Wall clock time and date at job start Wed Apr 1 2020 01:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47078 * 2 1 4 4 C 1.46502 * 119.99614 * 275.00279 * 3 2 1 5 5 C 1.50706 * 109.46579 * 274.99598 * 4 3 2 6 6 H 1.07998 * 120.00155 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99583 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99957 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99859 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46999 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47013 * 119.99705 * 9 7 5 12 12 H 1.48494 * 109.47056 * 239.99946 * 9 7 5 13 13 S 1.65600 * 120.00098 * 94.99809 * 3 2 1 14 14 O 1.42098 * 106.40186 * 336.46240 * 13 3 2 15 15 O 1.42097 * 106.40231 * 203.54068 * 13 3 2 16 16 N 1.65600 * 107.21529 * 90.00097 * 13 3 2 17 17 C 1.46502 * 119.99828 * 90.00053 * 16 13 3 18 18 C 1.50701 * 109.46961 * 93.80741 * 17 16 13 19 19 C 1.38670 * 120.41692 * 278.25078 * 18 17 16 20 20 C 1.38627 * 118.42602 * 180.24355 * 19 18 17 21 21 C 1.38230 * 119.15631 * 359.75466 * 20 19 18 22 22 N 1.31858 * 120.76178 * 359.97438 * 21 20 19 23 23 C 1.31884 * 121.72776 * 0.02562 * 22 21 20 24 24 C 1.46504 * 119.99815 * 269.99791 * 16 13 3 25 25 C 1.53001 * 109.46840 * 126.62479 * 24 16 13 26 26 C 1.53003 * 109.46929 * 246.62281 * 24 16 13 27 27 H 1.09001 * 109.47617 * 300.00040 * 1 2 3 28 28 H 1.09001 * 109.47277 * 59.99736 * 1 2 3 29 29 H 1.09000 * 109.47260 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46805 * 240.00217 * 2 1 3 31 31 H 1.08996 * 109.47167 * 119.99793 * 2 1 3 32 32 H 1.08999 * 109.47527 * 34.99462 * 4 3 2 33 33 H 1.09004 * 109.46845 * 155.00312 * 4 3 2 34 34 H 0.97007 * 120.00106 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47036 * 333.80107 * 17 16 13 36 36 H 1.08997 * 109.46893 * 213.80208 * 17 16 13 37 37 H 1.08011 * 120.78991 * 359.97285 * 19 18 17 38 38 H 1.07996 * 120.42687 * 179.73352 * 20 19 18 39 39 H 1.07999 * 119.61996 * 180.02562 * 21 20 19 40 40 H 1.07995 * 119.61788 * 179.97438 * 23 22 21 41 41 H 1.08994 * 109.47105 * 6.62597 * 24 16 13 42 42 H 1.09003 * 109.47358 * 59.99996 * 25 24 16 43 43 H 1.08998 * 109.46966 * 180.02562 * 25 24 16 44 44 H 1.08994 * 109.47001 * 300.00114 * 25 24 16 45 45 H 1.09001 * 109.47008 * 50.60219 * 26 24 16 46 46 H 1.08998 * 109.47087 * 170.59902 * 26 24 16 47 47 H 1.09000 * 109.47067 * 290.60026 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1087 -1.2640 5 6 3.4948 1.7888 -1.8823 6 1 4.1720 1.1111 -1.3839 7 6 3.8529 2.3613 -3.0844 8 7 3.0279 3.1861 -3.6916 9 14 5.5093 1.9643 -3.8513 10 1 6.2447 1.0155 -2.9772 11 1 5.3016 1.3475 -5.1861 12 1 6.2978 3.2137 -4.0005 13 16 2.4121 2.1203 1.4287 14 8 1.6868 1.4416 2.4448 15 8 2.3056 3.5187 1.1998 16 7 4.0144 1.8138 1.7137 17 6 5.0372 2.7326 1.2078 18 6 5.3832 3.7369 2.2767 19 6 4.5839 4.8522 2.4773 20 6 4.9435 5.7521 3.4686 21 6 6.0760 5.5068 4.2222 22 7 6.8096 4.4325 4.0072 23 6 6.4977 3.5553 3.0731 24 6 4.4089 0.6239 2.4718 25 6 5.4327 -0.1780 1.6657 26 6 5.0294 1.0503 3.8037 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3617 1.8097 -1.9454 33 1 2.0921 3.1803 -1.0756 34 1 3.2797 3.5887 -4.5375 35 1 4.6554 3.2534 0.3297 36 1 5.9297 2.1689 0.9364 37 1 3.7045 5.0182 1.8726 38 1 4.3467 6.6338 3.6495 39 1 6.3629 6.2027 4.9967 40 1 7.1231 2.6872 2.9258 41 1 3.5312 0.0061 2.6611 42 1 6.3106 0.4398 1.4763 43 1 5.7260 -1.0636 2.2295 44 1 4.9907 -0.4817 0.7169 45 1 4.3669 1.7571 4.3034 46 1 5.1695 0.1739 4.4365 47 1 5.9939 1.5238 3.6202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336907897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:24 Heat of formation + Delta-G solvation = -41.722308 kcal Electronic energy + Delta-G solvation = -30315.931864 eV Core-core repulsion = 26432.654256 eV Total energy + Delta-G solvation = -3883.277608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.12110 -37.37223 -36.78593 -36.05937 -35.26455 -33.03208 -32.76115 -31.66717 -30.52187 -29.96293 -27.13951 -26.68479 -25.92097 -23.38168 -23.17225 -22.15106 -21.75511 -20.64215 -18.44809 -17.43490 -17.06156 -16.92934 -16.39361 -16.07737 -15.70634 -15.15112 -15.03914 -14.40645 -14.09295 -13.85515 -13.81860 -13.60413 -13.38159 -13.18408 -12.97827 -12.79379 -12.38033 -12.34659 -12.11392 -12.00726 -11.84619 -11.72982 -11.59890 -11.40004 -11.36702 -11.14583 -11.10251 -10.98766 -10.94842 -10.68165 -10.55272 -10.41036 -10.07221 -9.80721 -9.61004 -9.40965 -8.87752 -8.75589 -8.54893 -8.08106 -6.16625 -4.23404 1.05471 1.33364 1.49063 3.19554 3.28484 3.29560 3.40842 3.93158 4.10168 4.31135 4.51298 4.81666 4.83524 4.95838 5.06344 5.14382 5.18496 5.24812 5.29252 5.34614 5.37974 5.47451 5.65317 5.68656 5.71898 5.77490 5.82058 5.84348 5.87220 5.99474 6.05772 6.11089 6.24581 6.27443 6.39911 6.40030 6.46014 6.55203 6.62597 6.65440 6.85711 6.93004 7.31469 7.40644 7.60772 7.80898 8.05762 8.10198 8.82588 9.43126 10.91197 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.005691 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.325256 B = 4918.640064 C = 5989.247177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.991 5.991 4 C 0.245 3.755 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.890 3.110 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.781 3.219 14 O -0.997 6.997 15 O -0.977 6.977 16 N -0.992 5.992 17 C 0.167 3.833 18 C -0.150 4.150 19 C -0.063 4.063 20 C -0.177 4.177 21 C 0.090 3.910 22 N -0.493 5.493 23 C 0.108 3.892 24 C 0.145 3.855 25 C -0.162 4.162 26 C -0.164 4.164 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.264 0.736 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.159 0.841 38 H 0.132 0.868 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 -3.124 11.489 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.832 5.832 4 C 0.123 3.877 5 C -0.578 4.578 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.718 3.282 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.792 3.208 14 O -0.981 6.981 15 O -0.961 6.961 16 N -0.829 5.829 17 C 0.041 3.959 18 C -0.153 4.153 19 C -0.089 4.089 20 C -0.197 4.197 21 C -0.067 4.067 22 N -0.202 5.202 23 C -0.049 4.049 24 C 0.038 3.962 25 C -0.220 4.220 26 C -0.223 4.223 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.177 0.823 38 H 0.150 0.850 39 H 0.167 0.833 40 H 0.170 0.830 41 H 0.109 0.891 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.708 -2.653 12.365 13.179 hybrid contribution 0.403 -0.205 -1.381 1.453 sum 4.111 -2.857 10.985 12.072 Atomic orbital electron populations 1.22209 0.96950 1.01420 1.02367 1.20972 0.93646 0.82976 1.02017 1.57767 1.78357 1.22881 1.24195 1.19204 0.97380 0.92165 0.79000 1.21590 1.02176 1.27950 1.06062 0.91735 1.24948 0.97117 0.94842 0.96887 1.69941 1.35862 1.29810 1.17031 0.86577 0.84011 0.78291 0.79362 1.19589 1.21010 1.20886 1.01885 0.72631 0.73485 0.72825 1.93529 1.70490 1.76413 1.57701 1.93499 1.85753 1.30847 1.86045 1.58155 1.24769 1.32566 1.67368 1.20096 0.93386 0.88721 0.93711 1.21449 0.96707 0.97467 0.99713 1.22177 0.99045 0.92044 0.95656 1.22183 0.98873 1.00993 0.97661 1.22685 0.91584 0.94488 0.97971 1.67664 1.31110 1.03220 1.18186 1.22610 0.94715 0.96833 0.90743 1.20782 0.98817 0.85704 0.90854 1.22156 0.99434 0.99608 1.00843 1.22373 1.01691 1.01574 0.96657 0.92729 0.92045 0.92316 0.90171 0.92121 0.94471 0.93212 0.92637 0.87207 0.89332 0.82325 0.84995 0.83253 0.83020 0.89073 0.92035 0.91963 0.91397 0.92733 0.92071 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.13 2.18 6.06 -4.04 -0.02 2.15 16 3 N -0.99 -19.37 2.82 -115.66 -0.33 -19.69 16 4 C 0.24 5.71 5.44 -5.19 -0.03 5.68 16 5 C -0.54 -13.09 9.36 -34.44 -0.32 -13.42 16 6 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -24.36 13.29 55.43 0.74 -23.62 16 9 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 S 2.78 52.96 5.99 -107.50 -0.64 52.32 16 14 O -1.00 -19.87 15.75 -57.17 -0.90 -20.77 16 15 O -0.98 -20.76 13.13 -57.17 -0.75 -21.51 16 16 N -0.99 -15.81 2.78 -108.57 -0.30 -16.11 16 17 C 0.17 2.61 5.24 -5.19 -0.03 2.59 16 18 C -0.15 -2.25 4.81 -104.48 -0.50 -2.75 16 19 C -0.06 -0.98 9.46 -39.28 -0.37 -1.35 16 20 C -0.18 -2.34 10.11 -39.44 -0.40 -2.74 16 21 C 0.09 1.14 11.18 -17.54 -0.20 0.94 16 22 N -0.49 -6.99 10.36 -13.25 -0.14 -7.13 16 23 C 0.11 1.48 8.55 -17.55 -0.15 1.33 16 24 C 0.14 1.93 3.18 -67.93 -0.22 1.72 16 25 C -0.16 -1.88 9.00 37.16 0.33 -1.54 16 26 C -0.16 -2.00 8.27 37.16 0.31 -1.69 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 31 H 0.06 0.90 7.61 -51.93 -0.40 0.51 16 32 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 33 H 0.05 1.28 6.91 -51.93 -0.36 0.92 16 34 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 35 H 0.11 2.00 7.63 -51.93 -0.40 1.60 16 36 H 0.09 1.21 6.04 -51.93 -0.31 0.89 16 37 H 0.16 2.75 5.88 -52.48 -0.31 2.44 16 38 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.15 1.75 6.88 -52.49 -0.36 1.38 16 41 H 0.09 1.25 7.04 -51.93 -0.37 0.88 16 42 H 0.06 0.68 6.53 -51.93 -0.34 0.34 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 0.76 4.46 -51.93 -0.23 0.53 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -29.87 385.79 -10.11 -39.97 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.26 Total: 5.74 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -1.31 Total: -9.75 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -0.03 Total: -66.55 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -1.65 Total: -42.29 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 52.96 SS G_CDS: -0.64 Total: 52.32 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.87 -10.11 -39.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336907897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.748 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds