Wall clock time and date at job start Wed Apr 1 2020 01:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46871 * 2 1 4 4 C 1.46495 * 120.00001 * 274.99608 * 3 2 1 5 5 C 1.50707 * 109.47363 * 280.12379 * 4 3 2 6 6 H 1.07998 * 119.99364 * 4.10664 * 5 4 3 7 7 C 1.37879 * 120.00208 * 184.11249 * 5 4 3 8 8 N 1.31518 * 119.99782 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00065 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47085 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47172 * 119.99334 * 9 7 5 12 12 H 1.48505 * 109.47211 * 239.99780 * 9 7 5 13 13 S 1.65594 * 120.00028 * 95.00028 * 3 2 1 14 14 O 1.42100 * 106.40429 * 330.09373 * 13 3 2 15 15 O 1.42104 * 106.40439 * 197.17474 * 13 3 2 16 16 N 1.65601 * 107.22281 * 83.63301 * 13 3 2 17 17 C 1.46498 * 119.99970 * 65.43897 * 16 13 3 18 18 C 1.52997 * 109.47383 * 165.63737 * 17 16 13 19 19 C 1.52992 * 109.47459 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47338 * 179.97438 * 19 18 17 21 21 C 1.38222 * 119.61994 * 125.25551 * 20 19 18 22 22 C 1.38627 * 119.16329 * 180.27568 * 21 20 19 23 23 C 1.38677 * 118.41853 * 359.47633 * 22 21 20 24 24 C 1.38180 * 119.16162 * 0.25454 * 23 22 21 25 25 C 1.50694 * 119.61924 * 180.02562 * 24 23 22 26 26 N 1.31853 * 119.61660 * 304.99667 * 20 19 18 27 27 H 1.08999 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47496 * 300.00481 * 1 2 3 29 29 H 1.09003 * 109.46665 * 60.00392 * 1 2 3 30 30 H 1.09003 * 109.47190 * 240.00191 * 2 1 3 31 31 H 1.08995 * 109.46441 * 119.99886 * 2 1 3 32 32 H 1.09005 * 109.47636 * 40.12168 * 4 3 2 33 33 H 1.08999 * 109.47315 * 160.12516 * 4 3 2 34 34 H 0.97001 * 119.99612 * 180.02562 * 8 7 5 35 35 H 0.97002 * 120.00348 * 245.44604 * 16 13 3 36 36 H 1.09000 * 109.47027 * 45.63357 * 17 16 13 37 37 H 1.09001 * 109.47354 * 285.63452 * 17 16 13 38 38 H 1.09000 * 109.47348 * 59.99818 * 18 17 16 39 39 H 1.09001 * 109.46643 * 300.00151 * 18 17 16 40 40 H 1.08997 * 109.47679 * 59.99376 * 19 18 17 41 41 H 1.09001 * 109.47102 * 299.99608 * 19 18 17 42 42 H 1.08010 * 120.41893 * 0.02562 * 21 20 19 43 43 H 1.08002 * 120.79590 * 179.75673 * 22 21 20 44 44 H 1.07997 * 120.41952 * 180.23561 * 23 22 21 45 45 H 1.09005 * 109.47368 * 89.99785 * 25 24 23 46 46 H 1.09005 * 109.47294 * 210.00067 * 25 24 23 47 47 H 1.08999 * 109.47337 * 329.99831 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4377 1.6934 -1.9435 6 1 4.0487 0.9134 -1.5139 7 6 3.8281 2.3094 -3.1137 8 7 3.0837 3.2589 -3.6370 9 14 5.4142 1.7952 -3.9557 10 1 6.0635 0.7146 -3.1708 11 1 5.1112 1.3008 -5.3228 12 1 6.3292 2.9616 -4.0425 13 16 2.4121 2.1202 1.4286 14 8 1.5767 1.5430 2.4227 15 8 2.4519 3.5153 1.1612 16 7 3.9618 1.6713 1.8020 17 6 5.0730 2.0926 0.9453 18 6 6.3966 1.8666 1.6787 19 6 7.5570 2.3072 0.7843 20 6 8.8607 2.0852 1.5070 21 6 9.8516 1.3276 0.9114 22 6 11.0449 1.1247 1.5872 23 6 11.2018 1.7031 2.8377 24 6 10.1688 2.4527 3.3673 25 6 10.3285 3.0863 4.7252 26 7 9.0448 2.6201 2.6980 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.3119 1.8788 -1.9112 33 1 2.1835 3.1802 -1.0655 34 1 3.3582 3.6920 -4.4604 35 1 4.1338 1.1293 2.5879 36 1 4.9663 3.1506 0.7059 37 1 5.0636 1.5090 0.0247 38 1 6.5033 0.8086 1.9182 39 1 6.4060 2.4502 2.5993 40 1 7.4501 3.3652 0.5452 41 1 7.5477 1.7239 -0.1364 42 1 9.6966 0.8959 -0.0664 43 1 11.8353 0.5340 1.1482 44 1 12.1196 1.5691 3.3909 45 1 10.7544 4.0834 4.6131 46 1 9.3543 3.1596 5.2088 47 1 10.9922 2.4743 5.3360 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351993134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:29 Heat of formation + Delta-G solvation = -63.574841 kcal Electronic energy + Delta-G solvation = -28070.356856 eV Core-core repulsion = 24186.131651 eV Total energy + Delta-G solvation = -3884.225205 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44384 -36.64425 -36.19063 -35.91851 -35.12639 -33.83749 -32.90373 -32.70384 -30.84285 -29.89417 -27.94400 -26.62072 -25.68720 -23.14245 -22.74119 -22.01187 -21.67233 -21.06326 -18.67954 -17.05318 -16.78443 -16.59666 -16.47600 -16.38471 -15.76211 -15.27265 -15.12659 -14.77328 -14.51926 -14.31207 -13.76842 -13.34791 -13.29657 -13.21727 -12.99649 -12.86934 -12.45491 -12.41493 -12.15539 -12.04679 -11.94699 -11.85049 -11.66470 -11.44385 -11.26858 -11.22798 -11.07195 -10.93242 -10.88986 -10.75916 -10.50213 -10.34619 -10.00154 -9.93765 -9.76939 -9.48352 -8.91751 -8.88080 -8.50638 -8.02319 -6.11543 -4.17847 0.95962 1.14410 1.37863 3.21465 3.29245 3.31212 3.56955 3.65732 4.05764 4.23920 4.34024 4.52773 4.56387 4.89589 4.96592 5.09837 5.19890 5.22506 5.25399 5.31803 5.36426 5.38527 5.43794 5.45757 5.57884 5.78614 5.79865 5.83822 5.86378 5.93873 6.01696 6.05567 6.10596 6.19567 6.21424 6.35760 6.47478 6.57244 6.65982 6.71187 6.76452 7.33958 7.42050 7.49918 7.72661 7.86352 7.92876 8.16657 8.86668 9.47391 10.96533 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010257 B = 0.003573 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.309732 B = 7834.489254 C = 9755.143248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.242 3.758 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.888 3.112 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.786 3.214 14 O -1.003 7.003 15 O -0.979 6.979 16 N -1.131 6.131 17 C 0.116 3.884 18 C -0.113 4.113 19 C -0.073 4.073 20 C 0.146 3.854 21 C -0.178 4.178 22 C -0.071 4.071 23 C -0.185 4.185 24 C 0.129 3.871 25 C -0.104 4.104 26 N -0.480 5.480 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.136 0.864 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.042 -5.913 10.993 18.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.834 5.834 4 C 0.120 3.880 5 C -0.577 4.577 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.716 3.284 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.794 3.206 14 O -0.987 6.987 15 O -0.962 6.962 16 N -0.889 5.889 17 C -0.010 4.010 18 C -0.152 4.152 19 C -0.112 4.112 20 C 0.008 3.992 21 C -0.198 4.198 22 C -0.097 4.097 23 C -0.205 4.205 24 C -0.009 4.009 25 C -0.161 4.161 26 N -0.190 5.190 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.237 0.763 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.762 -4.565 11.531 17.092 hybrid contribution 2.041 -1.330 -1.029 2.644 sum 13.803 -5.895 10.502 18.318 Atomic orbital electron populations 1.22214 0.97006 1.01271 1.02489 1.20933 0.93617 0.82949 1.01908 1.57722 1.78654 1.22893 1.24107 1.19219 0.97194 0.92622 0.78949 1.21568 1.07262 1.20614 1.08219 0.91728 1.24950 0.97026 0.94779 0.97066 1.69946 1.37859 1.24330 1.20380 0.86603 0.83618 0.78532 0.79654 1.19570 1.21022 1.20781 1.01715 0.72607 0.73727 0.72599 1.93543 1.65624 1.79824 1.59680 1.93576 1.86553 1.30939 1.85169 1.55960 1.25249 1.69913 1.37790 1.21426 0.84511 1.01648 0.93395 1.21644 0.92720 1.01579 0.99248 1.20568 0.89229 1.03740 0.97673 1.21338 0.95735 0.91725 0.90396 1.22046 0.94559 1.01398 1.01822 1.21564 0.97117 0.96828 0.94171 1.21898 1.00442 1.00939 0.97233 1.21297 0.89124 0.94147 0.96369 1.20711 1.03450 1.00521 0.91431 1.67340 1.22981 1.20866 1.07860 0.92512 0.92469 0.92121 0.90223 0.92263 0.94849 0.92592 0.92654 0.76311 0.90257 0.89645 0.91957 0.90536 0.89127 0.89567 0.84658 0.84979 0.85143 0.90468 0.90358 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.13 2.28 6.02 -4.04 -0.02 2.26 16 3 N -0.99 -20.14 2.84 -115.66 -0.33 -20.47 16 4 C 0.24 5.87 5.46 -5.19 -0.03 5.84 16 5 C -0.54 -13.37 8.51 -34.44 -0.29 -13.66 16 6 H 0.06 1.53 6.47 -52.49 -0.34 1.19 16 7 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -24.77 13.29 55.43 0.74 -24.04 16 9 Si 0.89 19.68 29.54 -169.99 -5.02 14.66 16 10 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 S 2.79 55.42 6.07 -107.50 -0.65 54.77 16 14 O -1.00 -20.63 17.17 -57.17 -0.98 -21.61 16 15 O -0.98 -23.07 16.01 -57.17 -0.92 -23.98 16 16 N -1.13 -18.41 6.06 -10.61 -0.06 -18.47 16 17 C 0.12 1.91 6.21 -4.04 -0.03 1.89 16 18 C -0.11 -1.53 5.21 -26.74 -0.14 -1.67 16 19 C -0.07 -0.96 5.61 -27.88 -0.16 -1.12 16 20 C 0.15 1.87 6.18 -82.59 -0.51 1.36 16 21 C -0.18 -1.96 9.71 -39.44 -0.38 -2.34 16 22 C -0.07 -0.67 10.18 -39.28 -0.40 -1.07 16 23 C -0.19 -1.73 9.74 -39.44 -0.38 -2.11 16 24 C 0.13 1.42 6.78 -82.59 -0.56 0.86 16 25 C -0.10 -0.83 10.17 36.00 0.37 -0.47 16 26 N -0.48 -6.41 9.79 -5.74 -0.06 -6.46 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.95 7.97 -51.93 -0.41 0.54 16 29 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 31 H 0.06 0.90 7.78 -51.93 -0.40 0.50 16 32 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.06 1.52 6.77 -51.93 -0.35 1.16 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.41 5.47 8.65 -34.48 -0.30 5.17 16 36 H 0.08 1.45 7.75 -51.93 -0.40 1.04 16 37 H 0.09 1.51 5.86 -51.93 -0.30 1.20 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.06 7.94 -51.93 -0.41 0.65 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.09 1.06 7.87 -51.93 -0.41 0.66 16 42 H 0.14 1.27 7.95 -52.48 -0.42 0.86 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 44 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 0.42 8.08 -51.93 -0.42 0.01 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -32.33 400.09 -11.04 -43.37 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.53 Total: 7.18 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.25 Total: -10.97 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: 0.29 Total: -69.44 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -1.90 Total: -45.59 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 55.42 SS G_CDS: -0.65 Total: 54.77 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.33 -11.04 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351993134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.209 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds