Wall clock time and date at job start Wed Apr 1 2020 01:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47079 * 2 1 4 4 C 1.46501 * 119.99789 * 274.99562 * 3 2 1 5 5 C 1.50695 * 109.47066 * 275.00260 * 4 3 2 6 6 H 1.07994 * 120.00084 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99868 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99889 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99928 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46986 * 90.00305 * 9 7 5 11 11 H 1.48500 * 109.47582 * 210.00577 * 9 7 5 12 12 H 1.48504 * 109.47562 * 330.00572 * 9 7 5 13 13 S 1.65604 * 120.00194 * 94.99668 * 3 2 1 14 14 O 1.42097 * 106.40031 * 156.45940 * 13 3 2 15 15 O 1.42103 * 106.40145 * 23.54070 * 13 3 2 16 16 N 1.65596 * 107.21775 * 269.99961 * 13 3 2 17 17 C 1.47427 * 125.65057 * 269.95575 * 16 13 3 18 18 C 1.54902 * 104.83248 * 155.90972 * 17 16 13 19 19 C 1.55153 * 101.58379 * 37.00942 * 18 17 16 20 20 C 1.47024 * 125.64785 * 90.00217 * 16 13 3 21 21 H 1.09002 * 109.88151 * 300.59455 * 20 16 13 22 22 C 1.50700 * 109.88158 * 61.60317 * 20 16 13 23 23 C 1.34846 * 125.89251 * 355.04481 * 22 20 16 24 24 C 1.40894 * 107.41755 * 179.97438 * 23 22 20 25 25 C 1.34850 * 107.41649 * 359.97438 * 24 23 22 26 26 N 1.36342 * 125.88697 * 174.99790 * 22 20 16 27 27 C 1.46494 * 125.63973 * 0.05843 * 26 22 20 28 28 H 1.09005 * 109.47228 * 300.00291 * 1 2 3 29 29 H 1.08994 * 109.47131 * 59.99950 * 1 2 3 30 30 H 1.08999 * 109.47393 * 180.02562 * 1 2 3 31 31 H 1.08988 * 109.47426 * 239.99470 * 2 1 3 32 32 H 1.09004 * 109.46825 * 119.99365 * 2 1 3 33 33 H 1.09006 * 109.46847 * 35.00369 * 4 3 2 34 34 H 1.09005 * 109.46991 * 155.00087 * 4 3 2 35 35 H 0.97001 * 119.99521 * 179.97438 * 8 7 5 36 36 H 1.08998 * 110.36326 * 274.75140 * 17 16 13 37 37 H 1.08998 * 110.36265 * 37.06993 * 17 16 13 38 38 H 1.09004 * 111.00351 * 155.08800 * 18 17 16 39 39 H 1.09008 * 111.00475 * 278.90002 * 18 17 16 40 40 H 1.09004 * 110.72289 * 206.13113 * 19 18 17 41 41 H 1.09002 * 110.71884 * 82.85838 * 19 18 17 42 42 H 1.07995 * 126.29432 * 359.94132 * 23 22 20 43 43 H 1.08004 * 126.29068 * 180.02562 * 24 23 22 44 44 H 1.08006 * 125.89071 * 180.26089 * 25 24 23 45 45 H 1.08996 * 109.47494 * 270.00282 * 27 26 22 46 46 H 1.09006 * 109.47199 * 30.00109 * 27 26 22 47 47 H 1.09003 * 109.47307 * 149.99496 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1724 1.1116 -1.3835 7 6 3.8530 2.3612 -3.0844 8 7 5.0196 2.0824 -3.6237 9 14 2.6814 3.5329 -3.9468 10 1 2.9451 4.9213 -3.4908 11 1 2.8865 3.4466 -5.4150 12 1 1.2809 3.1622 -3.6201 13 16 2.4121 2.1203 1.4287 14 8 3.3283 3.1571 1.1049 15 8 2.7095 1.0800 2.3500 16 7 1.0431 2.8643 1.9893 17 6 0.6298 4.2462 1.6842 18 6 -0.9060 4.2546 1.8865 19 6 -1.0646 3.3100 3.1071 20 6 0.0388 2.2565 2.8746 21 1 -0.3849 1.3706 2.4014 22 6 0.6741 1.8811 4.1886 23 6 1.9848 1.9793 4.4897 24 6 2.1485 1.5263 5.8137 25 6 0.9315 1.1691 6.2715 26 7 0.0224 1.3843 5.2783 27 6 -1.4165 1.1244 5.3674 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8898 32 1 1.8933 -0.5138 0.8901 33 1 1.3617 1.8096 -1.9453 34 1 2.0922 3.1803 -1.0757 35 1 5.2714 2.4849 -4.4696 36 1 1.1067 4.9452 2.3712 37 1 0.8780 4.4974 0.6531 38 1 -1.2639 5.2575 2.1194 39 1 -1.4175 3.8528 1.0117 40 1 -2.0496 2.8430 3.1080 41 1 -0.8920 3.8503 4.0378 42 1 2.7657 2.3386 3.8359 43 1 3.0779 1.4755 6.3616 44 1 0.7137 0.7829 7.2563 45 1 -1.9247 2.0159 5.7347 46 1 -1.8011 0.8677 4.3803 47 1 -1.5944 0.2961 6.0532 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336925763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:11 Heat of formation + Delta-G solvation = -25.429278 kcal Electronic energy + Delta-G solvation = -30275.973428 eV Core-core repulsion = 26393.402339 eV Total energy + Delta-G solvation = -3882.571089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.21729 -39.25071 -38.37182 -37.79283 -36.92792 -34.71133 -33.74909 -32.01158 -31.77698 -31.54217 -28.97859 -27.91827 -27.07648 -24.64650 -23.80990 -23.19222 -22.33307 -21.29111 -20.62137 -19.45220 -19.25627 -18.93345 -18.38630 -17.75453 -17.36753 -16.60426 -16.12894 -15.99500 -15.66119 -15.10702 -14.99336 -14.78261 -14.63679 -14.33689 -14.30658 -14.10925 -13.89602 -13.87759 -13.62948 -13.50492 -13.44129 -13.12781 -13.01660 -12.91664 -12.81099 -12.62566 -12.51910 -12.46387 -12.17604 -12.14202 -12.05299 -11.97989 -11.75657 -11.70894 -11.49458 -10.80319 -10.19590 -9.82443 -9.36467 -8.82161 -8.30790 -6.37419 -0.46247 1.34488 1.37092 1.39944 1.48222 1.93333 2.15037 2.17347 2.34340 2.60777 3.02515 3.21434 3.57242 3.69140 3.82707 3.94299 4.07949 4.15885 4.20451 4.36931 4.38262 4.40745 4.54544 4.59163 4.64034 4.70850 4.76386 4.77557 4.81174 4.82291 4.90099 4.95615 4.98927 5.00714 5.03866 5.13193 5.27760 5.36106 5.42066 5.43590 5.46677 5.47768 5.52206 5.82516 6.09371 6.28930 6.32618 6.63371 6.64981 7.25538 8.87202 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017863 B = 0.004238 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.109725 B = 6605.126201 C = 6953.009971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.107 3.893 3 N -0.992 5.992 4 C 0.239 3.761 5 C -0.546 4.546 6 H 0.022 0.978 7 C 0.005 3.995 8 N -0.949 5.949 9 Si 0.946 3.054 10 H -0.268 1.268 11 H -0.277 1.277 12 H -0.224 1.224 13 S 2.795 3.205 14 O -1.014 7.014 15 O -0.987 6.987 16 N -1.005 6.005 17 C 0.104 3.896 18 C -0.114 4.114 19 C -0.110 4.110 20 C 0.216 3.784 21 H 0.095 0.905 22 C -0.009 4.009 23 C -0.199 4.199 24 C -0.240 4.240 25 C -0.001 4.001 26 N -0.439 5.439 27 C 0.061 3.939 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.029 0.971 35 H 0.268 0.732 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.130 0.870 44 H 0.199 0.801 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.781 0.882 17.250 30.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.832 5.832 4 C 0.114 3.886 5 C -0.585 4.585 6 H 0.040 0.960 7 C -0.192 4.192 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.194 1.194 11 H -0.202 1.202 12 H -0.147 1.147 13 S 2.806 3.194 14 O -0.998 6.998 15 O -0.971 6.971 16 N -0.845 5.845 17 C -0.020 4.020 18 C -0.153 4.153 19 C -0.149 4.149 20 C 0.109 3.891 21 H 0.112 0.888 22 C -0.123 4.123 23 C -0.224 4.224 24 C -0.265 4.265 25 C -0.131 4.131 26 N -0.116 5.116 27 C -0.078 4.078 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.148 0.852 44 H 0.216 0.784 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.108 0.781 17.488 29.793 hybrid contribution 1.320 0.247 -0.907 1.620 sum -22.788 1.028 16.581 28.201 Atomic orbital electron populations 1.22227 0.93381 1.03609 1.02647 1.21389 0.96192 0.81214 1.03041 1.57556 1.81677 1.22638 1.21377 1.19156 0.95753 0.91269 0.82402 1.21700 1.02586 1.28035 1.06227 0.96001 1.26001 0.97224 0.98187 0.97802 1.70084 1.23250 1.45883 1.19726 0.85760 0.80953 0.78958 0.77676 1.19358 1.20206 1.14656 1.01314 0.73106 0.72749 0.72212 1.93555 1.61471 1.59786 1.84984 1.93635 1.83375 1.58462 1.61585 1.58902 1.41354 1.23717 1.60549 1.22288 0.98073 0.80947 1.00734 1.22794 0.91883 1.01789 0.98795 1.22783 0.97465 0.95418 0.99243 1.19880 0.87631 0.97735 0.83820 0.88792 1.20544 0.92115 1.07911 0.91684 1.20632 0.95144 1.09366 0.97247 1.21055 0.98678 1.10592 0.96188 1.22158 0.87858 1.07659 0.95446 1.43910 1.08707 1.49029 1.09917 1.22435 0.75664 1.04177 1.05569 0.91921 0.91713 0.89321 0.91012 0.90749 0.92381 0.95310 0.92288 0.91765 0.91371 0.87317 0.88974 0.86271 0.90367 0.89774 0.85204 0.78433 0.88841 0.88727 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 10.24 71.98 0.74 -3.10 16 2 C 0.11 3.76 6.40 86.38 0.55 4.31 16 3 N -0.99 -42.01 2.83 -519.84 -1.47 -43.48 16 4 C 0.24 11.37 4.17 85.63 0.36 11.73 16 5 C -0.55 -33.02 9.94 25.60 0.25 -32.77 16 6 H 0.02 1.50 8.06 -2.91 -0.02 1.48 16 7 C 0.01 0.33 5.47 84.66 0.46 0.79 16 8 N -0.95 -61.58 13.96 21.45 0.30 -61.28 16 9 Si 0.95 43.17 27.47 68.60 1.88 45.05 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.22 -8.71 6.54 99.48 0.65 -8.06 16 13 S 2.79 120.75 5.24 -56.49 -0.30 120.45 16 14 O -1.01 -53.79 16.69 -128.00 -2.14 -55.93 16 15 O -0.99 -45.07 12.25 -128.00 -1.57 -46.64 16 16 N -1.00 -30.99 3.15 -488.13 -1.54 -32.53 16 17 C 0.10 2.63 6.98 86.85 0.61 3.23 16 18 C -0.11 -1.59 7.08 31.98 0.23 -1.37 16 19 C -0.11 -1.46 5.47 31.78 0.17 -1.28 16 20 C 0.22 4.99 3.06 44.59 0.14 5.13 16 21 H 0.09 1.91 5.64 -2.39 -0.01 1.89 16 22 C -0.01 -0.26 5.72 41.08 0.24 -0.02 16 23 C -0.20 -7.24 8.04 22.14 0.18 -7.06 16 24 C -0.24 -7.45 10.86 22.14 0.24 -7.21 16 25 C 0.00 -0.01 11.43 83.21 0.95 0.94 16 26 N -0.44 -8.93 3.15 -533.26 -1.68 -10.61 16 27 C 0.06 0.51 10.12 127.77 1.29 1.80 16 28 H 0.06 1.31 5.64 -2.38 -0.01 1.29 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 2.69 8.11 -2.39 -0.02 2.67 16 32 H 0.07 2.65 6.91 -2.38 -0.02 2.63 16 33 H 0.06 2.47 7.17 -2.38 -0.02 2.45 16 34 H 0.03 1.36 7.04 -2.38 -0.02 1.34 16 35 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 36 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.12 0.68 8.00 -2.38 -0.02 0.67 16 41 H 0.08 1.08 7.84 -2.39 -0.02 1.06 16 42 H 0.08 3.65 5.33 -2.91 -0.02 3.64 16 43 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 44 H 0.20 2.64 8.06 -2.91 -0.02 2.61 16 45 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.09 0.56 7.53 -2.38 -0.02 0.54 16 47 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -90.73 377.32 0.80 -89.93 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.90 Total: 19.90 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 6.41 Total: -24.88 kcal Atomic # 7 Polarization: -143.50 SS G_CDS: -4.39 Total: -147.89 kcal Atomic # 8 Polarization: -98.86 SS G_CDS: -3.70 Total: -102.56 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.05 kcal Atomic # 16 Polarization: 120.75 SS G_CDS: -0.30 Total: 120.45 kcal Total: -90.73 0.80 -89.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336925763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.500 kcal (2) G-P(sol) polarization free energy of solvation -90.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds