Wall clock time and date at job start Wed Apr 1 2020 01:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.46843 * 2 1 4 4 C 1.46893 * 111.00346 * 288.04314 * 3 2 1 5 5 C 1.50698 * 109.47410 * 160.36173 * 4 3 2 6 6 H 1.07998 * 119.99745 * 4.65114 * 5 4 3 7 7 C 1.37878 * 119.99956 * 184.65933 * 5 4 3 8 8 N 1.31510 * 120.00188 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99786 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47337 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47592 * 119.99786 * 9 7 5 12 12 H 1.48504 * 109.47134 * 239.99824 * 9 7 5 13 13 C 1.46896 * 110.99748 * 164.08514 * 3 2 1 14 14 C 1.50702 * 109.47572 * 293.95779 * 13 3 2 15 15 C 1.39876 * 126.03710 * 270.00374 * 14 13 3 16 16 N 1.30840 * 108.20067 * 179.97438 * 15 14 13 17 17 N 1.40085 * 108.20315 * 359.97438 * 16 15 14 18 18 C 1.46504 * 126.03227 * 180.26231 * 17 16 15 19 19 C 1.53004 * 108.89759 * 226.00415 * 18 17 16 20 20 C 1.52969 * 108.93200 * 107.45381 * 18 17 16 21 21 C 1.55094 * 108.66749 * 209.32990 * 20 18 17 22 22 S 1.83845 * 101.18654 * 41.87376 * 21 20 18 23 23 O 1.42097 * 109.61290 * 211.04633 * 22 21 20 24 24 O 1.42105 * 109.78252 * 77.13636 * 22 21 20 25 25 C 1.53615 * 108.93271 * 344.68815 * 18 17 16 26 26 C 1.34948 * 107.93005 * 359.97438 * 17 16 15 27 27 H 1.08999 * 109.47209 * 299.46295 * 1 2 3 28 28 H 1.08994 * 109.47632 * 59.46696 * 1 2 3 29 29 H 1.09007 * 109.46968 * 179.46952 * 1 2 3 30 30 H 1.09004 * 109.47132 * 240.00614 * 2 1 3 31 31 H 1.08993 * 109.47455 * 120.00102 * 2 1 3 32 32 H 1.09005 * 109.46956 * 280.35875 * 4 3 2 33 33 H 1.08997 * 109.47494 * 40.35451 * 4 3 2 34 34 H 0.96998 * 120.00522 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.47232 * 173.95318 * 13 3 2 36 36 H 1.08996 * 109.47292 * 53.95626 * 13 3 2 37 37 H 1.07995 * 125.89612 * 359.97286 * 15 14 13 38 38 H 1.09004 * 109.47037 * 60.70423 * 19 18 17 39 39 H 1.08999 * 109.47280 * 180.69896 * 19 18 17 40 40 H 1.09000 * 109.47192 * 300.70774 * 19 18 17 41 41 H 1.09003 * 109.65399 * 329.17804 * 20 18 17 42 42 H 1.09003 * 109.65333 * 89.49100 * 20 18 17 43 43 H 1.08999 * 111.08240 * 283.89876 * 21 20 18 44 44 H 1.09000 * 111.07973 * 159.85061 * 21 20 18 45 45 H 1.09004 * 110.26975 * 242.06815 * 25 18 17 46 46 H 1.08999 * 110.27069 * 4.04471 * 25 18 17 47 47 H 1.07995 * 126.12597 * 180.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7946 2.0230 -1.3039 5 6 1.8460 3.5208 -1.1459 6 1 2.1017 3.9545 -0.1905 7 6 1.5664 4.3374 -2.2211 8 7 1.2553 3.8093 -3.3846 9 14 1.6308 6.1940 -2.0254 10 1 2.0030 6.5319 -0.6280 11 1 2.6420 6.7552 -2.9570 12 1 0.2980 6.7710 -2.3355 13 6 3.4385 1.4418 0.3761 14 6 3.5960 1.0058 1.8100 15 6 3.5491 1.8382 2.9331 16 7 3.7259 1.0984 3.9977 17 7 3.8906 -0.2301 3.5851 18 6 4.1093 -1.3838 4.4611 19 6 5.2493 -2.2301 3.8908 20 6 2.8354 -2.2301 4.4947 21 6 2.7515 -2.9467 5.8675 22 16 3.2787 -1.6018 7.0047 23 8 3.9440 -2.1611 8.1289 24 8 2.2096 -0.6848 7.1935 25 6 4.5112 -0.8813 5.8560 26 6 3.8059 -0.2604 2.2386 27 1 -0.3633 0.5055 0.8947 28 1 -0.3634 0.5220 -0.8851 29 1 -0.3633 -1.0277 -0.0095 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.5684 1.7046 -2.0025 33 1 0.8168 1.7314 -1.6872 34 1 1.0589 4.3837 -4.1411 35 1 3.8034 2.4629 0.2645 36 1 4.0125 0.7782 -0.2706 37 1 3.3937 2.9068 2.9232 38 1 6.1603 -1.6329 3.8509 39 1 5.4117 -3.0984 4.5292 40 1 4.9880 -2.5616 2.8858 41 1 1.9649 -1.5875 4.3626 42 1 2.8664 -2.9709 3.6957 43 1 3.4403 -3.7903 5.9122 44 1 1.7311 -3.2642 6.0823 45 1 5.5124 -1.2303 6.1091 46 1 4.4712 0.2074 5.8913 47 1 3.8910 -1.1379 1.6149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332394665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:25 Heat of formation + Delta-G solvation = 26.755022 kcal Electronic energy + Delta-G solvation = -28415.402359 eV Core-core repulsion = 24535.094151 eV Total energy + Delta-G solvation = -3880.308208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.40528 -38.16186 -37.39327 -36.70720 -36.37203 -32.64214 -32.12485 -31.05251 -30.42865 -29.45388 -28.31143 -26.69401 -25.24837 -24.26828 -22.64647 -22.10127 -20.36671 -19.82845 -19.43186 -19.18253 -17.63671 -16.89968 -16.53837 -16.41216 -16.04274 -15.15697 -14.82160 -14.81002 -14.66778 -14.40771 -14.06907 -13.76556 -13.66800 -13.43877 -13.23598 -12.95284 -12.90285 -12.69378 -12.50800 -12.41883 -12.40226 -12.25023 -12.07104 -11.72915 -11.56962 -11.34449 -11.20365 -11.12892 -10.88216 -10.77627 -10.71446 -10.52068 -10.26250 -10.24088 -9.67240 -9.27515 -9.19197 -8.39850 -8.20028 -7.16598 -5.99119 -3.99543 -0.42411 1.91028 2.01757 2.32212 3.05047 3.09122 3.33528 3.41350 3.46346 3.55399 3.65372 3.84144 3.98093 4.18338 4.32075 4.46515 4.74076 4.86423 4.90716 4.93247 5.02091 5.04051 5.10983 5.17021 5.27462 5.37433 5.49377 5.52163 5.63731 5.71969 5.80201 5.94183 6.07909 6.16502 6.32807 6.43655 6.54924 6.66456 6.84572 6.85958 7.07939 7.29434 7.37478 7.84410 7.87421 8.17254 8.27891 8.59869 9.08837 9.64569 11.11560 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.002584 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.966850 B =10832.874953 C =11198.123372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 N -0.530 5.530 4 C 0.191 3.809 5 C -0.500 4.500 6 H 0.064 0.936 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.135 3.865 14 C -0.199 4.199 15 C 0.077 3.923 16 N -0.306 5.306 17 N -0.378 5.378 18 C 0.210 3.790 19 C -0.164 4.164 20 C -0.138 4.138 21 C -0.577 4.577 22 S 2.385 3.615 23 O -0.936 6.936 24 O -0.917 6.917 25 C -0.596 4.596 26 C 0.048 3.952 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.017 0.983 31 H 0.057 0.943 32 H -0.013 1.013 33 H 0.036 0.964 34 H 0.259 0.741 35 H 0.089 0.911 36 H 0.023 0.977 37 H 0.185 0.815 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.167 0.833 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.502 -17.400 16.132 24.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 N -0.255 5.255 4 C 0.066 3.934 5 C -0.539 4.539 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.006 3.994 14 C -0.210 4.210 15 C -0.110 4.110 16 N -0.126 5.126 17 N -0.163 5.163 18 C 0.124 3.876 19 C -0.222 4.222 20 C -0.178 4.178 21 C -0.706 4.706 22 S 2.567 3.433 23 O -0.933 6.933 24 O -0.914 6.914 25 C -0.725 4.725 26 C -0.096 4.096 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.005 0.995 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.041 0.959 37 H 0.202 0.798 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.165 0.835 46 H 0.185 0.815 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.016 -16.941 18.586 26.109 hybrid contribution 0.580 0.334 -2.524 2.611 sum 7.596 -16.607 16.063 24.321 Atomic orbital electron populations 1.21734 0.95775 0.99638 1.02887 1.21992 0.95826 0.91320 0.98610 1.62140 1.15312 1.14034 1.33994 1.19789 0.96392 0.94281 0.82958 1.21218 1.45668 0.90668 0.96313 0.91785 1.24983 0.95598 0.98879 0.95260 1.69962 1.48026 1.35077 1.01065 0.86481 0.77502 0.85517 0.78150 1.19591 1.21250 1.21147 1.20285 0.89939 1.01256 0.87963 1.20312 1.11418 0.91776 0.97497 1.23855 0.97488 1.00356 0.89296 1.77126 1.24962 0.86760 1.23729 1.48503 1.57913 1.05661 1.04186 1.20401 0.95705 0.83315 0.88167 1.22455 0.97465 0.99793 1.02498 1.22616 0.98117 0.99648 0.97402 1.30568 1.13160 1.16081 1.10824 1.09331 0.77828 0.78649 0.77491 1.93621 1.75125 1.77944 1.46620 1.93685 1.52093 1.60679 1.84952 1.30773 1.17332 1.16160 1.08198 1.22144 1.03599 0.99459 0.84444 0.92522 0.92043 0.93992 0.96461 0.92458 0.99498 0.94583 0.93090 0.89232 0.95873 0.79778 0.90590 0.89807 0.90620 0.88037 0.87301 0.84089 0.83855 0.83486 0.81512 0.81727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.98 37.16 0.37 -2.05 16 2 C 0.05 0.89 5.55 -3.82 -0.02 0.87 16 3 N -0.53 -10.91 4.37 -237.52 -1.04 -11.95 16 4 C 0.19 4.80 4.59 -4.98 -0.02 4.77 16 5 C -0.50 -13.69 8.61 -34.44 -0.30 -13.98 16 6 H 0.06 1.74 7.66 -52.49 -0.40 1.34 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 8 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.13 2.43 5.27 -4.98 -0.03 2.40 16 14 C -0.20 -3.03 5.04 -105.05 -0.53 -3.56 16 15 C 0.08 1.17 11.96 -17.36 -0.21 0.97 16 16 N -0.31 -4.44 10.81 30.63 0.33 -4.11 16 17 N -0.38 -4.40 3.34 -48.37 -0.16 -4.56 16 18 C 0.21 1.62 1.08 -131.51 -0.14 1.48 16 19 C -0.16 -0.85 7.76 37.16 0.29 -0.56 16 20 C -0.14 -0.87 5.36 -25.64 -0.14 -1.01 16 21 C -0.58 -2.59 7.46 38.26 0.29 -2.31 16 22 S 2.39 19.27 6.05 -107.50 -0.65 18.62 16 23 O -0.94 -9.97 18.16 -57.69 -1.05 -11.02 16 24 O -0.92 -11.66 18.16 -57.69 -1.05 -12.71 16 25 C -0.60 -4.44 6.61 37.48 0.25 -4.19 16 26 C 0.05 0.59 8.76 -17.22 -0.15 0.44 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 1.17 6.52 -51.93 -0.34 0.83 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.30 8.05 -51.93 -0.42 -0.12 16 31 H 0.06 0.87 5.50 -51.93 -0.29 0.58 16 32 H -0.01 -0.34 8.00 -51.93 -0.42 -0.76 16 33 H 0.04 0.98 6.24 -51.93 -0.32 0.65 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.09 1.76 7.32 -51.93 -0.38 1.38 16 36 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 37 H 0.19 2.65 8.06 -52.49 -0.42 2.23 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.07 0.35 7.26 -51.93 -0.38 -0.03 16 41 H 0.10 0.85 8.04 -51.93 -0.42 0.43 16 42 H 0.11 0.47 7.76 -51.93 -0.40 0.07 16 43 H 0.14 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.15 0.68 7.63 -51.93 -0.40 0.28 16 46 H 0.17 1.61 6.45 -51.93 -0.33 1.27 16 47 H 0.17 1.59 7.43 -52.49 -0.39 1.20 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -36.76 385.72 -9.92 -46.69 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -7.40 Total: -2.17 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -0.44 Total: -15.33 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.13 Total: -46.34 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -2.10 Total: -23.73 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 19.27 SS G_CDS: -0.65 Total: 18.62 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.76 -9.92 -46.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332394665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.443 kcal (2) G-P(sol) polarization free energy of solvation -36.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds