Wall clock time and date at job start Wed Apr 1 2020 01:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46782 * 2 1 4 4 C 1.46493 * 120.00065 * 84.99540 * 3 2 1 5 5 C 1.50706 * 109.47128 * 85.00121 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31514 * 120.00481 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99745 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47209 * 90.00365 * 9 7 5 11 11 H 1.48506 * 109.47294 * 210.00213 * 9 7 5 12 12 H 1.48501 * 109.47275 * 330.00116 * 9 7 5 13 13 S 1.65596 * 119.99652 * 264.99912 * 3 2 1 14 14 O 1.42099 * 106.40339 * 23.53868 * 13 3 2 15 15 O 1.42105 * 106.40306 * 156.45830 * 13 3 2 16 16 N 1.65598 * 107.21978 * 269.99930 * 13 3 2 17 17 C 1.47419 * 125.64977 * 90.02408 * 16 13 3 18 18 C 1.54908 * 104.83594 * 204.09606 * 17 16 13 19 19 C 1.55156 * 101.57903 * 322.99390 * 18 17 16 20 20 C 1.47024 * 125.65006 * 269.72388 * 16 13 3 21 21 H 1.08996 * 109.88494 * 59.55151 * 20 16 13 22 22 C 1.50700 * 109.87879 * 298.39026 * 20 16 13 23 23 C 1.34856 * 125.89119 * 4.69278 * 22 20 16 24 24 C 1.40895 * 107.41460 * 179.88745 * 23 22 20 25 25 C 1.34840 * 107.42056 * 0.37675 * 24 23 22 26 26 N 1.36341 * 125.89013 * 185.00113 * 22 20 16 27 27 C 1.46492 * 125.63772 * 359.95155 * 26 22 20 28 28 H 1.08996 * 109.47402 * 60.00415 * 1 2 3 29 29 H 1.09009 * 109.46944 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47571 * 300.00113 * 1 2 3 31 31 H 1.08996 * 109.47088 * 240.00102 * 2 1 3 32 32 H 1.09005 * 109.46896 * 119.99308 * 2 1 3 33 33 H 1.09001 * 109.47786 * 325.00394 * 4 3 2 34 34 H 1.08998 * 109.47558 * 205.00257 * 4 3 2 35 35 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.09003 * 110.36954 * 322.93539 * 17 16 13 37 37 H 1.08997 * 110.37009 * 85.25472 * 17 16 13 38 38 H 1.09008 * 111.00728 * 81.06558 * 18 17 16 39 39 H 1.09003 * 111.01009 * 204.87470 * 18 17 16 40 40 H 1.09006 * 110.71971 * 153.86815 * 19 18 17 41 41 H 1.09000 * 110.71734 * 276.95489 * 19 18 17 42 42 H 1.07999 * 126.29123 * 0.02562 * 23 22 20 43 43 H 1.08000 * 126.28582 * 180.12812 * 24 23 22 44 44 H 1.07997 * 125.89294 * 179.73769 * 25 24 23 45 45 H 1.09005 * 109.47282 * 90.00570 * 27 26 22 46 46 H 1.09001 * 109.47448 * 210.00402 * 27 26 22 47 47 H 1.09003 * 109.47491 * 330.00456 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1088 1.2638 5 6 3.4946 1.7890 1.8824 6 1 4.1719 1.1113 1.3840 7 6 3.8549 2.3656 3.0818 8 7 5.0215 2.0870 3.6213 9 14 2.6866 3.5438 3.9399 10 1 1.8005 2.7823 4.8566 11 1 3.4688 4.5369 4.7191 12 1 1.8615 4.2488 2.9262 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4414 -2.4448 15 8 2.3055 3.5187 -1.1999 16 7 4.0143 1.8138 -1.7138 17 6 4.5491 0.6595 -2.4587 18 6 5.9960 0.4845 -1.9338 19 6 6.4368 1.9592 -1.7382 20 6 5.1388 2.6512 -1.2711 21 1 5.1349 2.7328 -0.1843 22 6 5.0332 4.0206 -1.8912 23 6 4.0162 4.4653 -2.6572 24 6 4.3142 5.7924 -3.0248 25 6 5.5057 6.1053 -2.4764 26 7 5.9519 5.0217 -1.7794 27 6 7.2103 4.9459 -1.0332 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.3616 1.8098 1.9453 34 1 2.0919 3.1804 1.0756 35 1 5.2750 2.4929 4.4650 36 1 3.9593 -0.2330 -2.2499 37 1 4.5563 0.8687 -3.5284 38 1 6.0055 -0.0550 -0.9867 39 1 6.6218 -0.0163 -2.6725 40 1 7.2117 2.0321 -0.9750 41 1 6.7832 2.3862 -2.6793 42 1 3.1344 3.9075 -2.9357 43 1 3.7028 6.4387 -3.6370 44 1 6.0184 7.0509 -2.5731 45 1 8.0008 4.5822 -1.6898 46 1 7.4732 5.9366 -0.6625 47 1 7.0935 4.2624 -0.1922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336925762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:09 Heat of formation + Delta-G solvation = -4.826604 kcal Electronic energy + Delta-G solvation = -30683.195561 eV Core-core repulsion = 26801.517871 eV Total energy + Delta-G solvation = -3881.677690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.92292 -37.94113 -36.69246 -36.13848 -35.25623 -32.66942 -32.56944 -30.64059 -30.28468 -30.20917 -27.13751 -26.64523 -26.01482 -22.91587 -22.45494 -21.53705 -21.19729 -19.98377 -19.25843 -18.03522 -17.48674 -17.19082 -16.67711 -16.31549 -15.82545 -15.15828 -14.87332 -14.30429 -14.17183 -13.74327 -13.53931 -13.51372 -13.08643 -12.95160 -12.75929 -12.73230 -12.53068 -12.39638 -12.23692 -12.07790 -11.91339 -11.83639 -11.70199 -11.45377 -11.16910 -11.14690 -10.99608 -10.99396 -10.93182 -10.78445 -10.58092 -10.49884 -10.31372 -10.11208 -9.60783 -8.73317 -8.67563 -8.11801 -8.07684 -7.46874 -6.19742 -4.18958 1.20927 2.67320 3.22397 3.23724 3.31273 3.38748 3.52054 3.58316 4.11479 4.33467 4.63060 4.79820 4.97990 5.04125 5.13343 5.20810 5.22872 5.34899 5.36735 5.45797 5.61722 5.63740 5.69763 5.74198 5.74376 5.87585 5.94541 6.00161 6.02374 6.05582 6.09255 6.21876 6.28393 6.36882 6.45190 6.54159 6.59363 6.71857 6.77445 6.83901 6.89155 7.15747 7.43289 7.49770 7.54633 7.67171 7.79924 8.38667 8.83464 9.42359 10.92190 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009357 B = 0.006652 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.549521 B = 4208.304830 C = 5329.543767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 N -0.987 5.987 4 C 0.213 3.787 5 C -0.537 4.537 6 H 0.082 0.918 7 C 0.078 3.922 8 N -0.894 5.894 9 Si 0.863 3.137 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.260 1.260 13 S 2.792 3.208 14 O -0.994 6.994 15 O -0.957 6.957 16 N -1.000 6.000 17 C 0.126 3.874 18 C -0.127 4.127 19 C -0.121 4.121 20 C 0.224 3.776 21 H 0.107 0.893 22 C 0.007 3.993 23 C -0.157 4.157 24 C -0.202 4.202 25 C -0.024 4.024 26 N -0.443 5.443 27 C 0.071 3.929 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.048 0.952 35 H 0.264 0.736 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.118 0.882 43 H 0.129 0.871 44 H 0.156 0.844 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.594 -0.609 -10.426 11.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.827 5.827 4 C 0.090 3.910 5 C -0.576 4.576 6 H 0.100 0.900 7 C -0.125 4.125 8 N -0.533 5.533 9 Si 0.690 3.310 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.184 1.184 13 S 2.802 3.198 14 O -0.978 6.978 15 O -0.941 6.941 16 N -0.838 5.838 17 C 0.000 4.000 18 C -0.166 4.166 19 C -0.160 4.160 20 C 0.116 3.884 21 H 0.124 0.876 22 C -0.105 4.105 23 C -0.182 4.182 24 C -0.227 4.227 25 C -0.154 4.154 26 N -0.120 5.120 27 C -0.071 4.071 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.136 0.864 43 H 0.147 0.853 44 H 0.173 0.827 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.335 -0.072 -10.594 11.106 hybrid contribution -0.319 0.523 1.036 1.203 sum 3.016 0.451 -9.558 10.033 Atomic orbital electron populations 1.22220 0.96897 1.01585 1.02285 1.21025 0.93603 0.82800 1.02436 1.57640 1.78430 1.22979 1.23622 1.19584 0.97884 0.92486 0.81067 1.21449 1.01022 1.28715 1.06394 0.90043 1.24811 0.94970 0.95932 0.96819 1.69880 1.20531 1.43856 1.18991 0.87022 0.81764 0.81758 0.80445 1.20021 1.20998 1.18410 1.01669 0.71815 0.73550 0.72752 1.93549 1.70012 1.76747 1.57483 1.93700 1.85338 1.29419 1.85664 1.58939 1.23188 1.33448 1.68186 1.21875 0.94783 0.87830 0.95471 1.22759 0.95275 0.96478 1.02095 1.22696 0.96292 0.95435 1.01578 1.19540 0.85713 0.83964 0.99188 0.87568 1.20522 0.92589 0.91954 1.05455 1.20506 0.97996 0.96407 1.03288 1.20761 0.97564 0.97169 1.07197 1.21602 0.98478 0.92432 1.02856 1.43614 1.16795 1.11286 1.40322 1.22030 0.84209 1.04040 0.96773 0.92580 0.92098 0.92264 0.91781 0.89952 0.95114 0.93436 0.92590 0.91070 0.91806 0.89970 0.90461 0.90143 0.91093 0.86404 0.85295 0.82665 0.91385 0.90288 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.13 2.21 6.06 -4.04 -0.02 2.18 16 3 N -0.99 -20.18 2.82 -115.66 -0.33 -20.50 16 4 C 0.21 4.98 4.50 -5.19 -0.02 4.96 16 5 C -0.54 -13.84 9.51 -34.44 -0.33 -14.17 16 6 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 7 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 8 N -0.89 -25.19 13.96 55.43 0.77 -24.42 16 9 Si 0.86 20.70 27.47 -169.99 -4.67 16.03 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 13 S 2.79 57.20 5.23 -107.50 -0.56 56.63 16 14 O -0.99 -20.74 16.69 -57.17 -0.95 -21.70 16 15 O -0.96 -22.22 12.29 -57.17 -0.70 -22.92 16 16 N -1.00 -17.89 3.15 -105.64 -0.33 -18.22 16 17 C 0.13 1.80 6.98 -2.53 -0.02 1.78 16 18 C -0.13 -1.57 7.09 -24.58 -0.17 -1.74 16 19 C -0.12 -1.63 5.47 -24.90 -0.14 -1.77 16 20 C 0.22 3.95 3.06 -68.10 -0.21 3.74 16 21 H 0.11 2.21 7.71 -51.93 -0.40 1.81 16 22 C 0.01 0.13 5.72 -81.79 -0.47 -0.34 16 23 C -0.16 -3.11 8.04 -39.78 -0.32 -3.43 16 24 C -0.20 -3.51 10.86 -39.78 -0.43 -3.94 16 25 C -0.02 -0.37 11.43 -16.75 -0.19 -0.57 16 26 N -0.44 -7.05 3.15 -119.90 -0.38 -7.42 16 27 C 0.07 0.85 10.13 59.84 0.61 1.46 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 1.00 7.61 -51.93 -0.40 0.60 16 32 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 33 H 0.03 0.70 7.55 -51.93 -0.39 0.30 16 34 H 0.05 1.19 5.95 -51.93 -0.31 0.88 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.00 8.02 -51.93 -0.42 0.59 16 41 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16 42 H 0.12 2.45 5.37 -52.49 -0.28 2.17 16 43 H 0.13 1.96 8.06 -52.49 -0.42 1.54 16 44 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.09 1.13 7.54 -51.93 -0.39 0.74 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -32.77 381.53 -10.49 -43.26 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.66 Total: 5.60 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.43 Total: -12.09 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -0.26 Total: -70.57 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -1.66 Total: -44.62 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Atomic # 16 Polarization: 57.20 SS G_CDS: -0.56 Total: 56.63 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.77 -10.49 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336925762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.438 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds