Wall clock time and date at job start Wed Apr 1 2020 01:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47078 * 2 1 4 4 C 1.46502 * 119.99614 * 275.00279 * 3 2 1 5 5 C 1.50706 * 109.46579 * 274.99598 * 4 3 2 6 6 H 1.07998 * 120.00155 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99583 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99957 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99859 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46999 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47013 * 119.99705 * 9 7 5 12 12 H 1.48494 * 109.47056 * 239.99946 * 9 7 5 13 13 S 1.65600 * 120.00098 * 94.99809 * 3 2 1 14 14 O 1.42098 * 106.40186 * 336.46240 * 13 3 2 15 15 O 1.42097 * 106.40231 * 203.54068 * 13 3 2 16 16 N 1.65600 * 107.21529 * 90.00097 * 13 3 2 17 17 C 1.46502 * 119.99828 * 90.00053 * 16 13 3 18 18 C 1.50701 * 109.46961 * 93.80741 * 17 16 13 19 19 C 1.38670 * 120.41692 * 278.25078 * 18 17 16 20 20 C 1.38627 * 118.42602 * 180.24355 * 19 18 17 21 21 C 1.38230 * 119.15631 * 359.75466 * 20 19 18 22 22 N 1.31858 * 120.76178 * 359.97438 * 21 20 19 23 23 C 1.31884 * 121.72776 * 0.02562 * 22 21 20 24 24 C 1.46504 * 119.99815 * 269.99791 * 16 13 3 25 25 C 1.53001 * 109.46840 * 126.62479 * 24 16 13 26 26 C 1.53003 * 109.46929 * 246.62281 * 24 16 13 27 27 H 1.09001 * 109.47617 * 300.00040 * 1 2 3 28 28 H 1.09001 * 109.47277 * 59.99736 * 1 2 3 29 29 H 1.09000 * 109.47260 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46805 * 240.00217 * 2 1 3 31 31 H 1.08996 * 109.47167 * 119.99793 * 2 1 3 32 32 H 1.08999 * 109.47527 * 34.99462 * 4 3 2 33 33 H 1.09004 * 109.46845 * 155.00312 * 4 3 2 34 34 H 0.97007 * 120.00106 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47036 * 333.80107 * 17 16 13 36 36 H 1.08997 * 109.46893 * 213.80208 * 17 16 13 37 37 H 1.08011 * 120.78991 * 359.97285 * 19 18 17 38 38 H 1.07996 * 120.42687 * 179.73352 * 20 19 18 39 39 H 1.07999 * 119.61996 * 180.02562 * 21 20 19 40 40 H 1.07995 * 119.61788 * 179.97438 * 23 22 21 41 41 H 1.08994 * 109.47105 * 6.62597 * 24 16 13 42 42 H 1.09003 * 109.47358 * 59.99996 * 25 24 16 43 43 H 1.08998 * 109.46966 * 180.02562 * 25 24 16 44 44 H 1.08994 * 109.47001 * 300.00114 * 25 24 16 45 45 H 1.09001 * 109.47008 * 50.60219 * 26 24 16 46 46 H 1.08998 * 109.47087 * 170.59902 * 26 24 16 47 47 H 1.09000 * 109.47067 * 290.60026 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1087 -1.2640 5 6 3.4948 1.7888 -1.8823 6 1 4.1720 1.1111 -1.3839 7 6 3.8529 2.3613 -3.0844 8 7 3.0279 3.1861 -3.6916 9 14 5.5093 1.9643 -3.8513 10 1 6.2447 1.0155 -2.9772 11 1 5.3016 1.3475 -5.1861 12 1 6.2978 3.2137 -4.0005 13 16 2.4121 2.1203 1.4287 14 8 1.6868 1.4416 2.4448 15 8 2.3056 3.5187 1.1998 16 7 4.0144 1.8138 1.7137 17 6 5.0372 2.7326 1.2078 18 6 5.3832 3.7369 2.2767 19 6 4.5839 4.8522 2.4773 20 6 4.9435 5.7521 3.4686 21 6 6.0760 5.5068 4.2222 22 7 6.8096 4.4325 4.0072 23 6 6.4977 3.5553 3.0731 24 6 4.4089 0.6239 2.4718 25 6 5.4327 -0.1780 1.6657 26 6 5.0294 1.0503 3.8037 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.3617 1.8097 -1.9454 33 1 2.0921 3.1803 -1.0756 34 1 3.2797 3.5887 -4.5375 35 1 4.6554 3.2534 0.3297 36 1 5.9297 2.1689 0.9364 37 1 3.7045 5.0182 1.8726 38 1 4.3467 6.6338 3.6495 39 1 6.3629 6.2027 4.9967 40 1 7.1231 2.6872 2.9258 41 1 3.5312 0.0061 2.6611 42 1 6.3106 0.4398 1.4763 43 1 5.7260 -1.0636 2.2295 44 1 4.9907 -0.4817 0.7169 45 1 4.3669 1.7571 4.3034 46 1 5.1695 0.1739 4.4365 47 1 5.9939 1.5238 3.6202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336907897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:23 Heat of formation + Delta-G solvation = -60.265216 kcal Electronic energy + Delta-G solvation = -30316.735945 eV Core-core repulsion = 26432.654256 eV Total energy + Delta-G solvation = -3884.081689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20427 -38.56427 -38.31853 -37.65473 -36.86746 -34.66175 -34.12696 -32.73731 -31.70186 -31.47003 -28.47594 -28.08533 -27.09572 -24.90752 -24.46531 -23.33008 -23.19872 -21.82968 -19.81763 -18.86744 -18.63946 -18.22029 -18.07681 -17.31065 -17.11299 -16.51747 -16.27269 -15.98559 -15.38154 -15.15500 -14.93073 -14.77317 -14.73225 -14.51935 -14.24121 -13.99697 -13.83549 -13.69109 -13.59042 -13.45616 -13.27787 -13.02615 -12.98327 -12.78253 -12.74201 -12.65978 -12.53972 -12.33003 -12.21037 -12.10816 -12.05671 -11.80358 -11.61654 -11.53159 -10.74170 -10.57452 -10.50793 -10.03971 -9.90867 -9.68912 -8.13376 -6.26229 -0.35878 0.19251 0.34781 1.44127 1.47052 1.57039 1.98756 2.44591 2.54377 2.91809 3.19192 3.36935 3.53650 3.68501 3.85948 3.97293 4.02150 4.09889 4.20652 4.23909 4.26424 4.39161 4.44052 4.46645 4.57663 4.69201 4.74498 4.78557 4.82333 4.86936 4.93617 4.97148 5.05076 5.13185 5.19265 5.27925 5.30087 5.38322 5.39066 5.43468 5.51394 5.54304 5.73686 5.79407 5.81126 6.02318 6.14833 6.87032 7.00382 7.44076 8.94981 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.005691 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.325256 B = 4918.640064 C = 5989.247177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.995 5.995 4 C 0.262 3.738 5 C -0.531 4.531 6 H 0.077 0.923 7 C 0.012 3.988 8 N -0.931 5.931 9 Si 0.953 3.047 10 H -0.251 1.251 11 H -0.286 1.286 12 H -0.286 1.286 13 S 2.787 3.213 14 O -1.007 7.007 15 O -1.007 7.007 16 N -0.986 5.986 17 C 0.170 3.830 18 C -0.160 4.160 19 C -0.089 4.089 20 C -0.178 4.178 21 C 0.093 3.907 22 N -0.504 5.504 23 C 0.113 3.887 24 C 0.137 3.863 25 C -0.157 4.157 26 C -0.159 4.159 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.016 0.984 33 H 0.017 0.983 34 H 0.263 0.737 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.132 0.868 38 H 0.154 0.846 39 H 0.185 0.815 40 H 0.177 0.823 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.031 0.969 46 H 0.085 0.915 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.095 -4.831 13.125 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 N -0.836 5.836 4 C 0.138 3.862 5 C -0.570 4.570 6 H 0.095 0.905 7 C -0.187 4.187 8 N -0.571 5.571 9 Si 0.778 3.222 10 H -0.174 1.174 11 H -0.212 1.212 12 H -0.212 1.212 13 S 2.798 3.202 14 O -0.991 6.991 15 O -0.991 6.991 16 N -0.825 5.825 17 C 0.044 3.956 18 C -0.163 4.163 19 C -0.116 4.116 20 C -0.198 4.198 21 C -0.063 4.063 22 N -0.213 5.213 23 C -0.044 4.044 24 C 0.031 3.969 25 C -0.216 4.216 26 C -0.218 4.218 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.150 0.850 38 H 0.171 0.829 39 H 0.202 0.798 40 H 0.194 0.806 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.104 0.896 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.199 -4.391 14.026 15.951 hybrid contribution -0.418 0.345 -1.789 1.869 sum 5.781 -4.047 12.237 14.125 Atomic orbital electron populations 1.22201 0.96127 1.03257 1.01166 1.21236 0.94485 0.81500 1.03165 1.57696 1.79184 1.23916 1.22797 1.18724 0.96654 0.90720 0.80112 1.21844 1.02298 1.27162 1.05673 0.90480 1.25766 1.00483 0.94791 0.97640 1.70079 1.37987 1.31434 1.17575 0.85579 0.79969 0.78151 0.78478 1.17439 1.21245 1.21228 1.01515 0.73442 0.72703 0.72506 1.93505 1.71446 1.76435 1.57717 1.93470 1.86529 1.32784 1.86308 1.57927 1.23423 1.33672 1.67478 1.20053 0.93621 0.88964 0.92978 1.21382 0.97527 0.97231 1.00203 1.22148 0.98947 0.93675 0.96811 1.22429 0.99408 1.01144 0.96779 1.23236 0.90674 0.94420 0.97992 1.67760 1.31442 1.03737 1.18321 1.22892 0.94112 0.97427 0.89970 1.21079 0.99477 0.84735 0.91566 1.22137 0.98795 1.00438 1.00198 1.22338 1.01349 1.02148 0.95926 0.93744 0.93398 0.88969 0.89935 0.89912 0.96553 0.96513 0.92801 0.90558 0.86906 0.85036 0.82871 0.79842 0.80584 0.89440 0.91223 0.89218 0.92735 0.94931 0.89630 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.15 10.24 71.98 0.74 -4.41 16 2 C 0.12 4.00 6.06 86.38 0.52 4.53 16 3 N -1.00 -39.83 2.82 -519.83 -1.47 -41.30 16 4 C 0.26 12.77 5.44 85.63 0.47 13.23 16 5 C -0.53 -26.13 9.36 25.60 0.24 -25.89 16 6 H 0.08 3.53 7.81 -2.91 -0.02 3.51 16 7 C 0.01 0.64 5.46 84.66 0.46 1.10 16 8 N -0.93 -52.71 13.29 21.45 0.28 -52.42 16 9 Si 0.95 40.37 29.54 68.60 2.03 42.39 16 10 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 11 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 13 S 2.79 108.90 5.99 -56.49 -0.34 108.57 16 14 O -1.01 -40.37 15.75 -128.00 -2.02 -42.39 16 15 O -1.01 -45.42 13.13 -128.00 -1.68 -47.10 16 16 N -0.99 -31.01 2.78 -497.41 -1.38 -32.40 16 17 C 0.17 5.27 5.24 85.63 0.45 5.72 16 18 C -0.16 -4.72 4.81 -19.78 -0.10 -4.81 16 19 C -0.09 -2.85 9.46 22.47 0.21 -2.64 16 20 C -0.18 -4.55 10.11 22.36 0.23 -4.32 16 21 C 0.09 2.15 11.18 84.69 0.95 3.10 16 22 N -0.50 -13.00 10.36 -195.85 -2.03 -15.03 16 23 C 0.11 2.85 8.55 84.67 0.72 3.57 16 24 C 0.14 3.37 3.18 44.99 0.14 3.52 16 25 C -0.16 -3.13 9.00 71.98 0.65 -2.48 16 26 C -0.16 -3.46 8.27 71.98 0.60 -2.87 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 2.67 8.11 -2.39 -0.02 2.65 16 31 H 0.08 2.35 7.61 -2.39 -0.02 2.33 16 32 H 0.02 0.86 8.11 -2.39 -0.02 0.84 16 33 H 0.02 0.93 6.91 -2.38 -0.02 0.91 16 34 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 35 H 0.08 2.90 7.63 -2.39 -0.02 2.88 16 36 H 0.11 2.87 6.04 -2.39 -0.01 2.86 16 37 H 0.13 4.92 5.88 -2.90 -0.02 4.90 16 38 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 40 H 0.18 3.44 6.88 -2.91 -0.02 3.42 16 41 H 0.09 2.23 7.04 -2.39 -0.02 2.21 16 42 H 0.07 1.28 6.53 -2.39 -0.02 1.26 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.07 1.49 4.46 -2.39 -0.01 1.47 16 Total: -1.00 -66.48 385.79 0.63 -65.85 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.96 Total: 26.48 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 6.28 Total: -12.65 kcal Atomic # 7 Polarization: -136.55 SS G_CDS: -4.59 Total: -141.15 kcal Atomic # 8 Polarization: -85.79 SS G_CDS: -3.70 Total: -89.49 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: 108.90 SS G_CDS: -0.34 Total: 108.57 kcal Total: -66.48 0.63 -65.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336907897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.581 kcal (2) G-P(sol) polarization free energy of solvation -66.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds