Wall clock time and date at job start Wed Apr 1 2020 01:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46937 * 2 1 4 4 C 1.46500 * 119.99800 * 274.60920 * 3 2 1 5 5 C 1.50699 * 109.47113 * 280.67670 * 4 3 2 6 6 H 1.08002 * 120.00143 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00111 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00161 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00033 * 359.97438 * 7 5 4 10 10 H 1.48512 * 109.46950 * 90.00163 * 9 7 5 11 11 H 1.48498 * 109.47626 * 210.00175 * 9 7 5 12 12 H 1.48506 * 109.47189 * 330.00582 * 9 7 5 13 13 S 1.65602 * 120.00197 * 94.61055 * 3 2 1 14 14 O 1.42105 * 106.39928 * 173.52758 * 13 3 2 15 15 O 1.42098 * 106.40009 * 40.61100 * 13 3 2 16 16 N 1.65600 * 107.21604 * 287.06893 * 13 3 2 17 17 C 1.46497 * 119.99968 * 281.31754 * 16 13 3 18 18 C 1.53004 * 109.46925 * 159.73691 * 17 16 13 19 19 C 1.53000 * 109.47074 * 39.73662 * 17 16 13 20 20 C 1.50701 * 109.47247 * 279.73318 * 17 16 13 21 21 C 1.38676 * 120.41705 * 161.58797 * 20 17 16 22 22 C 1.38623 * 118.42124 * 180.02562 * 21 20 17 23 23 C 1.38228 * 119.16095 * 359.97438 * 22 21 20 24 24 C 1.50699 * 119.61783 * 179.97438 * 23 22 21 25 25 N 1.31854 * 120.76172 * 0.02562 * 23 22 21 26 26 C 1.31888 * 121.72772 * 359.70210 * 25 23 22 27 27 H 1.09000 * 109.46740 * 184.39377 * 1 2 3 28 28 H 1.08997 * 109.46919 * 304.39771 * 1 2 3 29 29 H 1.08995 * 109.46506 * 64.39842 * 1 2 3 30 30 H 1.08993 * 109.47421 * 239.99399 * 2 1 3 31 31 H 1.09002 * 109.46904 * 119.99542 * 2 1 3 32 32 H 1.09004 * 109.47504 * 40.67255 * 4 3 2 33 33 H 1.08998 * 109.47556 * 160.67407 * 4 3 2 34 34 H 0.97003 * 120.00317 * 179.97438 * 8 7 5 35 35 H 0.97001 * 119.99360 * 101.32520 * 16 13 3 36 36 H 1.09002 * 109.46912 * 300.00026 * 18 17 16 37 37 H 1.08998 * 109.47059 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47163 * 59.99531 * 18 17 16 39 39 H 1.09003 * 109.47087 * 170.17487 * 19 17 16 40 40 H 1.08998 * 109.46901 * 290.17689 * 19 17 16 41 41 H 1.08999 * 109.47001 * 50.17259 * 19 17 16 42 42 H 1.07999 * 120.78525 * 0.02748 * 21 20 17 43 43 H 1.07995 * 120.41999 * 179.97438 * 22 21 20 44 44 H 1.08995 * 109.47474 * 90.00571 * 24 23 22 45 45 H 1.09003 * 109.46916 * 210.00429 * 24 23 22 46 46 H 1.09001 * 109.47128 * 329.99847 * 24 23 22 47 47 H 1.07997 * 119.61875 * 180.30888 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1664 2.1058 -1.2647 5 6 3.4433 1.6790 -1.9417 6 1 4.0810 0.9420 -1.4762 7 6 3.7979 2.2300 -3.1547 8 7 4.9126 1.8579 -3.7453 9 14 2.6953 3.5052 -3.9594 10 1 3.0958 4.8619 -3.5074 11 1 2.8300 3.4155 -5.4356 12 1 1.2834 3.2521 -3.5749 13 16 2.4030 2.1235 1.4295 14 8 2.9803 3.3764 1.0883 15 8 3.0706 1.1498 2.2203 16 7 0.9794 2.4603 2.2055 17 6 0.1779 3.6163 1.7966 18 6 -1.2631 3.4336 2.2774 19 6 0.1954 3.7351 0.2713 20 6 0.7554 4.8684 2.4047 21 6 0.4327 6.1138 1.8868 22 6 0.9879 7.2381 2.4779 23 6 1.8382 7.0817 3.5564 24 6 2.4480 8.2969 4.2064 25 7 2.1227 5.8815 4.0224 26 6 1.6089 4.7904 3.4885 27 1 -0.3633 -1.0247 0.0787 28 1 -0.3633 0.5806 0.8479 29 1 -0.3632 0.4441 -0.9268 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.3191 1.8820 -1.9130 33 1 2.2001 3.1773 -1.0678 34 1 5.1619 2.2453 -4.5990 35 1 0.6764 1.8921 2.9310 36 1 -1.6808 2.5279 1.8376 37 1 -1.8595 4.2935 1.9728 38 1 -1.2755 3.3489 3.3640 39 1 -0.5345 4.4810 -0.0434 40 1 1.1894 4.0377 -0.0582 41 1 -0.0562 2.7713 -0.1711 42 1 -0.2353 6.2054 1.0432 43 1 0.7590 8.2237 2.1005 44 1 1.7936 8.6494 5.0037 45 1 3.4208 8.0362 4.6234 46 1 2.5707 9.0839 3.4623 47 1 1.8613 3.8246 3.9007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336952617.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:33 Heat of formation + Delta-G solvation = -63.921513 kcal Electronic energy + Delta-G solvation = -30082.483248 eV Core-core repulsion = 26198.243010 eV Total energy + Delta-G solvation = -3884.240238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.49900 -38.88036 -38.12626 -37.70262 -36.89091 -34.69033 -33.59295 -33.23263 -31.93128 -31.20325 -28.93936 -28.48886 -28.22050 -24.68544 -24.27975 -23.70743 -23.10188 -21.42571 -20.11142 -19.14394 -18.83878 -18.41209 -17.90700 -17.62275 -17.10630 -16.44133 -16.14560 -15.81332 -15.54055 -15.28425 -14.91888 -14.74170 -14.63685 -14.33401 -14.22562 -14.01022 -13.86385 -13.63622 -13.51696 -13.27476 -13.20789 -13.14927 -13.01311 -12.97026 -12.91395 -12.73461 -12.68039 -12.51523 -12.31154 -12.24798 -12.02882 -11.86940 -11.71217 -11.55574 -10.92719 -10.76497 -10.67810 -10.24492 -9.77107 -9.65613 -8.30186 -6.36147 -0.40492 0.17325 0.38671 1.34933 1.40160 1.47958 2.01859 2.34818 2.56454 2.81409 3.04625 3.35832 3.39733 3.67618 3.81119 3.83158 3.93060 3.98132 4.07869 4.18684 4.34862 4.46025 4.47817 4.59778 4.68124 4.70276 4.76005 4.77311 4.79342 4.84543 4.91494 4.99238 5.03994 5.06782 5.09967 5.18931 5.23081 5.28536 5.32667 5.43175 5.47451 5.48588 5.54364 5.80129 5.82924 6.15269 6.31119 6.68023 7.06618 7.27386 8.87354 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011520 B = 0.004936 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.907360 B = 5671.768267 C = 6582.185520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.991 5.991 4 C 0.232 3.768 5 C -0.549 4.549 6 H 0.025 0.975 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.938 3.062 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.219 1.219 13 S 2.791 3.209 14 O -1.000 7.000 15 O -1.026 7.026 16 N -1.105 6.105 17 C 0.233 3.767 18 C -0.137 4.137 19 C -0.213 4.213 20 C -0.145 4.145 21 C -0.068 4.068 22 C -0.169 4.169 23 C 0.096 3.904 24 C -0.100 4.100 25 N -0.517 5.517 26 C 0.089 3.911 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.267 0.733 35 H 0.427 0.573 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.167 0.833 43 H 0.167 0.833 44 H 0.093 0.907 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.850 8.461 12.143 25.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.831 5.831 4 C 0.108 3.892 5 C -0.588 4.588 6 H 0.043 0.957 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.760 3.240 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.141 1.141 13 S 2.799 3.201 14 O -0.983 6.983 15 O -1.009 7.009 16 N -0.867 5.867 17 C 0.144 3.856 18 C -0.195 4.195 19 C -0.271 4.271 20 C -0.149 4.149 21 C -0.094 4.094 22 C -0.189 4.189 23 C -0.041 4.041 24 C -0.157 4.157 25 N -0.228 5.228 26 C -0.068 4.068 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.263 0.737 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.184 0.816 43 H 0.185 0.815 44 H 0.111 0.889 45 H 0.082 0.918 46 H 0.113 0.887 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.226 8.688 12.892 24.725 hybrid contribution 0.115 -0.326 -1.086 1.140 sum -19.111 8.362 11.806 23.969 Atomic orbital electron populations 1.22239 0.93117 1.03627 1.03188 1.21373 0.96189 0.81258 1.02953 1.57382 1.81873 1.22736 1.21125 1.19373 0.95526 0.92530 0.81782 1.21803 1.07346 1.24248 1.05430 0.95698 1.25946 0.96668 0.98842 0.97560 1.70082 1.25538 1.45454 1.17910 0.85858 0.81598 0.78900 0.77663 1.19694 1.20554 1.14120 1.01431 0.73670 0.72334 0.72619 1.93555 1.76684 1.44044 1.84063 1.93509 1.73122 1.63368 1.70929 1.55941 1.42556 1.38574 1.49653 1.18940 0.92583 0.80202 0.93852 1.22070 0.90402 1.04763 1.02267 1.23098 1.04634 1.06006 0.93322 1.21306 0.99388 0.97038 0.97174 1.21800 0.97990 0.90903 0.98670 1.22302 0.98455 1.01239 0.96863 1.21906 0.94665 0.93437 0.94113 1.20769 1.00874 0.92562 1.01481 1.67454 1.23719 0.99481 1.32101 1.22460 0.93767 0.96593 0.93969 0.89684 0.90780 0.91920 0.91416 0.90880 0.92725 0.93363 0.92404 0.73655 0.89337 0.89129 0.91268 0.86763 0.92627 0.89186 0.81602 0.81530 0.88887 0.91804 0.88658 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 9.70 71.98 0.70 -2.73 16 2 C 0.11 3.45 6.36 86.38 0.55 4.00 16 3 N -0.99 -38.26 2.02 -519.84 -1.05 -39.31 16 4 C 0.23 10.37 2.68 85.63 0.23 10.60 16 5 C -0.55 -31.86 9.83 25.60 0.25 -31.60 16 6 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 7 C 0.01 0.44 5.47 84.65 0.46 0.90 16 8 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 9 Si 0.94 42.12 27.47 68.60 1.88 44.00 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.22 -8.21 6.54 99.48 0.65 -7.56 16 13 S 2.79 108.05 5.44 -56.49 -0.31 107.74 16 14 O -1.00 -46.30 13.56 -128.00 -1.74 -48.03 16 15 O -1.03 -45.50 17.17 -128.00 -2.20 -47.70 16 16 N -1.10 -27.47 3.86 -155.18 -0.60 -28.07 16 17 C 0.23 4.96 0.91 2.86 0.00 4.96 16 18 C -0.14 -1.65 8.59 71.98 0.62 -1.03 16 19 C -0.21 -4.91 5.99 71.98 0.43 -4.48 16 20 C -0.15 -3.72 3.95 -19.77 -0.08 -3.80 16 21 C -0.07 -1.46 9.27 22.47 0.21 -1.25 16 22 C -0.17 -3.58 9.74 22.36 0.22 -3.36 16 23 C 0.10 2.48 6.78 42.55 0.29 2.77 16 24 C -0.10 -1.82 10.17 71.24 0.72 -1.09 16 25 N -0.52 -16.60 10.27 -183.89 -1.89 -18.49 16 26 C 0.09 2.74 9.99 84.67 0.85 3.59 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.24 7.84 -2.39 -0.02 1.23 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 2.43 8.06 -2.39 -0.02 2.41 16 31 H 0.07 2.28 7.27 -2.39 -0.02 2.26 16 32 H 0.05 2.18 7.20 -2.38 -0.02 2.16 16 33 H 0.05 2.18 4.21 -2.39 -0.01 2.17 16 34 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 35 H 0.43 7.92 8.70 -96.75 -0.84 7.08 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.11 1.76 7.15 -2.39 -0.02 1.74 16 40 H 0.05 1.76 4.11 -2.39 -0.01 1.75 16 41 H 0.09 1.97 6.25 -2.39 -0.01 1.96 16 42 H 0.17 2.39 6.93 -2.91 -0.02 2.37 16 43 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 44 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 47 H 0.14 4.16 7.12 -2.91 -0.02 4.14 16 Total: -1.00 -85.97 378.30 -0.06 -86.03 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.09 Total: 26.41 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 5.45 Total: -22.52 kcal Atomic # 7 Polarization: -142.69 SS G_CDS: -3.24 Total: -145.93 kcal Atomic # 8 Polarization: -91.80 SS G_CDS: -3.93 Total: -95.73 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.88 Total: 44.00 kcal Atomic # 16 Polarization: 108.05 SS G_CDS: -0.31 Total: 107.74 kcal Total: -85.97 -0.06 -86.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336952617.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.108 kcal (2) G-P(sol) polarization free energy of solvation -85.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds