Wall clock time and date at job start Wed Apr 1 2020 01:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46858 * 2 1 4 4 C 1.46504 * 120.00063 * 274.05729 * 3 2 1 5 5 C 1.50702 * 109.47008 * 280.93535 * 4 3 2 6 6 H 1.08005 * 120.00242 * 3.25816 * 5 4 3 7 7 C 1.37873 * 120.00097 * 183.25632 * 5 4 3 8 8 N 1.31512 * 119.99808 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00331 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46704 * 89.99996 * 9 7 5 11 11 H 1.48494 * 109.46992 * 210.00391 * 9 7 5 12 12 H 1.48500 * 109.46871 * 330.00085 * 9 7 5 13 13 S 1.65605 * 120.00136 * 94.06287 * 3 2 1 14 14 O 1.42103 * 106.40050 * 336.46029 * 13 3 2 15 15 O 1.42100 * 106.40224 * 203.54064 * 13 3 2 16 16 N 1.65600 * 107.21817 * 90.00155 * 13 3 2 17 17 C 1.46497 * 119.99880 * 65.59882 * 16 13 3 18 18 C 1.50703 * 109.46919 * 164.32761 * 17 16 13 19 19 C 1.38315 * 119.95984 * 269.97745 * 18 17 16 20 20 C 1.38267 * 120.14922 * 179.97438 * 19 18 17 21 21 C 1.38132 * 120.07275 * 359.74961 * 20 19 18 22 22 C 1.38892 * 119.92437 * 0.52357 * 21 20 19 23 23 N 1.39671 * 120.07467 * 179.74624 * 22 21 20 24 24 C 1.46497 * 120.00334 * 179.72532 * 23 22 21 25 25 C 1.46505 * 119.99653 * 359.45194 * 23 22 21 26 26 C 1.38077 * 119.96588 * 89.99868 * 18 17 16 27 27 H 1.09002 * 109.47500 * 305.05496 * 1 2 3 28 28 H 1.09008 * 109.47400 * 65.05002 * 1 2 3 29 29 H 1.08996 * 109.47276 * 185.05030 * 1 2 3 30 30 H 1.08994 * 109.47076 * 239.99563 * 2 1 3 31 31 H 1.09002 * 109.46637 * 119.99519 * 2 1 3 32 32 H 1.09003 * 109.47022 * 40.93199 * 4 3 2 33 33 H 1.08994 * 109.47403 * 160.93697 * 4 3 2 34 34 H 0.97006 * 120.00637 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99614 * 245.59714 * 16 13 3 36 36 H 1.08999 * 109.47432 * 44.33043 * 17 16 13 37 37 H 1.08998 * 109.47425 * 284.32266 * 17 16 13 38 38 H 1.08000 * 119.92563 * 359.97438 * 19 18 17 39 39 H 1.07999 * 119.95968 * 179.97438 * 20 19 18 40 40 H 1.07996 * 120.03583 * 180.27218 * 21 20 19 41 41 H 1.08994 * 109.47045 * 89.99835 * 24 23 22 42 42 H 1.09003 * 109.47426 * 210.00516 * 24 23 22 43 43 H 1.09005 * 109.46861 * 330.00389 * 24 23 22 44 44 H 1.08996 * 109.46817 * 89.99873 * 25 23 22 45 45 H 1.09003 * 109.46622 * 209.99686 * 25 23 22 46 46 H 1.09001 * 109.47435 * 329.99599 * 25 23 22 47 47 H 1.08000 * 120.03948 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1778 2.1018 -1.2656 5 6 3.4577 1.6681 -1.9326 6 1 4.0626 0.8920 -1.4875 7 6 3.8564 2.2622 -3.1112 8 7 3.1201 3.2077 -3.6529 9 14 5.4433 1.7253 -3.9377 10 1 5.1582 0.6160 -4.8828 11 1 6.0267 2.8711 -4.6806 12 1 6.4062 1.2620 -2.9066 13 16 2.3900 2.1281 1.4306 14 8 1.6491 1.4548 2.4391 15 8 2.2871 3.5252 1.1924 16 7 3.9877 1.8233 1.7419 17 6 5.0227 2.3682 0.8599 18 6 6.3617 2.2868 1.5467 19 6 6.8015 3.3389 2.3295 20 6 8.0291 3.2682 2.9618 21 6 8.8183 2.1437 2.8176 22 6 8.3822 1.0878 2.0276 23 7 9.1799 -0.0485 1.8753 24 6 8.7158 -1.1637 1.0466 25 6 10.4836 -0.1225 2.5396 26 6 7.1483 1.1624 1.3933 27 1 -0.3634 0.5902 0.8412 28 1 -0.3634 0.4335 -0.9318 29 1 -0.3633 -1.0236 0.0905 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3341 1.8795 -1.9190 33 1 2.2144 3.1736 -1.0713 34 1 3.4004 3.6255 -4.4823 35 1 4.2381 1.2840 2.5083 36 1 4.7943 3.4092 0.6314 37 1 5.0530 1.7914 -0.0645 38 1 6.1847 4.2175 2.4472 39 1 8.3697 4.0916 3.5720 40 1 9.7750 2.0873 3.3153 41 1 9.0483 -1.0159 0.0192 42 1 9.1265 -2.0975 1.4307 43 1 7.6269 -1.2076 1.0732 44 1 10.3626 -0.5633 3.5291 45 1 11.1588 -0.7398 1.9469 46 1 10.8994 0.8804 2.6369 47 1 6.8047 0.3416 0.7813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336916730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:17 Heat of formation + Delta-G solvation = -42.311589 kcal Electronic energy + Delta-G solvation = -28790.161227 eV Core-core repulsion = 24906.858066 eV Total energy + Delta-G solvation = -3883.303161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.64639 -36.75389 -36.50999 -36.00024 -35.15398 -34.52390 -32.71526 -30.94825 -29.95217 -29.90257 -28.39188 -26.63386 -25.09711 -24.79845 -23.14189 -21.71437 -21.56125 -20.32514 -18.76246 -17.51571 -16.97869 -16.73958 -16.39884 -15.83202 -15.60284 -15.38258 -15.17169 -14.99269 -14.42580 -14.13601 -13.81504 -13.74971 -13.32593 -13.12599 -12.85322 -12.78655 -12.54986 -12.44560 -12.13185 -12.09524 -12.03467 -11.93047 -11.66718 -11.55953 -11.37377 -11.28425 -11.13949 -11.06475 -10.93810 -10.63105 -10.50511 -10.36333 -10.01482 -9.80797 -9.77667 -8.91210 -8.69662 -8.51656 -8.03230 -7.27104 -6.12549 -4.19223 1.23902 1.61215 1.74419 3.05595 3.23290 3.31582 3.31947 3.60439 4.02394 4.26337 4.34338 4.77384 4.86683 4.99107 5.08336 5.14369 5.17579 5.21208 5.30337 5.42805 5.45720 5.47890 5.58701 5.61276 5.68118 5.73939 5.78502 5.81710 5.91380 6.10222 6.12466 6.23831 6.35893 6.37099 6.50978 6.64612 6.69455 6.73874 6.88365 6.99801 7.19752 7.33373 7.40297 7.48801 7.50597 7.70501 7.84952 8.14870 8.84998 9.46365 10.95187 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009300 B = 0.004497 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.040711 B = 6225.425059 C = 7612.214934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.271 1.271 13 S 2.785 3.215 14 O -1.001 7.001 15 O -0.981 6.981 16 N -1.125 6.125 17 C 0.153 3.847 18 C -0.040 4.040 19 C -0.160 4.160 20 C -0.077 4.077 21 C -0.199 4.199 22 C 0.207 3.793 23 N -0.642 5.642 24 C 0.093 3.907 25 C 0.097 3.903 26 C -0.178 4.178 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.055 0.945 34 H 0.265 0.735 35 H 0.407 0.593 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.047 0.953 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.045 0.955 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 -7.142 10.819 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.834 5.834 4 C 0.121 3.879 5 C -0.579 4.579 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.196 1.196 13 S 2.793 3.207 14 O -0.985 6.985 15 O -0.964 6.964 16 N -0.883 5.883 17 C 0.028 3.972 18 C -0.042 4.042 19 C -0.181 4.181 20 C -0.096 4.096 21 C -0.222 4.222 22 C 0.107 3.893 23 N -0.355 5.355 24 C -0.050 4.050 25 C -0.047 4.047 26 C -0.201 4.201 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.116 -6.522 10.986 16.296 hybrid contribution 1.405 -0.779 -0.607 1.718 sum 11.521 -7.302 10.378 17.140 Atomic orbital electron populations 1.22203 0.97039 1.01271 1.02332 1.20946 0.93544 0.82920 1.02074 1.57726 1.78749 1.22999 1.23878 1.19211 0.97152 0.92575 0.78982 1.21513 1.07331 1.21288 1.07735 0.91783 1.24935 0.96997 0.94734 0.96999 1.69930 1.38057 1.24820 1.19590 0.86655 0.83667 0.78284 0.79812 1.20703 1.21120 1.19573 1.01719 0.72603 0.73710 0.72621 1.93543 1.69831 1.76490 1.58656 1.93572 1.85941 1.31260 1.85630 1.55987 1.24983 1.68288 1.39017 1.20425 0.83142 1.01076 0.92588 1.19774 0.95364 0.93284 0.95785 1.20957 0.97186 0.99536 1.00374 1.20845 0.93948 0.96754 0.98058 1.20617 1.01620 0.94774 1.05142 1.17790 0.90464 0.86732 0.94356 1.46255 1.18617 1.16394 1.54189 1.21632 1.00814 0.88329 0.94268 1.21570 0.84194 1.02209 0.96697 1.20663 0.94300 0.99888 1.05204 0.92684 0.92167 0.92453 0.90121 0.92050 0.94769 0.92754 0.92551 0.76116 0.89520 0.88328 0.86051 0.86304 0.86444 0.93402 0.91811 0.91013 0.93683 0.91836 0.91461 0.85691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 2 C 0.13 2.27 6.01 -4.04 -0.02 2.24 16 3 N -0.99 -20.03 2.84 -115.66 -0.33 -20.36 16 4 C 0.24 5.84 5.48 -5.19 -0.03 5.81 16 5 C -0.54 -13.36 7.94 -34.44 -0.27 -13.64 16 6 H 0.06 1.51 6.74 -52.48 -0.35 1.16 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -24.69 13.29 55.43 0.74 -23.95 16 9 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 S 2.79 55.20 6.11 -107.50 -0.66 54.54 16 14 O -1.00 -20.48 17.09 -57.17 -0.98 -21.46 16 15 O -0.98 -22.77 16.09 -57.17 -0.92 -23.69 16 16 N -1.12 -18.85 6.04 -11.66 -0.07 -18.92 16 17 C 0.15 2.69 6.28 -5.19 -0.03 2.66 16 18 C -0.04 -0.62 5.28 -104.65 -0.55 -1.17 16 19 C -0.16 -2.30 9.70 -39.54 -0.38 -2.68 16 20 C -0.08 -0.96 10.04 -39.61 -0.40 -1.36 16 21 C -0.20 -2.43 9.20 -39.38 -0.36 -2.80 16 22 C 0.21 2.75 6.55 -83.79 -0.55 2.20 16 23 N -0.64 -7.14 3.41 -187.55 -0.64 -7.78 16 24 C 0.09 0.90 10.19 59.85 0.61 1.51 16 25 C 0.10 0.78 10.18 59.85 0.61 1.39 16 26 C -0.18 -2.60 8.86 -39.38 -0.35 -2.95 16 27 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 28 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.38 8.05 -51.93 -0.42 0.96 16 31 H 0.06 0.95 7.64 -51.93 -0.40 0.55 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 1.45 6.83 -51.93 -0.35 1.10 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.41 5.87 8.65 -34.47 -0.30 5.57 16 36 H 0.09 1.65 7.67 -51.93 -0.40 1.25 16 37 H 0.10 1.88 5.53 -51.93 -0.29 1.59 16 38 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.17 6.16 -52.49 -0.32 0.85 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 43 H 0.07 0.73 6.20 -51.93 -0.32 0.40 16 44 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 46 H 0.07 0.52 6.22 -51.93 -0.32 0.19 16 47 H 0.13 1.78 6.14 -52.49 -0.32 1.46 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -31.51 392.33 -10.57 -42.08 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -7.15 Total: 8.05 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -1.45 Total: -9.45 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -0.30 Total: -71.02 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.90 Total: -45.15 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 55.20 SS G_CDS: -0.66 Total: 54.54 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.51 -10.57 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336916730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.235 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds