Wall clock time and date at job start Wed Apr 1 2020 01:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.46843 * 2 1 4 4 C 1.46893 * 111.00346 * 288.04314 * 3 2 1 5 5 C 1.50698 * 109.47410 * 160.36173 * 4 3 2 6 6 H 1.07998 * 119.99745 * 4.65114 * 5 4 3 7 7 C 1.37878 * 119.99956 * 184.65933 * 5 4 3 8 8 N 1.31510 * 120.00188 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99786 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47337 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47592 * 119.99786 * 9 7 5 12 12 H 1.48504 * 109.47134 * 239.99824 * 9 7 5 13 13 C 1.46896 * 110.99748 * 164.08514 * 3 2 1 14 14 C 1.50702 * 109.47572 * 293.95779 * 13 3 2 15 15 C 1.39876 * 126.03710 * 270.00374 * 14 13 3 16 16 N 1.30840 * 108.20067 * 179.97438 * 15 14 13 17 17 N 1.40085 * 108.20315 * 359.97438 * 16 15 14 18 18 C 1.46504 * 126.03227 * 180.26231 * 17 16 15 19 19 C 1.53004 * 108.89759 * 226.00415 * 18 17 16 20 20 C 1.52969 * 108.93200 * 107.45381 * 18 17 16 21 21 C 1.55094 * 108.66749 * 209.32990 * 20 18 17 22 22 S 1.83845 * 101.18654 * 41.87376 * 21 20 18 23 23 O 1.42097 * 109.61290 * 211.04633 * 22 21 20 24 24 O 1.42105 * 109.78252 * 77.13636 * 22 21 20 25 25 C 1.53615 * 108.93271 * 344.68815 * 18 17 16 26 26 C 1.34948 * 107.93005 * 359.97438 * 17 16 15 27 27 H 1.08999 * 109.47209 * 299.46295 * 1 2 3 28 28 H 1.08994 * 109.47632 * 59.46696 * 1 2 3 29 29 H 1.09007 * 109.46968 * 179.46952 * 1 2 3 30 30 H 1.09004 * 109.47132 * 240.00614 * 2 1 3 31 31 H 1.08993 * 109.47455 * 120.00102 * 2 1 3 32 32 H 1.09005 * 109.46956 * 280.35875 * 4 3 2 33 33 H 1.08997 * 109.47494 * 40.35451 * 4 3 2 34 34 H 0.96998 * 120.00522 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.47232 * 173.95318 * 13 3 2 36 36 H 1.08996 * 109.47292 * 53.95626 * 13 3 2 37 37 H 1.07995 * 125.89612 * 359.97286 * 15 14 13 38 38 H 1.09004 * 109.47037 * 60.70423 * 19 18 17 39 39 H 1.08999 * 109.47280 * 180.69896 * 19 18 17 40 40 H 1.09000 * 109.47192 * 300.70774 * 19 18 17 41 41 H 1.09003 * 109.65399 * 329.17804 * 20 18 17 42 42 H 1.09003 * 109.65333 * 89.49100 * 20 18 17 43 43 H 1.08999 * 111.08240 * 283.89876 * 21 20 18 44 44 H 1.09000 * 111.07973 * 159.85061 * 21 20 18 45 45 H 1.09004 * 110.26975 * 242.06815 * 25 18 17 46 46 H 1.08999 * 110.27069 * 4.04471 * 25 18 17 47 47 H 1.07995 * 126.12597 * 180.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7946 2.0230 -1.3039 5 6 1.8460 3.5208 -1.1459 6 1 2.1017 3.9545 -0.1905 7 6 1.5664 4.3374 -2.2211 8 7 1.2553 3.8093 -3.3846 9 14 1.6308 6.1940 -2.0254 10 1 2.0030 6.5319 -0.6280 11 1 2.6420 6.7552 -2.9570 12 1 0.2980 6.7710 -2.3355 13 6 3.4385 1.4418 0.3761 14 6 3.5960 1.0058 1.8100 15 6 3.5491 1.8382 2.9331 16 7 3.7259 1.0984 3.9977 17 7 3.8906 -0.2301 3.5851 18 6 4.1093 -1.3838 4.4611 19 6 5.2493 -2.2301 3.8908 20 6 2.8354 -2.2301 4.4947 21 6 2.7515 -2.9467 5.8675 22 16 3.2787 -1.6018 7.0047 23 8 3.9440 -2.1611 8.1289 24 8 2.2096 -0.6848 7.1935 25 6 4.5112 -0.8813 5.8560 26 6 3.8059 -0.2604 2.2386 27 1 -0.3633 0.5055 0.8947 28 1 -0.3634 0.5220 -0.8851 29 1 -0.3633 -1.0277 -0.0095 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.5684 1.7046 -2.0025 33 1 0.8168 1.7314 -1.6872 34 1 1.0589 4.3837 -4.1411 35 1 3.8034 2.4629 0.2645 36 1 4.0125 0.7782 -0.2706 37 1 3.3937 2.9068 2.9232 38 1 6.1603 -1.6329 3.8509 39 1 5.4117 -3.0984 4.5292 40 1 4.9880 -2.5616 2.8858 41 1 1.9649 -1.5875 4.3626 42 1 2.8664 -2.9709 3.6957 43 1 3.4403 -3.7903 5.9122 44 1 1.7311 -3.2642 6.0823 45 1 5.5124 -1.2303 6.1091 46 1 4.4712 0.2074 5.8913 47 1 3.8910 -1.1379 1.6149 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332394665.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:24 Heat of formation + Delta-G solvation = -1.348149 kcal Electronic energy + Delta-G solvation = -28416.621004 eV Core-core repulsion = 24535.094151 eV Total energy + Delta-G solvation = -3881.526853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.39449 -38.98722 -38.23341 -38.03382 -37.11537 -34.72259 -32.93737 -32.21009 -31.40495 -30.77619 -28.91441 -28.36520 -26.15084 -25.34206 -24.39483 -23.04628 -21.76578 -20.89947 -20.39288 -19.89119 -18.52666 -18.38279 -17.48424 -17.25143 -16.79629 -16.68968 -16.27886 -15.75063 -15.63929 -15.46667 -15.31872 -15.13311 -14.58864 -14.31667 -14.12268 -14.03543 -13.80674 -13.63658 -13.42303 -13.29227 -13.25895 -13.16950 -12.97328 -12.88885 -12.83293 -12.75659 -12.61828 -12.45727 -12.17209 -12.11703 -12.02937 -11.79596 -11.46721 -11.37091 -11.26470 -11.19521 -10.54441 -10.28180 -9.33356 -8.81938 -8.14126 -6.22455 -1.01513 0.94213 1.36011 1.42126 1.43683 1.56641 1.57369 1.87138 2.44521 2.50310 2.95919 3.08016 3.17704 3.31470 3.49424 3.59005 3.63916 3.94662 3.94981 4.02977 4.26772 4.31519 4.34625 4.48264 4.52389 4.58604 4.64549 4.70449 4.75343 4.78712 4.82948 4.88711 4.96960 5.00716 5.07047 5.13860 5.19883 5.23665 5.36000 5.39673 5.46354 5.70504 5.75477 6.16074 6.17905 6.53283 6.75738 6.79898 6.94640 7.46719 8.96160 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.002584 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.966850 B =10832.874953 C =11198.123372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 N -0.541 5.541 4 C 0.207 3.793 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.144 3.856 14 C -0.227 4.227 15 C 0.056 3.944 16 N -0.325 5.325 17 N -0.366 5.366 18 C 0.195 3.805 19 C -0.165 4.165 20 C -0.142 4.142 21 C -0.538 4.538 22 S 2.377 3.623 23 O -0.969 6.969 24 O -0.978 6.978 25 C -0.593 4.593 26 C 0.072 3.928 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.078 0.922 30 H 0.019 0.981 31 H 0.088 0.912 32 H -0.039 1.039 33 H 0.011 0.989 34 H 0.262 0.738 35 H 0.061 0.939 36 H 0.030 0.970 37 H 0.177 0.823 38 H 0.066 0.934 39 H 0.121 0.879 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.145 0.855 43 H 0.185 0.815 44 H 0.162 0.838 45 H 0.176 0.824 46 H 0.141 0.859 47 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.409 -20.663 16.764 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 N -0.266 5.266 4 C 0.081 3.919 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.196 4.196 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.207 1.207 13 C 0.015 3.985 14 C -0.239 4.239 15 C -0.130 4.130 16 N -0.146 5.146 17 N -0.149 5.149 18 C 0.112 3.888 19 C -0.223 4.223 20 C -0.182 4.182 21 C -0.671 4.671 22 S 2.564 3.436 23 O -0.966 6.966 24 O -0.975 6.975 25 C -0.723 4.723 26 C -0.074 4.074 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.097 0.903 30 H 0.037 0.963 31 H 0.106 0.894 32 H -0.021 1.021 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.194 0.806 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.163 0.837 43 H 0.202 0.798 44 H 0.180 0.820 45 H 0.194 0.806 46 H 0.159 0.841 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.936 -20.186 19.299 29.033 hybrid contribution 0.336 1.196 -2.680 2.954 sum 8.272 -18.989 16.619 26.556 Atomic orbital electron populations 1.21704 0.95569 1.01410 1.00892 1.22097 0.95999 0.89542 1.00045 1.62061 1.17378 1.16261 1.30902 1.19404 0.94057 0.93706 0.84731 1.21523 1.45272 0.92167 0.96131 0.92245 1.25824 0.95214 1.03631 0.94918 1.70076 1.49002 1.36797 1.01843 0.85439 0.77608 0.79805 0.78399 1.18902 1.20497 1.20748 1.20075 0.88287 0.99988 0.90142 1.20023 1.14870 0.93360 0.95660 1.23860 0.98627 1.00583 0.89916 1.77119 1.25453 0.88381 1.23664 1.48875 1.55735 1.05643 1.04643 1.21003 0.97942 0.82383 0.87497 1.22575 0.95494 1.00251 1.03994 1.22711 0.96121 0.99936 0.99393 1.30432 1.15304 1.14509 1.06902 1.09292 0.76983 0.79230 0.78060 1.93572 1.75568 1.78276 1.49181 1.93610 1.54003 1.63523 1.86352 1.30724 1.18713 1.14670 1.08172 1.22505 1.00765 0.99287 0.84876 0.93313 0.95162 0.90302 0.96254 0.89369 1.02110 0.97057 0.92890 0.92091 0.95158 0.80569 0.91487 0.86087 0.89206 0.90334 0.83661 0.79783 0.81965 0.80597 0.84055 0.78039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 9.98 71.98 0.72 -3.85 16 2 C 0.05 1.71 5.55 86.30 0.48 2.19 16 3 N -0.54 -22.68 4.37 -905.39 -3.96 -26.64 16 4 C 0.21 10.86 4.59 85.56 0.39 11.25 16 5 C -0.51 -29.04 8.61 25.60 0.22 -28.82 16 6 H 0.06 3.35 7.66 -2.91 -0.02 3.32 16 7 C 0.00 0.09 5.46 84.66 0.46 0.55 16 8 N -0.94 -56.37 13.29 21.45 0.28 -56.09 16 9 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 10 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.14 5.27 5.27 85.56 0.45 5.72 16 14 C -0.23 -6.83 5.04 -20.14 -0.10 -6.94 16 15 C 0.06 1.76 11.96 85.24 1.02 2.77 16 16 N -0.33 -9.46 10.81 -57.02 -0.62 -10.07 16 17 N -0.37 -7.68 3.34 -306.94 -1.02 -8.71 16 18 C 0.20 2.31 1.08 3.80 0.00 2.31 16 19 C -0.17 -0.81 7.76 71.98 0.56 -0.25 16 20 C -0.14 -1.11 5.36 31.30 0.17 -0.94 16 21 C -0.54 -2.22 7.46 72.70 0.54 -1.68 16 22 S 2.38 35.47 6.05 -56.49 -0.34 35.13 16 23 O -0.97 -19.69 18.16 -127.50 -2.32 -22.00 16 24 O -0.98 -25.70 18.16 -127.50 -2.32 -28.01 16 25 C -0.59 -7.75 6.61 72.19 0.48 -7.28 16 26 C 0.07 1.57 8.76 83.54 0.73 2.30 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.03 1.17 6.52 -2.39 -0.02 1.15 16 29 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.02 0.65 8.05 -2.39 -0.02 0.63 16 31 H 0.09 2.39 5.50 -2.39 -0.01 2.38 16 32 H -0.04 -2.18 8.00 -2.38 -0.02 -2.20 16 33 H 0.01 0.65 6.24 -2.39 -0.01 0.63 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.06 2.53 7.32 -2.38 -0.02 2.52 16 36 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 37 H 0.18 5.53 8.06 -2.91 -0.02 5.51 16 38 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 39 H 0.12 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.09 0.24 7.26 -2.39 -0.02 0.23 16 41 H 0.08 1.07 8.04 -2.39 -0.02 1.05 16 42 H 0.15 0.21 7.76 -2.39 -0.02 0.19 16 43 H 0.18 -0.68 8.14 -2.39 -0.02 -0.70 16 44 H 0.16 0.28 8.14 -2.39 -0.02 0.26 16 45 H 0.18 1.13 7.63 -2.39 -0.02 1.12 16 46 H 0.14 2.75 6.45 -2.39 -0.02 2.73 16 47 H 0.20 2.81 7.43 -2.91 -0.02 2.79 16 Total: -1.00 -85.80 385.72 -1.18 -86.97 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 0.96 Total: 5.16 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 6.12 Total: -22.65 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -5.31 Total: -101.51 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -4.63 Total: -50.01 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 35.47 SS G_CDS: -0.34 Total: 35.13 kcal Total: -85.80 -1.18 -86.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332394665.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.626 kcal (2) G-P(sol) polarization free energy of solvation -85.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds