Wall clock time and date at job start Wed Apr 1 2020 01:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47037 * 2 1 4 4 C 1.46497 * 120.00318 * 275.00384 * 3 2 1 5 5 C 1.50701 * 109.47157 * 280.24511 * 4 3 2 6 6 H 1.08000 * 119.99851 * 4.80136 * 5 4 3 7 7 C 1.37877 * 120.00161 * 184.80739 * 5 4 3 8 8 N 1.31515 * 120.00158 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00230 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46936 * 59.99500 * 9 7 5 11 11 H 1.48500 * 109.47448 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47010 * 299.99597 * 9 7 5 13 13 S 1.65598 * 119.99912 * 95.00247 * 3 2 1 14 14 O 1.42102 * 106.40364 * 330.04619 * 13 3 2 15 15 O 1.42102 * 106.40242 * 197.12796 * 13 3 2 16 16 N 1.65597 * 107.21622 * 83.58598 * 13 3 2 17 17 C 1.46497 * 120.00451 * 65.55312 * 16 13 3 18 18 C 1.52993 * 109.47555 * 165.95119 * 17 16 13 19 19 N 1.46497 * 109.47555 * 179.97438 * 18 17 16 20 20 C 1.46499 * 120.00310 * 270.00339 * 19 18 17 21 21 C 1.39683 * 120.00199 * 89.99533 * 19 18 17 22 22 C 1.38908 * 120.07527 * 180.02562 * 21 19 18 23 23 C 1.38107 * 119.92474 * 179.97438 * 22 21 19 24 24 C 1.38286 * 120.07225 * 0.02562 * 23 22 21 25 25 C 1.38283 * 120.14943 * 0.27855 * 24 23 22 26 26 C 1.38101 * 120.07868 * 359.44188 * 25 24 23 27 27 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46818 * 299.99666 * 1 2 3 29 29 H 1.08995 * 109.47570 * 60.00195 * 1 2 3 30 30 H 1.08999 * 109.46818 * 240.00334 * 2 1 3 31 31 H 1.08998 * 109.47379 * 120.00297 * 2 1 3 32 32 H 1.09006 * 109.47536 * 40.23928 * 4 3 2 33 33 H 1.09003 * 109.47831 * 160.23922 * 4 3 2 34 34 H 0.96993 * 120.00391 * 180.02562 * 8 7 5 35 35 H 0.97004 * 119.99538 * 245.54799 * 16 13 3 36 36 H 1.09003 * 109.46994 * 45.94663 * 17 16 13 37 37 H 1.08999 * 109.47234 * 285.95569 * 17 16 13 38 38 H 1.09003 * 109.47342 * 59.99757 * 18 17 16 39 39 H 1.09005 * 109.47165 * 300.00013 * 18 17 16 40 40 H 1.09003 * 109.46907 * 269.99962 * 20 19 18 41 41 H 1.08998 * 109.47024 * 29.99448 * 20 19 18 42 42 H 1.09003 * 109.47468 * 149.99266 * 20 19 18 43 43 H 1.07994 * 120.03723 * 0.02562 * 22 21 19 44 44 H 1.07995 * 119.96579 * 180.02562 * 23 22 21 45 45 H 1.08002 * 119.92298 * 179.97438 * 24 23 22 46 46 H 1.08003 * 119.96160 * 179.70632 * 25 24 23 47 47 H 1.07998 * 120.04650 * 180.27439 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1087 -1.2638 5 6 3.4359 1.6913 -1.9450 6 1 4.0404 0.9023 -1.5224 7 6 3.8335 2.3167 -3.1077 8 7 3.0973 3.2772 -3.6227 9 14 5.4177 1.7998 -3.9518 10 1 5.3336 0.3652 -4.3265 11 1 5.6178 2.6193 -5.1739 12 1 6.5609 2.0033 -3.0261 13 16 2.4122 2.1201 1.4287 14 8 1.5760 1.5437 2.4225 15 8 2.4531 3.5151 1.1610 16 7 3.9613 1.6700 1.8025 17 6 5.0734 2.0924 0.9475 18 6 6.3967 1.8574 1.6785 19 7 7.5088 2.2791 0.8233 20 6 8.1293 1.3224 -0.0964 21 6 7.9775 3.5935 0.8846 22 6 9.0316 3.9952 0.0739 23 6 9.4922 5.2957 0.1367 24 6 8.9056 6.1974 1.0057 25 6 7.8602 5.7991 1.8185 26 6 7.3909 4.5018 1.7567 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.3106 1.8806 -1.9102 33 1 2.1854 3.1802 -1.0653 34 1 3.3767 3.7169 -4.4408 35 1 4.1324 1.1268 2.5877 36 1 4.9703 3.1522 0.7143 37 1 5.0612 1.5143 0.0234 38 1 6.4998 0.7976 1.9117 39 1 6.4090 2.4355 2.6026 40 1 8.9501 0.8131 0.4085 41 1 7.3873 0.5897 -0.4136 42 1 8.5122 1.8526 -0.9685 43 1 9.4898 3.2916 -0.6052 44 1 10.3114 5.6088 -0.4935 45 1 9.2680 7.2137 1.0531 46 1 7.4074 6.5046 2.4995 47 1 6.5715 4.1925 2.3887 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336926932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:42 Heat of formation + Delta-G solvation = -62.903096 kcal Electronic energy + Delta-G solvation = -29132.137214 eV Core-core repulsion = 25247.941138 eV Total energy + Delta-G solvation = -3884.196076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.51951 -38.35308 -37.83563 -37.62841 -36.89783 -35.73520 -34.66883 -31.99798 -31.50941 -30.91581 -29.67144 -28.49991 -26.48180 -24.95326 -24.11572 -23.27472 -22.95318 -21.55911 -20.34857 -18.81465 -18.64076 -18.48754 -18.25487 -17.40505 -16.82820 -16.52533 -16.34942 -16.17263 -15.77059 -15.43346 -15.02575 -14.82440 -14.80469 -14.59960 -14.53532 -14.23656 -13.79226 -13.68803 -13.49883 -13.42971 -13.28351 -13.16560 -13.00933 -12.93808 -12.76329 -12.72545 -12.64428 -12.48738 -12.24385 -12.22718 -12.08266 -11.76847 -11.64148 -11.56424 -10.80725 -10.55424 -10.39919 -9.78903 -9.78217 -8.20515 -8.14963 -6.28183 -0.30618 0.57819 0.74837 1.41870 1.44509 1.50836 1.89612 2.27802 2.43492 2.64987 3.03780 3.17637 3.45869 3.89623 3.95449 4.00985 4.02310 4.16228 4.32704 4.34356 4.42120 4.46521 4.50839 4.59583 4.65322 4.66147 4.70736 4.75126 4.81487 4.91818 4.93606 4.99807 5.13628 5.16757 5.19779 5.29089 5.41783 5.42433 5.52810 5.64653 5.77908 5.78243 5.91377 6.02611 6.12234 6.22612 6.36931 6.58390 6.82736 7.41445 8.93019 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.004810 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.097416 B = 5819.846796 C = 7311.923536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.995 5.995 4 C 0.259 3.741 5 C -0.532 4.532 6 H 0.077 0.923 7 C 0.011 3.989 8 N -0.930 5.930 9 Si 0.950 3.050 10 H -0.263 1.263 11 H -0.295 1.295 12 H -0.257 1.257 13 S 2.798 3.202 14 O -1.003 7.003 15 O -1.020 7.020 16 N -1.109 6.109 17 C 0.104 3.896 18 C 0.125 3.875 19 N -0.632 5.632 20 C 0.088 3.912 21 C 0.200 3.800 22 C -0.213 4.213 23 C -0.081 4.081 24 C -0.190 4.190 25 C -0.085 4.085 26 C -0.215 4.215 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.015 0.985 33 H 0.017 0.983 34 H 0.263 0.737 35 H 0.425 0.575 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.131 0.869 44 H 0.141 0.859 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.214 -5.738 10.140 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.135 3.865 5 C -0.571 4.571 6 H 0.095 0.905 7 C -0.188 4.188 8 N -0.570 5.570 9 Si 0.775 3.225 10 H -0.188 1.188 11 H -0.222 1.222 12 H -0.182 1.182 13 S 2.806 3.194 14 O -0.987 6.987 15 O -1.003 7.003 16 N -0.873 5.873 17 C -0.024 4.024 18 C 0.000 4.000 19 N -0.343 5.343 20 C -0.054 4.054 21 C 0.099 3.901 22 C -0.235 4.235 23 C -0.100 4.100 24 C -0.210 4.210 25 C -0.103 4.103 26 C -0.238 4.238 27 H 0.110 0.890 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.033 0.967 33 H 0.035 0.965 34 H 0.072 0.928 35 H 0.262 0.738 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.148 0.852 44 H 0.159 0.841 45 H 0.154 0.846 46 H 0.152 0.848 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.543 -5.130 10.329 15.626 hybrid contribution 0.470 -0.159 -0.909 1.036 sum 11.014 -5.289 9.420 15.428 Atomic orbital electron populations 1.22203 0.96116 1.03198 1.01301 1.21250 0.94522 0.81126 1.03386 1.57608 1.79300 1.24166 1.22560 1.18728 0.96541 0.90965 0.80247 1.21719 1.07427 1.19582 1.08382 0.90519 1.25802 1.00239 0.94749 0.98039 1.70069 1.40177 1.25221 1.21487 0.85716 0.80421 0.78457 0.77887 1.18804 1.22164 1.18165 1.01178 0.73185 0.72772 0.72248 1.93538 1.66110 1.79598 1.59474 1.93537 1.87255 1.33891 1.85668 1.55441 1.23553 1.69811 1.38472 1.21749 0.86797 0.99620 0.94242 1.21607 0.82864 1.02593 0.92922 1.46438 1.35681 1.07985 1.44199 1.21800 0.98587 0.92226 0.92828 1.18101 0.93063 0.84846 0.94122 1.20944 1.00602 0.98350 1.03609 1.21206 0.99005 0.92417 0.97328 1.21195 0.99364 1.00709 0.99725 1.21186 0.95800 0.95074 0.98252 1.20921 1.04189 0.94810 1.03839 0.89046 0.93376 0.93605 0.90013 0.89375 0.96652 0.96458 0.92844 0.73848 0.93724 0.90978 0.87183 0.89267 0.91030 0.91053 0.92047 0.85155 0.84120 0.84563 0.84812 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.09 10.24 71.98 0.74 -4.35 16 2 C 0.12 3.94 6.02 86.38 0.52 4.46 16 3 N -1.00 -39.99 2.84 -519.85 -1.48 -41.47 16 4 C 0.26 13.00 5.46 85.63 0.47 13.47 16 5 C -0.53 -26.86 8.47 25.60 0.22 -26.64 16 6 H 0.08 3.56 6.53 -2.91 -0.02 3.54 16 7 C 0.01 0.59 5.46 84.65 0.46 1.05 16 8 N -0.93 -54.30 13.29 21.45 0.28 -54.01 16 9 Si 0.95 41.02 29.54 68.60 2.03 43.04 16 10 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 11 H -0.30 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 13 S 2.80 108.56 6.07 -56.49 -0.34 108.22 16 14 O -1.00 -38.87 17.17 -128.00 -2.20 -41.06 16 15 O -1.02 -49.31 16.01 -128.00 -2.05 -51.36 16 16 N -1.11 -32.59 6.06 -187.50 -1.14 -33.73 16 17 C 0.10 3.32 6.54 86.38 0.57 3.89 16 18 C 0.13 2.94 5.30 86.38 0.46 3.40 16 19 N -0.63 -16.51 3.01 -722.19 -2.17 -18.68 16 20 C 0.09 1.94 10.19 127.77 1.30 3.24 16 21 C 0.20 5.80 6.55 38.21 0.25 6.05 16 22 C -0.21 -5.70 9.21 22.40 0.21 -5.49 16 23 C -0.08 -1.96 10.04 22.25 0.22 -1.74 16 24 C -0.19 -4.60 10.04 22.29 0.22 -4.37 16 25 C -0.08 -2.22 10.04 22.25 0.22 -2.00 16 26 C -0.22 -6.25 9.21 22.40 0.21 -6.04 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 28 H 0.05 1.52 7.96 -2.39 -0.02 1.50 16 29 H 0.04 1.49 8.10 -2.39 -0.02 1.47 16 30 H 0.08 2.61 8.08 -2.39 -0.02 2.59 16 31 H 0.09 2.33 7.79 -2.39 -0.02 2.32 16 32 H 0.02 0.82 8.10 -2.38 -0.02 0.80 16 33 H 0.02 1.01 6.77 -2.39 -0.02 0.99 16 34 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 35 H 0.43 9.00 8.65 -96.75 -0.84 8.16 16 36 H 0.04 1.77 7.76 -2.39 -0.02 1.75 16 37 H 0.07 2.55 5.88 -2.39 -0.01 2.53 16 38 H 0.11 1.89 8.07 -2.39 -0.02 1.87 16 39 H 0.09 1.92 6.20 -2.38 -0.01 1.91 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.54 8.07 -2.39 -0.02 1.52 16 42 H 0.06 1.43 6.20 -2.39 -0.01 1.41 16 43 H 0.13 3.08 6.14 -2.91 -0.02 3.06 16 44 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 45 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 46 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 47 H 0.12 3.39 6.14 -2.91 -0.02 3.37 16 Total: -1.00 -71.27 393.28 -0.86 -72.14 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.14 Total: 32.00 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 6.06 Total: -15.08 kcal Atomic # 7 Polarization: -143.39 SS G_CDS: -4.50 Total: -147.89 kcal Atomic # 8 Polarization: -88.18 SS G_CDS: -4.25 Total: -92.42 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 108.56 SS G_CDS: -0.34 Total: 108.22 kcal Total: -71.27 -0.86 -72.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336926932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.233 kcal (2) G-P(sol) polarization free energy of solvation -71.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds