Wall clock time and date at job start Wed Apr 1 2020 01:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47037 * 2 1 4 4 C 1.46497 * 120.00318 * 275.00384 * 3 2 1 5 5 C 1.50701 * 109.47157 * 280.24511 * 4 3 2 6 6 H 1.08000 * 119.99851 * 4.80136 * 5 4 3 7 7 C 1.37877 * 120.00161 * 184.80739 * 5 4 3 8 8 N 1.31515 * 120.00158 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00230 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46936 * 59.99500 * 9 7 5 11 11 H 1.48500 * 109.47448 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47010 * 299.99597 * 9 7 5 13 13 S 1.65598 * 119.99912 * 95.00247 * 3 2 1 14 14 O 1.42102 * 106.40364 * 330.04619 * 13 3 2 15 15 O 1.42102 * 106.40242 * 197.12796 * 13 3 2 16 16 N 1.65597 * 107.21622 * 83.58598 * 13 3 2 17 17 C 1.46497 * 120.00451 * 65.55312 * 16 13 3 18 18 C 1.52993 * 109.47555 * 165.95119 * 17 16 13 19 19 N 1.46497 * 109.47555 * 179.97438 * 18 17 16 20 20 C 1.46499 * 120.00310 * 270.00339 * 19 18 17 21 21 C 1.39683 * 120.00199 * 89.99533 * 19 18 17 22 22 C 1.38908 * 120.07527 * 180.02562 * 21 19 18 23 23 C 1.38107 * 119.92474 * 179.97438 * 22 21 19 24 24 C 1.38286 * 120.07225 * 0.02562 * 23 22 21 25 25 C 1.38283 * 120.14943 * 0.27855 * 24 23 22 26 26 C 1.38101 * 120.07868 * 359.44188 * 25 24 23 27 27 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46818 * 299.99666 * 1 2 3 29 29 H 1.08995 * 109.47570 * 60.00195 * 1 2 3 30 30 H 1.08999 * 109.46818 * 240.00334 * 2 1 3 31 31 H 1.08998 * 109.47379 * 120.00297 * 2 1 3 32 32 H 1.09006 * 109.47536 * 40.23928 * 4 3 2 33 33 H 1.09003 * 109.47831 * 160.23922 * 4 3 2 34 34 H 0.96993 * 120.00391 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99538 * 245.54799 * 16 13 3 36 36 H 1.09003 * 109.46994 * 45.94663 * 17 16 13 37 37 H 1.08999 * 109.47234 * 285.95569 * 17 16 13 38 38 H 1.09003 * 109.47342 * 59.99757 * 18 17 16 39 39 H 1.09005 * 109.47165 * 300.00013 * 18 17 16 40 40 H 1.09003 * 109.46907 * 269.99962 * 20 19 18 41 41 H 1.08998 * 109.47024 * 29.99448 * 20 19 18 42 42 H 1.09003 * 109.47468 * 149.99266 * 20 19 18 43 43 H 1.07994 * 120.03723 * 0.02562 * 22 21 19 44 44 H 1.07995 * 119.96579 * 180.02562 * 23 22 21 45 45 H 1.08002 * 119.92298 * 179.97438 * 24 23 22 46 46 H 1.08003 * 119.96160 * 179.70632 * 25 24 23 47 47 H 1.07998 * 120.04650 * 180.27439 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1087 -1.2638 5 6 3.4359 1.6913 -1.9450 6 1 4.0404 0.9023 -1.5224 7 6 3.8335 2.3167 -3.1077 8 7 3.0973 3.2772 -3.6227 9 14 5.4177 1.7998 -3.9518 10 1 5.3336 0.3652 -4.3265 11 1 5.6178 2.6193 -5.1739 12 1 6.5609 2.0033 -3.0261 13 16 2.4122 2.1201 1.4287 14 8 1.5760 1.5437 2.4225 15 8 2.4531 3.5151 1.1610 16 7 3.9613 1.6700 1.8025 17 6 5.0734 2.0924 0.9475 18 6 6.3967 1.8574 1.6785 19 7 7.5088 2.2791 0.8233 20 6 8.1293 1.3224 -0.0964 21 6 7.9775 3.5935 0.8846 22 6 9.0316 3.9952 0.0739 23 6 9.4922 5.2957 0.1367 24 6 8.9056 6.1974 1.0057 25 6 7.8602 5.7991 1.8185 26 6 7.3909 4.5018 1.7567 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.3106 1.8806 -1.9102 33 1 2.1854 3.1802 -1.0653 34 1 3.3767 3.7169 -4.4408 35 1 4.1324 1.1268 2.5877 36 1 4.9703 3.1522 0.7143 37 1 5.0612 1.5143 0.0234 38 1 6.4998 0.7976 1.9117 39 1 6.4090 2.4355 2.6026 40 1 8.9501 0.8131 0.4085 41 1 7.3873 0.5897 -0.4136 42 1 8.5122 1.8526 -0.9685 43 1 9.4898 3.2916 -0.6052 44 1 10.3114 5.6088 -0.4935 45 1 9.2680 7.2137 1.0531 46 1 7.4074 6.5046 2.4995 47 1 6.5715 4.1925 2.3887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336926932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:43 Heat of formation + Delta-G solvation = -41.513763 kcal Electronic energy + Delta-G solvation = -29131.209703 eV Core-core repulsion = 25247.941138 eV Total energy + Delta-G solvation = -3883.268565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.50350 -36.82785 -36.55989 -36.03539 -35.20356 -34.49542 -32.72777 -30.97419 -29.93647 -29.87410 -28.60331 -26.65108 -25.40678 -23.17956 -22.96384 -21.94138 -21.68768 -20.50471 -18.82780 -17.63259 -17.15550 -16.82897 -16.47294 -15.94768 -15.48210 -15.35641 -15.13599 -14.69672 -14.44949 -14.06359 -13.87096 -13.61414 -13.52759 -13.26414 -13.15957 -12.92111 -12.45696 -12.17819 -12.07907 -11.97196 -11.95512 -11.69364 -11.54071 -11.39742 -11.34865 -11.28598 -11.23887 -11.06843 -10.97942 -10.63236 -10.53453 -10.39079 -10.05978 -9.84155 -9.75569 -9.02240 -8.74773 -8.51641 -8.07859 -7.17336 -6.13035 -4.19762 1.27587 1.61020 1.78115 3.10530 3.21587 3.26401 3.28928 3.61882 4.07114 4.17113 4.32686 4.90043 4.98028 4.99913 5.14134 5.20622 5.22630 5.31009 5.33346 5.39117 5.47870 5.57532 5.61568 5.69333 5.74535 5.78646 5.84474 5.88092 5.95981 6.07887 6.13007 6.22005 6.32304 6.38031 6.50426 6.64909 6.66565 6.69999 6.79513 7.01097 7.23550 7.34700 7.37835 7.43490 7.61646 7.67679 7.83326 8.13595 8.83197 9.45589 10.94942 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.004810 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.097416 B = 5819.846796 C = 7311.923536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.243 3.757 5 C -0.539 4.539 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.273 1.273 13 S 2.785 3.215 14 O -1.001 7.001 15 O -0.976 6.976 16 N -1.130 6.130 17 C 0.097 3.903 18 C 0.120 3.880 19 N -0.626 5.626 20 C 0.093 3.907 21 C 0.220 3.780 22 C -0.198 4.198 23 C -0.076 4.076 24 C -0.183 4.183 25 C -0.073 4.073 26 C -0.194 4.194 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.405 0.595 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.220 -3.752 9.248 13.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.121 3.879 5 C -0.578 4.578 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.793 3.207 14 O -0.985 6.985 15 O -0.960 6.960 16 N -0.889 5.889 17 C -0.031 4.031 18 C -0.005 4.005 19 N -0.336 5.336 20 C -0.050 4.050 21 C 0.118 3.882 22 C -0.220 4.220 23 C -0.094 4.094 24 C -0.204 4.204 25 C -0.091 4.091 26 C -0.216 4.216 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.237 0.763 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.137 0.863 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.554 -3.095 9.395 13.078 hybrid contribution 1.131 -0.788 -0.691 1.542 sum 9.686 -3.883 8.704 13.589 Atomic orbital electron populations 1.22212 0.96936 1.01324 1.02522 1.20940 0.93690 0.82896 1.01900 1.57721 1.78539 1.22935 1.24110 1.19213 0.97174 0.92608 0.78868 1.21424 1.07514 1.19973 1.08869 0.92086 1.24933 0.96964 0.94716 0.97049 1.69910 1.38053 1.23490 1.20901 0.86712 0.84003 0.78441 0.79218 1.20329 1.21239 1.19798 1.01764 0.72534 0.73758 0.72650 1.93550 1.65365 1.79861 1.59705 1.93586 1.86434 1.30851 1.85120 1.55950 1.25256 1.69826 1.37879 1.21860 0.84828 1.02295 0.94073 1.21580 0.85185 1.00437 0.93327 1.46279 1.35648 1.07984 1.43728 1.21668 0.97853 0.92563 0.92950 1.17848 0.92459 0.84216 0.93656 1.20671 1.00487 0.97489 1.03376 1.20838 0.98565 0.92752 0.97278 1.20855 0.99743 0.99552 1.00201 1.20877 0.95463 0.95062 0.97744 1.20747 1.03701 0.94005 1.03153 0.92457 0.92465 0.92082 0.90207 0.92266 0.94844 0.92604 0.92506 0.76328 0.89996 0.89361 0.90459 0.90335 0.93527 0.91138 0.91313 0.86228 0.86533 0.86781 0.86343 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.13 2.23 6.02 -4.04 -0.02 2.21 16 3 N -0.99 -19.89 2.84 -115.67 -0.33 -20.22 16 4 C 0.24 5.92 5.46 -5.19 -0.03 5.89 16 5 C -0.54 -13.51 8.47 -34.44 -0.29 -13.80 16 6 H 0.06 1.45 6.53 -52.49 -0.34 1.11 16 7 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 9 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 S 2.79 54.11 6.07 -107.50 -0.65 53.46 16 14 O -1.00 -19.97 17.17 -57.17 -0.98 -20.95 16 15 O -0.98 -22.78 16.01 -57.17 -0.92 -23.70 16 16 N -1.13 -17.33 6.06 -10.62 -0.06 -17.40 16 17 C 0.10 1.58 6.54 -4.05 -0.03 1.55 16 18 C 0.12 1.53 5.30 -4.05 -0.02 1.51 16 19 N -0.63 -8.68 3.01 -179.62 -0.54 -9.22 16 20 C 0.09 1.13 10.19 59.85 0.61 1.74 16 21 C 0.22 3.28 6.55 -83.78 -0.55 2.73 16 22 C -0.20 -2.78 9.21 -39.38 -0.36 -3.14 16 23 C -0.08 -0.98 10.04 -39.61 -0.40 -1.37 16 24 C -0.18 -2.35 10.04 -39.55 -0.40 -2.75 16 25 C -0.07 -0.98 10.04 -39.61 -0.40 -1.37 16 26 C -0.19 -2.83 9.21 -39.38 -0.36 -3.19 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.93 7.96 -51.93 -0.41 0.52 16 29 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.08 1.34 8.08 -51.93 -0.42 0.93 16 31 H 0.06 0.87 7.79 -51.93 -0.40 0.47 16 32 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.06 1.53 6.77 -51.93 -0.35 1.18 16 34 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.41 4.81 8.65 -34.46 -0.30 4.51 16 36 H 0.08 1.58 7.76 -51.93 -0.40 1.18 16 37 H 0.09 1.60 5.88 -51.93 -0.31 1.30 16 38 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 39 H 0.08 0.92 6.20 -51.93 -0.32 0.59 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 42 H 0.07 0.87 6.20 -51.93 -0.32 0.55 16 43 H 0.12 1.51 6.14 -52.49 -0.32 1.19 16 44 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 47 H 0.12 1.70 6.14 -52.49 -0.32 1.38 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -32.08 393.28 -10.96 -43.04 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.16 Total: 8.94 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.97 Total: -10.62 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -0.20 Total: -71.18 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -1.90 Total: -44.65 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 54.11 SS G_CDS: -0.65 Total: 53.46 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.08 -10.96 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336926932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.528 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds