Wall clock time and date at job start Wed Apr 1 2020 01:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47079 * 2 1 4 4 C 1.46501 * 119.99789 * 274.99562 * 3 2 1 5 5 C 1.50695 * 109.47066 * 275.00260 * 4 3 2 6 6 H 1.07994 * 120.00084 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99868 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99889 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99928 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46986 * 90.00305 * 9 7 5 11 11 H 1.48500 * 109.47582 * 210.00577 * 9 7 5 12 12 H 1.48504 * 109.47562 * 330.00572 * 9 7 5 13 13 S 1.65604 * 120.00194 * 94.99668 * 3 2 1 14 14 O 1.42097 * 106.40031 * 156.45940 * 13 3 2 15 15 O 1.42103 * 106.40145 * 23.54070 * 13 3 2 16 16 N 1.65596 * 107.21775 * 269.99961 * 13 3 2 17 17 C 1.47427 * 125.65057 * 269.95575 * 16 13 3 18 18 C 1.54902 * 104.83248 * 155.90972 * 17 16 13 19 19 C 1.55153 * 101.58379 * 37.00942 * 18 17 16 20 20 C 1.47024 * 125.64785 * 90.00217 * 16 13 3 21 21 H 1.09002 * 109.88151 * 300.59455 * 20 16 13 22 22 C 1.50700 * 109.88158 * 61.60317 * 20 16 13 23 23 C 1.34846 * 125.89251 * 355.04481 * 22 20 16 24 24 C 1.40894 * 107.41755 * 179.97438 * 23 22 20 25 25 C 1.34850 * 107.41649 * 359.97438 * 24 23 22 26 26 N 1.36342 * 125.88697 * 174.99790 * 22 20 16 27 27 C 1.46494 * 125.63973 * 0.05843 * 26 22 20 28 28 H 1.09005 * 109.47228 * 300.00291 * 1 2 3 29 29 H 1.08994 * 109.47131 * 59.99950 * 1 2 3 30 30 H 1.08999 * 109.47393 * 180.02562 * 1 2 3 31 31 H 1.08988 * 109.47426 * 239.99470 * 2 1 3 32 32 H 1.09004 * 109.46825 * 119.99365 * 2 1 3 33 33 H 1.09006 * 109.46847 * 35.00369 * 4 3 2 34 34 H 1.09005 * 109.46991 * 155.00087 * 4 3 2 35 35 H 0.97001 * 119.99521 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.36326 * 274.75140 * 17 16 13 37 37 H 1.08998 * 110.36265 * 37.06993 * 17 16 13 38 38 H 1.09004 * 111.00351 * 155.08800 * 18 17 16 39 39 H 1.09008 * 111.00475 * 278.90002 * 18 17 16 40 40 H 1.09004 * 110.72289 * 206.13113 * 19 18 17 41 41 H 1.09002 * 110.71884 * 82.85838 * 19 18 17 42 42 H 1.07995 * 126.29432 * 359.94132 * 23 22 20 43 43 H 1.08004 * 126.29068 * 180.02562 * 24 23 22 44 44 H 1.08006 * 125.89071 * 180.26089 * 25 24 23 45 45 H 1.08996 * 109.47494 * 270.00282 * 27 26 22 46 46 H 1.09006 * 109.47199 * 30.00109 * 27 26 22 47 47 H 1.09003 * 109.47307 * 149.99496 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1724 1.1116 -1.3835 7 6 3.8530 2.3612 -3.0844 8 7 5.0196 2.0824 -3.6237 9 14 2.6814 3.5329 -3.9468 10 1 2.9451 4.9213 -3.4908 11 1 2.8865 3.4466 -5.4150 12 1 1.2809 3.1622 -3.6201 13 16 2.4121 2.1203 1.4287 14 8 3.3283 3.1571 1.1049 15 8 2.7095 1.0800 2.3500 16 7 1.0431 2.8643 1.9893 17 6 0.6298 4.2462 1.6842 18 6 -0.9060 4.2546 1.8865 19 6 -1.0646 3.3100 3.1071 20 6 0.0388 2.2565 2.8746 21 1 -0.3849 1.3706 2.4014 22 6 0.6741 1.8811 4.1886 23 6 1.9848 1.9793 4.4897 24 6 2.1485 1.5263 5.8137 25 6 0.9315 1.1691 6.2715 26 7 0.0224 1.3843 5.2783 27 6 -1.4165 1.1244 5.3674 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 1.3617 1.8096 -1.9453 34 1 2.0922 3.1803 -1.0757 35 1 5.2714 2.4849 -4.4696 36 1 1.1067 4.9452 2.3712 37 1 0.8780 4.4974 0.6531 38 1 -1.2639 5.2575 2.1194 39 1 -1.4175 3.8528 1.0117 40 1 -2.0496 2.8430 3.1080 41 1 -0.8920 3.8503 4.0378 42 1 2.7657 2.3386 3.8359 43 1 3.0779 1.4755 6.3616 44 1 0.7137 0.7829 7.2563 45 1 -1.9247 2.0159 5.7347 46 1 -1.8011 0.8677 4.3803 47 1 -1.5944 0.2961 6.0532 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336925763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:12 Heat of formation + Delta-G solvation = 1.193651 kcal Electronic energy + Delta-G solvation = -30274.818972 eV Core-core repulsion = 26393.402339 eV Total energy + Delta-G solvation = -3881.416633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23529 -38.27040 -36.66843 -36.16189 -35.20239 -32.89524 -32.58291 -30.97131 -30.58784 -30.22209 -27.15617 -26.92056 -26.34079 -22.93427 -22.70360 -21.64547 -21.46319 -20.21594 -19.50979 -18.22809 -17.63671 -17.24150 -16.75065 -16.49715 -15.92808 -15.29140 -15.20641 -14.31919 -14.16225 -14.08293 -13.85733 -13.57166 -13.26063 -13.17802 -13.04562 -12.97640 -12.74359 -12.56422 -12.41834 -12.19905 -12.08928 -11.94547 -11.73763 -11.40453 -11.36186 -11.26252 -11.20179 -11.18266 -11.03544 -10.82780 -10.78997 -10.43260 -10.35865 -10.16842 -9.54086 -9.00919 -8.58012 -8.36167 -8.11564 -7.77710 -6.06797 -4.05888 1.10683 2.35319 2.93929 3.26924 3.30127 3.31750 3.33865 3.48964 4.05460 4.35338 4.38953 4.51727 4.62794 4.66630 4.87679 4.98130 5.02693 5.09463 5.18198 5.20883 5.22459 5.38796 5.44804 5.55665 5.58239 5.65106 5.69814 5.72076 5.78853 5.81810 5.88044 5.94879 6.08676 6.18692 6.21909 6.38106 6.49665 6.52806 6.53525 6.63590 6.76632 7.11333 7.21944 7.37068 7.44684 7.49736 7.59746 8.50816 8.98497 9.52165 11.06881 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.004238 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.109725 B = 6605.126201 C = 6953.009971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.984 5.984 4 C 0.228 3.772 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.783 3.217 14 O -0.958 6.958 15 O -0.968 6.968 16 N -1.010 6.010 17 C 0.121 3.879 18 C -0.128 4.128 19 C -0.123 4.123 20 C 0.226 3.774 21 H 0.081 0.919 22 C -0.010 4.010 23 C -0.144 4.144 24 C -0.199 4.199 25 C -0.020 4.020 26 N -0.447 5.447 27 C 0.074 3.926 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.026 0.974 35 H 0.265 0.735 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.124 0.876 43 H 0.133 0.867 44 H 0.158 0.842 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.511 0.337 16.318 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.010 4.010 3 N -0.825 5.825 4 C 0.105 3.895 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.793 3.207 14 O -0.941 6.941 15 O -0.952 6.952 16 N -0.847 5.847 17 C -0.004 4.004 18 C -0.167 4.167 19 C -0.162 4.162 20 C 0.118 3.882 21 H 0.098 0.902 22 C -0.122 4.122 23 C -0.169 4.169 24 C -0.225 4.225 25 C -0.149 4.149 26 N -0.125 5.125 27 C -0.068 4.068 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.141 0.859 43 H 0.150 0.850 44 H 0.176 0.824 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.806 0.276 16.528 24.296 hybrid contribution -0.731 0.505 -0.771 1.176 sum -18.537 0.781 15.757 24.342 Atomic orbital electron populations 1.22321 0.97475 1.01494 1.01761 1.21170 0.92818 0.83004 1.04017 1.57602 1.81036 1.21394 1.22465 1.19399 0.98210 0.90780 0.81115 1.21377 1.00829 1.28899 1.05872 0.90437 1.24868 0.95064 0.96074 0.96937 1.69898 1.20522 1.43995 1.18891 0.86937 0.81823 0.82272 0.79208 1.19760 1.20951 1.18968 1.02074 0.72618 0.73511 0.72457 1.93643 1.58302 1.58075 1.84125 1.93663 1.82481 1.57707 1.61370 1.59412 1.41991 1.22765 1.60514 1.21958 0.94470 0.82582 1.01427 1.22784 0.95815 1.00011 0.98123 1.22745 0.97352 0.96698 0.99397 1.19429 0.87624 0.95902 0.85260 0.90181 1.20414 0.92795 1.08654 0.90323 1.20679 0.94146 1.05962 0.96115 1.20861 0.96891 1.08286 0.96413 1.21659 0.88980 1.10054 0.94217 1.43602 1.06712 1.50903 1.11323 1.21975 0.79011 1.02043 1.03764 0.93426 0.92096 0.92062 0.89438 0.90208 0.94970 0.95651 0.92535 0.91292 0.90256 0.90020 0.90385 0.90445 0.90439 0.85854 0.84953 0.82446 0.91268 0.90201 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.12 2.03 6.40 -4.04 -0.03 2.00 16 3 N -0.98 -20.33 2.83 -115.66 -0.33 -20.65 16 4 C 0.23 5.40 4.17 -5.20 -0.02 5.38 16 5 C -0.53 -15.27 9.94 -34.44 -0.34 -15.61 16 6 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 8 N -0.89 -27.69 13.96 55.43 0.77 -26.92 16 9 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 13 S 2.78 57.04 5.24 -107.50 -0.56 56.48 16 14 O -0.96 -23.54 16.69 -57.17 -0.95 -24.50 16 15 O -0.97 -20.63 12.25 -57.17 -0.70 -21.33 16 16 N -1.01 -15.76 3.15 -105.64 -0.33 -16.09 16 17 C 0.12 1.60 6.98 -2.53 -0.02 1.58 16 18 C -0.13 -1.19 7.08 -24.59 -0.17 -1.36 16 19 C -0.12 -1.12 5.47 -24.90 -0.14 -1.26 16 20 C 0.23 2.90 3.06 -68.10 -0.21 2.69 16 21 H 0.08 0.97 5.64 -51.93 -0.29 0.68 16 22 C -0.01 -0.15 5.72 -81.79 -0.47 -0.62 16 23 C -0.14 -2.50 8.04 -39.78 -0.32 -2.82 16 24 C -0.20 -2.99 10.86 -39.78 -0.43 -3.42 16 25 C -0.02 -0.24 11.43 -16.75 -0.19 -0.43 16 26 N -0.45 -5.26 3.15 -119.90 -0.38 -5.64 16 27 C 0.07 0.51 10.12 59.84 0.61 1.12 16 28 H 0.05 0.59 5.64 -51.93 -0.29 0.29 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.58 8.11 -51.94 -0.42 1.16 16 32 H 0.08 1.37 6.91 -51.93 -0.36 1.01 16 33 H 0.03 0.72 7.17 -51.93 -0.37 0.35 16 34 H 0.03 0.60 7.04 -51.93 -0.37 0.24 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.08 0.51 8.00 -51.93 -0.42 0.10 16 41 H 0.08 0.72 7.84 -51.93 -0.41 0.31 16 42 H 0.12 2.41 5.33 -52.49 -0.28 2.13 16 43 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 44 H 0.16 1.36 8.06 -52.48 -0.42 0.94 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.48 7.53 -51.93 -0.39 0.09 16 47 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -36.77 377.32 -10.33 -47.10 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.41 Total: 2.16 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -1.45 Total: -12.65 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -0.26 Total: -69.30 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.65 Total: -45.83 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Atomic # 16 Polarization: 57.04 SS G_CDS: -0.56 Total: 56.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.77 -10.33 -47.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336925763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.292 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds