Wall clock time and date at job start Wed Apr 1 2020 01:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46782 * 2 1 4 4 C 1.46493 * 120.00065 * 84.99540 * 3 2 1 5 5 C 1.50706 * 109.47128 * 85.00121 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31514 * 120.00481 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99745 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47209 * 90.00365 * 9 7 5 11 11 H 1.48506 * 109.47294 * 210.00213 * 9 7 5 12 12 H 1.48501 * 109.47275 * 330.00116 * 9 7 5 13 13 S 1.65596 * 119.99652 * 264.99912 * 3 2 1 14 14 O 1.42099 * 106.40339 * 23.53868 * 13 3 2 15 15 O 1.42105 * 106.40306 * 156.45830 * 13 3 2 16 16 N 1.65598 * 107.21978 * 269.99930 * 13 3 2 17 17 C 1.47419 * 125.64977 * 90.02408 * 16 13 3 18 18 C 1.54908 * 104.83594 * 204.09606 * 17 16 13 19 19 C 1.55156 * 101.57903 * 322.99390 * 18 17 16 20 20 C 1.47024 * 125.65006 * 269.72388 * 16 13 3 21 21 H 1.08996 * 109.88494 * 59.55151 * 20 16 13 22 22 C 1.50700 * 109.87879 * 298.39026 * 20 16 13 23 23 C 1.34856 * 125.89119 * 4.69278 * 22 20 16 24 24 C 1.40895 * 107.41460 * 179.88745 * 23 22 20 25 25 C 1.34840 * 107.42056 * 0.37675 * 24 23 22 26 26 N 1.36341 * 125.89013 * 185.00113 * 22 20 16 27 27 C 1.46492 * 125.63772 * 359.95155 * 26 22 20 28 28 H 1.08996 * 109.47402 * 60.00415 * 1 2 3 29 29 H 1.09009 * 109.46944 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47571 * 300.00113 * 1 2 3 31 31 H 1.08996 * 109.47088 * 240.00102 * 2 1 3 32 32 H 1.09005 * 109.46896 * 119.99308 * 2 1 3 33 33 H 1.09001 * 109.47786 * 325.00394 * 4 3 2 34 34 H 1.08998 * 109.47558 * 205.00257 * 4 3 2 35 35 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.09003 * 110.36954 * 322.93539 * 17 16 13 37 37 H 1.08997 * 110.37009 * 85.25472 * 17 16 13 38 38 H 1.09008 * 111.00728 * 81.06558 * 18 17 16 39 39 H 1.09003 * 111.01009 * 204.87470 * 18 17 16 40 40 H 1.09006 * 110.71971 * 153.86815 * 19 18 17 41 41 H 1.09000 * 110.71734 * 276.95489 * 19 18 17 42 42 H 1.07999 * 126.29123 * 0.02562 * 23 22 20 43 43 H 1.08000 * 126.28582 * 180.12812 * 24 23 22 44 44 H 1.07997 * 125.89294 * 179.73769 * 25 24 23 45 45 H 1.09005 * 109.47282 * 90.00570 * 27 26 22 46 46 H 1.09001 * 109.47448 * 210.00402 * 27 26 22 47 47 H 1.09003 * 109.47491 * 330.00456 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1088 1.2638 5 6 3.4946 1.7890 1.8824 6 1 4.1719 1.1113 1.3840 7 6 3.8549 2.3656 3.0818 8 7 5.0215 2.0870 3.6213 9 14 2.6866 3.5438 3.9399 10 1 1.8005 2.7823 4.8566 11 1 3.4688 4.5369 4.7191 12 1 1.8615 4.2488 2.9262 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4414 -2.4448 15 8 2.3055 3.5187 -1.1999 16 7 4.0143 1.8138 -1.7138 17 6 4.5491 0.6595 -2.4587 18 6 5.9960 0.4845 -1.9338 19 6 6.4368 1.9592 -1.7382 20 6 5.1388 2.6512 -1.2711 21 1 5.1349 2.7328 -0.1843 22 6 5.0332 4.0206 -1.8912 23 6 4.0162 4.4653 -2.6572 24 6 4.3142 5.7924 -3.0248 25 6 5.5057 6.1053 -2.4764 26 7 5.9519 5.0217 -1.7794 27 6 7.2103 4.9459 -1.0332 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.3616 1.8098 1.9453 34 1 2.0919 3.1804 1.0756 35 1 5.2750 2.4929 4.4650 36 1 3.9593 -0.2330 -2.2499 37 1 4.5563 0.8687 -3.5284 38 1 6.0055 -0.0550 -0.9867 39 1 6.6218 -0.0163 -2.6725 40 1 7.2117 2.0321 -0.9750 41 1 6.7832 2.3862 -2.6793 42 1 3.1344 3.9075 -2.9357 43 1 3.7028 6.4387 -3.6370 44 1 6.0184 7.0509 -2.5731 45 1 8.0008 4.5822 -1.6898 46 1 7.4732 5.9366 -0.6625 47 1 7.0935 4.2624 -0.1922 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336925762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:09 Heat of formation + Delta-G solvation = -25.831597 kcal Electronic energy + Delta-G solvation = -30684.106406 eV Core-core repulsion = 26801.517871 eV Total energy + Delta-G solvation = -3882.588535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.19015 -39.17942 -38.36027 -37.77851 -36.94115 -34.66673 -33.75239 -31.89086 -31.79103 -31.54818 -28.93540 -27.88131 -27.12424 -24.61480 -23.75628 -23.16455 -22.33358 -21.29272 -20.59841 -19.46560 -19.11786 -18.95592 -18.36738 -17.67753 -17.36345 -16.56890 -16.14265 -16.01081 -15.71019 -15.06219 -14.91578 -14.80759 -14.55430 -14.43968 -14.18400 -14.07856 -13.90569 -13.82256 -13.71467 -13.50639 -13.45329 -13.12471 -13.05148 -12.89772 -12.82014 -12.71433 -12.54547 -12.39182 -12.28023 -12.12369 -12.07083 -12.03291 -11.76191 -11.66674 -11.52187 -10.75876 -10.12175 -9.78538 -9.36680 -8.79314 -8.28740 -6.30186 -0.37802 1.30923 1.36063 1.39922 1.45945 1.88407 2.15972 2.20130 2.33063 2.58460 3.05822 3.24301 3.59534 3.73798 3.88910 3.93166 4.05860 4.17866 4.34977 4.35687 4.39705 4.43728 4.49812 4.57835 4.64164 4.68965 4.71848 4.76409 4.82136 4.87383 4.91035 4.94763 4.97705 5.01642 5.04388 5.12628 5.27862 5.34127 5.39677 5.46409 5.47441 5.48979 5.53576 5.85076 6.14731 6.32681 6.35054 6.62636 6.72363 7.32879 8.85458 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009357 B = 0.006652 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.549521 B = 4208.304830 C = 5329.543767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.992 5.992 4 C 0.223 3.777 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.033 3.967 8 N -0.928 5.928 9 Si 0.911 3.089 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.263 1.263 13 S 2.799 3.201 14 O -1.001 7.001 15 O -0.990 6.990 16 N -1.003 6.003 17 C 0.113 3.887 18 C -0.116 4.116 19 C -0.111 4.111 20 C 0.224 3.776 21 H 0.065 0.935 22 C -0.010 4.010 23 C -0.191 4.191 24 C -0.232 4.232 25 C -0.007 4.007 26 N -0.444 5.444 27 C 0.065 3.935 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.028 0.972 35 H 0.266 0.734 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.142 0.858 44 H 0.198 0.802 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 -0.717 -11.031 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.832 5.832 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.167 4.167 8 N -0.568 5.568 9 Si 0.736 3.264 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.187 1.187 13 S 2.810 3.190 14 O -0.986 6.986 15 O -0.974 6.974 16 N -0.843 5.843 17 C -0.011 4.011 18 C -0.155 4.155 19 C -0.150 4.150 20 C 0.116 3.884 21 H 0.083 0.917 22 C -0.123 4.123 23 C -0.216 4.216 24 C -0.257 4.257 25 C -0.138 4.138 26 N -0.121 5.121 27 C -0.076 4.076 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.159 0.841 44 H 0.215 0.785 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.367 -0.207 -11.202 12.025 hybrid contribution -0.598 0.531 1.161 1.410 sum 3.769 0.323 -10.041 10.730 Atomic orbital electron populations 1.22210 0.95305 1.03581 1.01610 1.21310 0.95027 0.81165 1.03255 1.57625 1.79037 1.24178 1.22364 1.19293 0.96807 0.91780 0.82291 1.21545 1.01557 1.27540 1.05957 0.92199 1.25427 0.96212 0.97397 0.97687 1.69973 1.21970 1.45246 1.19603 0.86257 0.80311 0.80235 0.79619 1.18476 1.20730 1.18705 1.01219 0.72368 0.72773 0.72599 1.93522 1.70817 1.76685 1.57551 1.93654 1.86153 1.31564 1.86062 1.58748 1.22427 1.34736 1.68354 1.22233 0.96115 0.86861 0.95937 1.22756 0.94363 0.95814 1.02577 1.22684 0.94268 0.95710 1.02378 1.19496 0.87527 0.84601 0.96804 0.91742 1.20585 0.93255 0.92819 1.05640 1.20576 0.98021 0.97844 1.05179 1.21052 0.99171 0.96669 1.08761 1.22216 0.97578 0.93290 1.00676 1.43916 1.17433 1.10668 1.40037 1.22310 0.83205 1.05374 0.96683 0.93549 0.88790 0.92614 0.90147 0.89932 0.94081 0.95399 0.92475 0.90229 0.90498 0.91038 0.86669 0.89127 0.89585 0.88599 0.84067 0.78475 0.88337 0.87914 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.98 10.24 71.98 0.74 -4.25 16 2 C 0.12 4.00 6.06 86.38 0.52 4.52 16 3 N -0.99 -41.21 2.82 -519.83 -1.47 -42.68 16 4 C 0.22 10.59 4.50 85.64 0.39 10.98 16 5 C -0.53 -27.78 9.51 25.60 0.24 -27.54 16 6 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 7 C 0.03 1.77 5.47 84.65 0.46 2.24 16 8 N -0.93 -53.02 13.96 21.45 0.30 -52.72 16 9 Si 0.91 42.69 27.47 68.60 1.88 44.58 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.26 -12.35 6.53 99.48 0.65 -11.70 16 13 S 2.80 118.01 5.23 -56.49 -0.30 117.71 16 14 O -1.00 -42.37 16.69 -128.00 -2.14 -44.51 16 15 O -0.99 -48.17 12.29 -128.00 -1.57 -49.74 16 16 N -1.00 -36.53 3.15 -488.14 -1.54 -38.07 16 17 C 0.11 3.12 6.98 86.86 0.61 3.73 16 18 C -0.12 -2.66 7.09 31.99 0.23 -2.43 16 19 C -0.11 -2.86 5.47 31.78 0.17 -2.69 16 20 C 0.22 8.06 3.06 44.59 0.14 8.19 16 21 H 0.06 2.84 7.71 -2.39 -0.02 2.82 16 22 C -0.01 -0.36 5.72 41.08 0.23 -0.13 16 23 C -0.19 -7.78 8.04 22.14 0.18 -7.60 16 24 C -0.23 -8.04 10.86 22.14 0.24 -7.80 16 25 C -0.01 -0.22 11.43 83.21 0.95 0.74 16 26 N -0.44 -13.59 3.15 -533.26 -1.68 -15.26 16 27 C 0.06 1.41 10.13 127.77 1.29 2.70 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.08 2.44 7.61 -2.39 -0.02 2.42 16 32 H 0.08 2.79 8.11 -2.38 -0.02 2.77 16 33 H 0.04 1.86 7.55 -2.39 -0.02 1.84 16 34 H 0.03 1.44 5.95 -2.39 -0.01 1.43 16 35 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.09 2.14 8.02 -2.38 -0.02 2.12 16 41 H 0.09 1.97 7.84 -2.39 -0.02 1.95 16 42 H 0.10 4.22 5.37 -2.91 -0.02 4.21 16 43 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 44 H 0.20 3.84 8.06 -2.91 -0.02 3.82 16 45 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.07 1.82 7.54 -2.39 -0.02 1.80 16 Total: -1.00 -73.27 381.53 0.78 -72.49 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.89 Total: 27.55 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 6.39 Total: -19.34 kcal Atomic # 7 Polarization: -144.35 SS G_CDS: -4.39 Total: -148.73 kcal Atomic # 8 Polarization: -90.54 SS G_CDS: -3.71 Total: -94.25 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.88 Total: 44.58 kcal Atomic # 16 Polarization: 118.01 SS G_CDS: -0.30 Total: 117.71 kcal Total: -73.27 0.78 -72.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336925762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.656 kcal (2) G-P(sol) polarization free energy of solvation -73.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds