Wall clock time and date at job start Wed Apr 1 2020 01:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46937 * 2 1 4 4 C 1.46500 * 119.99800 * 274.60920 * 3 2 1 5 5 C 1.50699 * 109.47113 * 280.67670 * 4 3 2 6 6 H 1.08002 * 120.00143 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00111 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00161 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00033 * 359.97438 * 7 5 4 10 10 H 1.48512 * 109.46950 * 90.00163 * 9 7 5 11 11 H 1.48498 * 109.47626 * 210.00175 * 9 7 5 12 12 H 1.48506 * 109.47189 * 330.00582 * 9 7 5 13 13 S 1.65602 * 120.00197 * 94.61055 * 3 2 1 14 14 O 1.42105 * 106.39928 * 173.52758 * 13 3 2 15 15 O 1.42098 * 106.40009 * 40.61100 * 13 3 2 16 16 N 1.65600 * 107.21604 * 287.06893 * 13 3 2 17 17 C 1.46497 * 119.99968 * 281.31754 * 16 13 3 18 18 C 1.53004 * 109.46925 * 159.73691 * 17 16 13 19 19 C 1.53000 * 109.47074 * 39.73662 * 17 16 13 20 20 C 1.50701 * 109.47247 * 279.73318 * 17 16 13 21 21 C 1.38676 * 120.41705 * 161.58797 * 20 17 16 22 22 C 1.38623 * 118.42124 * 180.02562 * 21 20 17 23 23 C 1.38228 * 119.16095 * 359.97438 * 22 21 20 24 24 C 1.50699 * 119.61783 * 179.97438 * 23 22 21 25 25 N 1.31854 * 120.76172 * 0.02562 * 23 22 21 26 26 C 1.31888 * 121.72772 * 359.70210 * 25 23 22 27 27 H 1.09000 * 109.46740 * 184.39377 * 1 2 3 28 28 H 1.08997 * 109.46919 * 304.39771 * 1 2 3 29 29 H 1.08995 * 109.46506 * 64.39842 * 1 2 3 30 30 H 1.08993 * 109.47421 * 239.99399 * 2 1 3 31 31 H 1.09002 * 109.46904 * 119.99542 * 2 1 3 32 32 H 1.09004 * 109.47504 * 40.67255 * 4 3 2 33 33 H 1.08998 * 109.47556 * 160.67407 * 4 3 2 34 34 H 0.97003 * 120.00317 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99360 * 101.32520 * 16 13 3 36 36 H 1.09002 * 109.46912 * 300.00026 * 18 17 16 37 37 H 1.08998 * 109.47059 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47163 * 59.99531 * 18 17 16 39 39 H 1.09003 * 109.47087 * 170.17487 * 19 17 16 40 40 H 1.08998 * 109.46901 * 290.17689 * 19 17 16 41 41 H 1.08999 * 109.47001 * 50.17259 * 19 17 16 42 42 H 1.07999 * 120.78525 * 0.02748 * 21 20 17 43 43 H 1.07995 * 120.41999 * 179.97438 * 22 21 20 44 44 H 1.08995 * 109.47474 * 90.00571 * 24 23 22 45 45 H 1.09003 * 109.46916 * 210.00429 * 24 23 22 46 46 H 1.09001 * 109.47128 * 329.99847 * 24 23 22 47 47 H 1.07997 * 119.61875 * 180.30888 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1664 2.1058 -1.2647 5 6 3.4433 1.6790 -1.9417 6 1 4.0810 0.9420 -1.4762 7 6 3.7979 2.2300 -3.1547 8 7 4.9126 1.8579 -3.7453 9 14 2.6953 3.5052 -3.9594 10 1 3.0958 4.8619 -3.5074 11 1 2.8300 3.4155 -5.4356 12 1 1.2834 3.2521 -3.5749 13 16 2.4030 2.1235 1.4295 14 8 2.9803 3.3764 1.0883 15 8 3.0706 1.1498 2.2203 16 7 0.9794 2.4603 2.2055 17 6 0.1779 3.6163 1.7966 18 6 -1.2631 3.4336 2.2774 19 6 0.1954 3.7351 0.2713 20 6 0.7554 4.8684 2.4047 21 6 0.4327 6.1138 1.8868 22 6 0.9879 7.2381 2.4779 23 6 1.8382 7.0817 3.5564 24 6 2.4480 8.2969 4.2064 25 7 2.1227 5.8815 4.0224 26 6 1.6089 4.7904 3.4885 27 1 -0.3633 -1.0247 0.0787 28 1 -0.3633 0.5806 0.8479 29 1 -0.3632 0.4441 -0.9268 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.3191 1.8820 -1.9130 33 1 2.2001 3.1773 -1.0678 34 1 5.1619 2.2453 -4.5990 35 1 0.6764 1.8921 2.9310 36 1 -1.6808 2.5279 1.8376 37 1 -1.8595 4.2935 1.9728 38 1 -1.2755 3.3489 3.3640 39 1 -0.5345 4.4810 -0.0434 40 1 1.1894 4.0377 -0.0582 41 1 -0.0562 2.7713 -0.1711 42 1 -0.2353 6.2054 1.0432 43 1 0.7590 8.2237 2.1005 44 1 1.7936 8.6494 5.0037 45 1 3.4208 8.0362 4.6234 46 1 2.5707 9.0839 3.4623 47 1 1.8613 3.8246 3.9007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336952617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:34 Heat of formation + Delta-G solvation = -36.485550 kcal Electronic energy + Delta-G solvation = -30081.293536 eV Core-core repulsion = 26198.243010 eV Total energy + Delta-G solvation = -3883.050525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.53322 -37.74627 -36.60553 -36.22378 -35.25003 -32.68983 -32.52808 -32.30508 -30.58210 -30.09569 -27.59624 -27.44140 -27.14703 -23.44344 -22.99632 -22.70208 -21.55251 -20.40037 -18.74491 -17.43874 -17.35052 -16.87722 -16.66655 -16.46124 -15.67421 -15.38268 -14.70158 -14.46747 -14.25516 -14.00965 -13.97003 -13.57015 -13.32165 -13.27293 -12.87039 -12.74058 -12.52071 -12.42268 -12.38664 -12.24330 -12.08456 -12.02550 -12.01791 -11.68758 -11.52460 -11.45293 -11.34747 -11.14415 -10.99173 -10.89669 -10.49301 -10.36183 -10.22706 -9.80289 -9.71958 -9.54177 -9.22143 -8.70058 -8.61317 -8.15240 -6.11324 -4.10951 1.07205 1.15427 1.34541 3.23925 3.28651 3.31224 3.37818 3.77091 4.00612 4.27898 4.35461 4.61700 4.68908 4.75975 4.80642 4.89699 4.98030 5.12222 5.16590 5.23275 5.32007 5.40753 5.47841 5.48035 5.50279 5.58357 5.60871 5.64418 5.68782 5.80599 5.82426 5.91381 5.92534 6.02292 6.14722 6.17615 6.25753 6.37127 6.46302 6.56879 6.74257 6.75973 7.01908 7.12240 7.40806 7.57863 8.05955 8.46374 8.94108 9.47942 11.02076 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011520 B = 0.004936 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.907360 B = 5671.768267 C = 6582.185520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.118 3.882 3 N -0.985 5.985 4 C 0.220 3.780 5 C -0.537 4.537 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.894 5.894 9 Si 0.869 3.131 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.263 1.263 13 S 2.779 3.221 14 O -0.961 6.961 15 O -0.991 6.991 16 N -1.128 6.128 17 C 0.234 3.766 18 C -0.143 4.143 19 C -0.206 4.206 20 C -0.137 4.137 21 C -0.061 4.061 22 C -0.171 4.171 23 C 0.119 3.881 24 C -0.102 4.102 25 N -0.482 5.482 26 C 0.121 3.879 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.265 0.735 35 H 0.411 0.589 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.188 6.568 12.362 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.009 4.009 3 N -0.826 5.826 4 C 0.096 3.904 5 C -0.576 4.576 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.695 3.305 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.188 1.188 13 S 2.787 3.213 14 O -0.945 6.945 15 O -0.975 6.975 16 N -0.885 5.885 17 C 0.145 3.855 18 C -0.202 4.202 19 C -0.264 4.264 20 C -0.141 4.141 21 C -0.088 4.088 22 C -0.190 4.190 23 C -0.019 4.019 24 C -0.159 4.159 25 N -0.191 5.191 26 C -0.037 4.037 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.244 0.756 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.544 6.843 13.072 20.718 hybrid contribution -1.435 0.294 -1.253 1.928 sum -15.980 7.137 11.819 21.118 Atomic orbital electron populations 1.22318 0.97191 1.01540 1.02190 1.21137 0.92844 0.82997 1.03884 1.57466 1.81356 1.21567 1.22236 1.19638 0.97834 0.92224 0.80662 1.21422 1.05644 1.25499 1.05020 0.90389 1.24865 0.94942 0.96221 0.96816 1.69896 1.22898 1.43320 1.17126 0.86963 0.81643 0.82866 0.78981 1.19718 1.20976 1.18804 1.02099 0.72877 0.73496 0.72789 1.93611 1.74963 1.42478 1.83425 1.93566 1.71237 1.62420 1.70242 1.56515 1.44094 1.37837 1.50019 1.18651 0.90902 0.81730 0.94265 1.22066 0.93423 1.02982 1.01728 1.23043 1.05864 1.04672 0.92822 1.21099 0.99705 0.95581 0.97706 1.21358 0.97800 0.91494 0.98125 1.21875 0.99694 0.99593 0.97887 1.21276 0.94044 0.93348 0.93212 1.20687 1.01436 0.93311 1.00509 1.67502 1.22554 0.98379 1.30714 1.22393 0.92177 0.96705 0.92404 0.92108 0.92865 0.92092 0.89195 0.91018 0.95179 0.93698 0.92498 0.75619 0.91084 0.91158 0.91890 0.90293 0.88875 0.89664 0.84713 0.84913 0.90696 0.90502 0.90821 0.83641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 9.70 37.16 0.36 -1.74 16 2 C 0.12 1.91 6.36 -4.04 -0.03 1.88 16 3 N -0.99 -19.06 2.02 -115.66 -0.23 -19.29 16 4 C 0.22 4.96 2.68 -5.19 -0.01 4.95 16 5 C -0.54 -15.02 9.83 -34.44 -0.34 -15.35 16 6 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.89 -27.28 13.96 55.43 0.77 -26.51 16 9 Si 0.87 20.75 27.47 -169.99 -4.67 16.08 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 13 S 2.78 53.11 5.44 -107.50 -0.59 52.52 16 14 O -0.96 -21.66 13.56 -57.17 -0.78 -22.44 16 15 O -0.99 -21.22 17.17 -57.17 -0.98 -22.20 16 16 N -1.13 -14.86 3.86 -0.40 0.00 -14.86 16 17 C 0.23 2.83 0.91 -132.97 -0.12 2.71 16 18 C -0.14 -1.20 8.59 37.16 0.32 -0.88 16 19 C -0.21 -2.76 5.99 37.16 0.22 -2.54 16 20 C -0.14 -1.88 3.95 -104.48 -0.41 -2.30 16 21 C -0.06 -0.76 9.27 -39.28 -0.36 -1.12 16 22 C -0.17 -2.04 9.74 -39.44 -0.38 -2.42 16 23 C 0.12 1.59 6.78 -82.59 -0.56 1.04 16 24 C -0.10 -1.00 10.17 36.00 0.37 -0.64 16 25 N -0.48 -7.64 10.27 -9.48 -0.10 -7.74 16 26 C 0.12 1.86 9.99 -17.55 -0.18 1.68 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.56 7.84 -51.93 -0.41 0.15 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.57 8.06 -51.93 -0.42 1.15 16 31 H 0.07 1.11 7.27 -51.93 -0.38 0.73 16 32 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 33 H 0.05 1.04 4.21 -51.93 -0.22 0.82 16 34 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 35 H 0.41 4.18 8.70 -34.46 -0.30 3.88 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.82 7.15 -51.93 -0.37 0.45 16 40 H 0.09 1.59 4.11 -51.93 -0.21 1.38 16 41 H 0.08 1.11 6.25 -51.93 -0.32 0.79 16 42 H 0.14 1.30 6.93 -52.49 -0.36 0.94 16 43 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 47 H 0.15 2.12 7.12 -52.49 -0.37 1.75 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -36.21 378.30 -9.23 -45.44 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.13 Total: 5.98 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.23 Total: -12.70 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: 0.44 Total: -68.39 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.76 Total: -44.64 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.67 Total: 16.08 kcal Atomic # 16 Polarization: 53.11 SS G_CDS: -0.59 Total: 52.52 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.21 -9.23 -45.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336952617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.957 kcal (2) G-P(sol) polarization free energy of solvation -36.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds