33 H 0.03 1.21 7.20 -2.38 -0.02 1.19 16 34 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.04 1.23 6.04 -2.39 -0.01 1.21 16 36 H 0.08 2.13 7.87 -2.38 -0.02 2.11 16 37 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 0.68 8.11 -2.38 -0.02 0.66 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.14 0.23 7.81 -2.38 -0.02 0.21 16 42 H 0.12 0.69 6.19 -2.39 -0.01 0.68 16 43 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.17 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.15 2.55 6.47 -2.39 -0.02 2.54 16 46 H 0.17 1.45 7.63 -2.39 -0.02 1.43 16 47 H 0.20 3.04 7.26 -2.91 -0.02 3.02 16 Total: -1.00 -82.17 376.55 -1.70 -83.86 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.92 Total: 13.06 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 6.05 Total: -29.02 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -5.58 Total: -100.41 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -4.63 Total: -44.62 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.88 Total: 44.85 kcal Atomic # 16 Polarization: 32.61 SS G_CDS: -0.34 Total: 32.27 kcal Total: -82.17 -1.70 -83.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332394620.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.861 kcal (2) G-P(sol) polarization free energy of solvation -82.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds