Wall clock time and date at job start Wed Apr 1 2020 01:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.46858 * 2 1 4 4 C 1.46504 * 120.00063 * 274.05729 * 3 2 1 5 5 C 1.50702 * 109.47008 * 280.93535 * 4 3 2 6 6 H 1.08005 * 120.00242 * 3.25816 * 5 4 3 7 7 C 1.37873 * 120.00097 * 183.25632 * 5 4 3 8 8 N 1.31512 * 119.99808 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00331 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46704 * 89.99996 * 9 7 5 11 11 H 1.48494 * 109.46992 * 210.00391 * 9 7 5 12 12 H 1.48500 * 109.46871 * 330.00085 * 9 7 5 13 13 S 1.65605 * 120.00136 * 94.06287 * 3 2 1 14 14 O 1.42103 * 106.40050 * 336.46029 * 13 3 2 15 15 O 1.42100 * 106.40224 * 203.54064 * 13 3 2 16 16 N 1.65600 * 107.21817 * 90.00155 * 13 3 2 17 17 C 1.46497 * 119.99880 * 65.59882 * 16 13 3 18 18 C 1.50703 * 109.46919 * 164.32761 * 17 16 13 19 19 C 1.38315 * 119.95984 * 269.97745 * 18 17 16 20 20 C 1.38267 * 120.14922 * 179.97438 * 19 18 17 21 21 C 1.38132 * 120.07275 * 359.74961 * 20 19 18 22 22 C 1.38892 * 119.92437 * 0.52357 * 21 20 19 23 23 N 1.39671 * 120.07467 * 179.74624 * 22 21 20 24 24 C 1.46497 * 120.00334 * 179.72532 * 23 22 21 25 25 C 1.46505 * 119.99653 * 359.45194 * 23 22 21 26 26 C 1.38077 * 119.96588 * 89.99868 * 18 17 16 27 27 H 1.09002 * 109.47500 * 305.05496 * 1 2 3 28 28 H 1.09008 * 109.47400 * 65.05002 * 1 2 3 29 29 H 1.08996 * 109.47276 * 185.05030 * 1 2 3 30 30 H 1.08994 * 109.47076 * 239.99563 * 2 1 3 31 31 H 1.09002 * 109.46637 * 119.99519 * 2 1 3 32 32 H 1.09003 * 109.47022 * 40.93199 * 4 3 2 33 33 H 1.08994 * 109.47403 * 160.93697 * 4 3 2 34 34 H 0.97006 * 120.00637 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99614 * 245.59714 * 16 13 3 36 36 H 1.08999 * 109.47432 * 44.33043 * 17 16 13 37 37 H 1.08998 * 109.47425 * 284.32266 * 17 16 13 38 38 H 1.08000 * 119.92563 * 359.97438 * 19 18 17 39 39 H 1.07999 * 119.95968 * 179.97438 * 20 19 18 40 40 H 1.07996 * 120.03583 * 180.27218 * 21 20 19 41 41 H 1.08994 * 109.47045 * 89.99835 * 24 23 22 42 42 H 1.09003 * 109.47426 * 210.00516 * 24 23 22 43 43 H 1.09005 * 109.46861 * 330.00389 * 24 23 22 44 44 H 1.08996 * 109.46817 * 89.99873 * 25 23 22 45 45 H 1.09003 * 109.46622 * 209.99686 * 25 23 22 46 46 H 1.09001 * 109.47435 * 329.99599 * 25 23 22 47 47 H 1.08000 * 120.03948 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1778 2.1018 -1.2656 5 6 3.4577 1.6681 -1.9326 6 1 4.0626 0.8920 -1.4875 7 6 3.8564 2.2622 -3.1112 8 7 3.1201 3.2077 -3.6529 9 14 5.4433 1.7253 -3.9377 10 1 5.1582 0.6160 -4.8828 11 1 6.0267 2.8711 -4.6806 12 1 6.4062 1.2620 -2.9066 13 16 2.3900 2.1281 1.4306 14 8 1.6491 1.4548 2.4391 15 8 2.2871 3.5252 1.1924 16 7 3.9877 1.8233 1.7419 17 6 5.0227 2.3682 0.8599 18 6 6.3617 2.2868 1.5467 19 6 6.8015 3.3389 2.3295 20 6 8.0291 3.2682 2.9618 21 6 8.8183 2.1437 2.8176 22 6 8.3822 1.0878 2.0276 23 7 9.1799 -0.0485 1.8753 24 6 8.7158 -1.1637 1.0466 25 6 10.4836 -0.1225 2.5396 26 6 7.1483 1.1624 1.3933 27 1 -0.3634 0.5902 0.8412 28 1 -0.3634 0.4335 -0.9318 29 1 -0.3633 -1.0236 0.0905 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3341 1.8795 -1.9190 33 1 2.2144 3.1736 -1.0713 34 1 3.4004 3.6255 -4.4823 35 1 4.2381 1.2840 2.5083 36 1 4.7943 3.4092 0.6314 37 1 5.0530 1.7914 -0.0645 38 1 6.1847 4.2175 2.4472 39 1 8.3697 4.0916 3.5720 40 1 9.7750 2.0873 3.3153 41 1 9.0483 -1.0159 0.0192 42 1 9.1265 -2.0975 1.4307 43 1 7.6269 -1.2076 1.0732 44 1 10.3626 -0.5633 3.5291 45 1 11.1588 -0.7398 1.9469 46 1 10.8994 0.8804 2.6369 47 1 6.8047 0.3416 0.7813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336916730.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:16 Heat of formation + Delta-G solvation = -63.203617 kcal Electronic energy + Delta-G solvation = -28791.067174 eV Core-core repulsion = 24906.858066 eV Total energy + Delta-G solvation = -3884.209108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.64422 -38.33476 -37.72957 -37.55250 -36.88282 -35.77404 -34.64814 -32.03837 -31.50033 -30.91484 -29.16830 -28.48158 -26.35577 -25.65055 -24.91921 -23.27595 -22.60603 -21.35963 -20.34494 -18.82192 -18.56384 -18.43216 -17.98494 -17.20894 -16.80509 -16.62375 -16.36648 -16.03201 -15.90969 -15.43896 -15.13487 -14.81526 -14.80449 -14.59162 -14.24023 -13.83550 -13.74961 -13.62165 -13.48219 -13.42065 -13.35907 -13.16752 -13.09511 -13.01881 -12.89950 -12.70847 -12.68505 -12.64644 -12.27875 -12.19633 -12.08115 -11.73892 -11.64190 -11.55981 -10.72195 -10.54912 -10.40129 -9.83272 -9.68518 -8.17362 -8.13318 -6.25791 -0.31751 0.48788 0.70031 1.43761 1.46311 1.54734 2.05132 2.27024 2.44579 2.62046 2.99424 3.19152 3.44995 3.77898 3.99065 4.01519 4.13151 4.29036 4.40924 4.43272 4.44749 4.48404 4.52517 4.56178 4.61530 4.67912 4.74197 4.82300 4.91184 4.92463 4.97803 5.00663 5.05289 5.13022 5.18877 5.31130 5.35974 5.43246 5.55924 5.62871 5.80444 5.82196 5.91490 5.95845 6.14906 6.21268 6.37773 6.57758 6.85790 7.43593 8.94954 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009300 B = 0.004497 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.040711 B = 6225.425059 C = 7612.214934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.995 5.995 4 C 0.258 3.742 5 C -0.533 4.533 6 H 0.077 0.923 7 C 0.016 3.984 8 N -0.927 5.927 9 Si 0.949 3.051 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.257 1.257 13 S 2.799 3.201 14 O -1.004 7.004 15 O -1.018 7.018 16 N -1.108 6.108 17 C 0.160 3.840 18 C -0.054 4.054 19 C -0.179 4.179 20 C -0.072 4.072 21 C -0.197 4.197 22 C 0.203 3.797 23 N -0.645 5.645 24 C 0.088 3.912 25 C 0.090 3.910 26 C -0.193 4.193 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.017 0.983 33 H 0.021 0.979 34 H 0.264 0.736 35 H 0.420 0.580 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.271 -9.184 12.149 20.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.836 5.836 4 C 0.135 3.865 5 C -0.572 4.572 6 H 0.095 0.905 7 C -0.184 4.184 8 N -0.567 5.567 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.181 1.181 13 S 2.807 3.193 14 O -0.988 6.988 15 O -1.001 7.001 16 N -0.870 5.870 17 C 0.035 3.965 18 C -0.057 4.057 19 C -0.200 4.200 20 C -0.090 4.090 21 C -0.219 4.219 22 C 0.101 3.899 23 N -0.357 5.357 24 C -0.055 4.055 25 C -0.052 4.052 26 C -0.216 4.216 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.255 0.745 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.136 0.864 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.714 -8.620 12.348 19.708 hybrid contribution 0.638 -0.202 -0.936 1.151 sum 13.352 -8.822 11.412 19.656 Atomic orbital electron populations 1.22194 0.96002 1.03151 1.01300 1.21244 0.94540 0.81237 1.03328 1.57622 1.79371 1.24176 1.22415 1.18763 0.96493 0.91138 0.80138 1.21770 1.07260 1.20842 1.07338 0.90545 1.25720 1.00007 0.94797 0.97854 1.70066 1.40029 1.26430 1.20193 0.85682 0.80181 0.77687 0.79008 1.20006 1.21721 1.18088 1.01145 0.73057 0.72778 0.72272 1.93528 1.70461 1.76284 1.58549 1.93525 1.86713 1.33817 1.86091 1.55628 1.23711 1.68250 1.39362 1.20226 0.84616 0.99252 0.92419 1.19594 0.94486 0.94580 0.97003 1.21047 0.98429 0.99272 1.01229 1.21141 0.92873 0.97673 0.97362 1.20952 1.02466 0.94051 1.04469 1.17954 0.90194 0.87808 0.93976 1.46532 1.19298 1.15844 1.54042 1.21734 1.00523 0.89016 0.94235 1.21780 0.82989 1.03105 0.97297 1.20664 0.95227 0.99603 1.06115 0.93709 0.93247 0.89074 0.89831 0.89748 0.96497 0.96103 0.92695 0.74505 0.91807 0.89924 0.86414 0.83570 0.83766 0.93673 0.89379 0.91873 0.92637 0.90149 0.90878 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 10.24 71.98 0.74 -4.43 16 2 C 0.12 4.09 6.01 86.38 0.52 4.61 16 3 N -0.99 -40.77 2.84 -519.85 -1.48 -42.24 16 4 C 0.26 12.88 5.48 85.63 0.47 13.35 16 5 C -0.53 -26.80 7.94 25.60 0.20 -26.60 16 6 H 0.08 3.59 6.74 -2.91 -0.02 3.57 16 7 C 0.02 0.84 5.46 84.65 0.46 1.30 16 8 N -0.93 -53.23 13.29 21.45 0.28 -52.94 16 9 Si 0.95 41.29 29.54 68.60 2.03 43.31 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 13 S 2.80 112.69 6.11 -56.49 -0.35 112.34 16 14 O -1.00 -40.57 17.09 -128.00 -2.19 -42.76 16 15 O -1.02 -49.21 16.09 -128.00 -2.06 -51.27 16 16 N -1.11 -37.40 6.04 -190.79 -1.15 -38.56 16 17 C 0.16 5.78 6.28 85.63 0.54 6.32 16 18 C -0.05 -1.69 5.28 -19.88 -0.10 -1.79 16 19 C -0.18 -5.05 9.70 22.29 0.22 -4.83 16 20 C -0.07 -1.63 10.04 22.25 0.22 -1.41 16 21 C -0.20 -4.24 9.20 22.40 0.21 -4.04 16 22 C 0.20 4.95 6.55 38.22 0.25 5.20 16 23 N -0.65 -12.58 3.41 -747.27 -2.55 -15.13 16 24 C 0.09 1.50 10.19 127.77 1.30 2.80 16 25 C 0.09 1.14 10.18 127.77 1.30 2.44 16 26 C -0.19 -5.48 8.86 22.40 0.20 -5.28 16 27 H 0.04 1.46 8.11 -2.39 -0.02 1.44 16 28 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 29 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 2.76 8.05 -2.39 -0.02 2.74 16 31 H 0.08 2.44 7.64 -2.39 -0.02 2.43 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.02 1.18 6.83 -2.39 -0.02 1.17 16 34 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 35 H 0.42 11.90 8.65 -96.74 -0.84 11.06 16 36 H 0.06 2.56 7.67 -2.39 -0.02 2.55 16 37 H 0.08 3.22 5.53 -2.39 -0.01 3.21 16 38 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.14 2.29 6.16 -2.91 -0.02 2.27 16 41 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 42 H 0.09 1.05 8.07 -2.39 -0.02 1.04 16 43 H 0.06 1.18 6.20 -2.38 -0.01 1.17 16 44 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.08 0.76 8.07 -2.39 -0.02 0.74 16 46 H 0.07 0.84 6.22 -2.39 -0.01 0.82 16 47 H 0.12 3.43 6.14 -2.91 -0.02 3.41 16 Total: -1.00 -68.71 392.33 -0.80 -69.51 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.14 Total: 30.10 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 6.52 Total: -12.37 kcal Atomic # 7 Polarization: -143.97 SS G_CDS: -4.89 Total: -148.87 kcal Atomic # 8 Polarization: -89.78 SS G_CDS: -4.25 Total: -94.03 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 112.69 SS G_CDS: -0.35 Total: 112.34 kcal Total: -68.71 -0.80 -69.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336916730.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.306 kcal (2) G-P(sol) polarization free energy of solvation -68.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds