Wall clock time and date at job start Wed Apr 1 2020 01:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46871 * 2 1 4 4 C 1.46495 * 120.00001 * 274.99608 * 3 2 1 5 5 C 1.50707 * 109.47363 * 280.12379 * 4 3 2 6 6 H 1.07998 * 119.99364 * 4.10664 * 5 4 3 7 7 C 1.37879 * 120.00208 * 184.11249 * 5 4 3 8 8 N 1.31518 * 119.99782 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00065 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47085 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47172 * 119.99334 * 9 7 5 12 12 H 1.48505 * 109.47211 * 239.99780 * 9 7 5 13 13 S 1.65594 * 120.00028 * 95.00028 * 3 2 1 14 14 O 1.42100 * 106.40429 * 330.09373 * 13 3 2 15 15 O 1.42104 * 106.40439 * 197.17474 * 13 3 2 16 16 N 1.65601 * 107.22281 * 83.63301 * 13 3 2 17 17 C 1.46498 * 119.99970 * 65.43897 * 16 13 3 18 18 C 1.52997 * 109.47383 * 165.63737 * 17 16 13 19 19 C 1.52992 * 109.47459 * 180.02562 * 18 17 16 20 20 C 1.50704 * 109.47338 * 179.97438 * 19 18 17 21 21 C 1.38222 * 119.61994 * 125.25551 * 20 19 18 22 22 C 1.38627 * 119.16329 * 180.27568 * 21 20 19 23 23 C 1.38677 * 118.41853 * 359.47633 * 22 21 20 24 24 C 1.38180 * 119.16162 * 0.25454 * 23 22 21 25 25 C 1.50694 * 119.61924 * 180.02562 * 24 23 22 26 26 N 1.31853 * 119.61660 * 304.99667 * 20 19 18 27 27 H 1.08999 * 109.46935 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47496 * 300.00481 * 1 2 3 29 29 H 1.09003 * 109.46665 * 60.00392 * 1 2 3 30 30 H 1.09003 * 109.47190 * 240.00191 * 2 1 3 31 31 H 1.08995 * 109.46441 * 119.99886 * 2 1 3 32 32 H 1.09005 * 109.47636 * 40.12168 * 4 3 2 33 33 H 1.08999 * 109.47315 * 160.12516 * 4 3 2 34 34 H 0.97001 * 119.99612 * 180.02562 * 8 7 5 35 35 H 0.97002 * 120.00348 * 245.44604 * 16 13 3 36 36 H 1.09000 * 109.47027 * 45.63357 * 17 16 13 37 37 H 1.09001 * 109.47354 * 285.63452 * 17 16 13 38 38 H 1.09000 * 109.47348 * 59.99818 * 18 17 16 39 39 H 1.09001 * 109.46643 * 300.00151 * 18 17 16 40 40 H 1.08997 * 109.47679 * 59.99376 * 19 18 17 41 41 H 1.09001 * 109.47102 * 299.99608 * 19 18 17 42 42 H 1.08010 * 120.41893 * 0.02562 * 21 20 19 43 43 H 1.08002 * 120.79590 * 179.75673 * 22 21 20 44 44 H 1.07997 * 120.41952 * 180.23561 * 23 22 21 45 45 H 1.09005 * 109.47368 * 89.99785 * 25 24 23 46 46 H 1.09005 * 109.47294 * 210.00067 * 25 24 23 47 47 H 1.08999 * 109.47337 * 329.99831 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4377 1.6934 -1.9435 6 1 4.0487 0.9134 -1.5139 7 6 3.8281 2.3094 -3.1137 8 7 3.0837 3.2589 -3.6370 9 14 5.4142 1.7952 -3.9557 10 1 6.0635 0.7146 -3.1708 11 1 5.1112 1.3008 -5.3228 12 1 6.3292 2.9616 -4.0425 13 16 2.4121 2.1202 1.4286 14 8 1.5767 1.5430 2.4227 15 8 2.4519 3.5153 1.1612 16 7 3.9618 1.6713 1.8020 17 6 5.0730 2.0926 0.9453 18 6 6.3966 1.8666 1.6787 19 6 7.5570 2.3072 0.7843 20 6 8.8607 2.0852 1.5070 21 6 9.8516 1.3276 0.9114 22 6 11.0449 1.1247 1.5872 23 6 11.2018 1.7031 2.8377 24 6 10.1688 2.4527 3.3673 25 6 10.3285 3.0863 4.7252 26 7 9.0448 2.6201 2.6980 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8932 -0.5138 0.8900 32 1 1.3119 1.8788 -1.9112 33 1 2.1835 3.1802 -1.0655 34 1 3.3582 3.6920 -4.4604 35 1 4.1338 1.1293 2.5879 36 1 4.9663 3.1506 0.7059 37 1 5.0636 1.5090 0.0247 38 1 6.5033 0.8086 1.9182 39 1 6.4060 2.4502 2.5993 40 1 7.4501 3.3652 0.5452 41 1 7.5477 1.7239 -0.1364 42 1 9.6966 0.8959 -0.0664 43 1 11.8353 0.5340 1.1482 44 1 12.1196 1.5691 3.3909 45 1 10.7544 4.0834 4.6131 46 1 9.3543 3.1596 5.2088 47 1 10.9922 2.4743 5.3360 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351993134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:28 Heat of formation + Delta-G solvation = -85.431281 kcal Electronic energy + Delta-G solvation = -28071.304622 eV Core-core repulsion = 24186.131651 eV Total energy + Delta-G solvation = -3885.172971 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.23299 -38.32033 -37.69451 -37.33052 -36.86267 -34.84493 -34.62473 -33.67063 -31.84206 -31.48216 -28.75940 -28.45228 -26.72274 -24.91630 -23.69967 -23.24400 -22.84446 -22.12999 -20.25901 -18.65435 -18.55145 -18.20086 -17.46195 -17.31210 -17.13404 -16.70855 -16.25443 -16.09360 -15.71047 -15.42457 -15.24829 -14.79137 -14.60396 -14.20129 -14.05861 -13.96594 -13.75461 -13.67512 -13.54090 -13.31432 -13.22299 -13.08186 -13.04377 -12.99210 -12.71664 -12.69974 -12.61767 -12.49639 -12.27143 -12.13991 -11.95912 -11.85462 -11.63898 -11.53341 -10.72731 -10.53718 -10.33748 -10.30311 -9.75357 -9.68353 -8.10717 -6.23967 -0.25846 0.18254 0.39546 1.47105 1.48619 1.59769 2.04549 2.47728 2.64427 2.82576 3.21970 3.26908 3.48037 3.72296 3.90438 3.99066 4.06235 4.16159 4.22091 4.24774 4.36182 4.46022 4.49912 4.59763 4.64746 4.72110 4.74549 4.78229 4.79604 4.80780 4.91859 5.00836 5.02283 5.17787 5.19336 5.23452 5.29060 5.32269 5.35791 5.42040 5.45113 5.57505 5.83278 5.86105 5.94834 6.17257 6.26330 6.88346 7.12666 7.45836 8.98026 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010257 B = 0.003573 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.309732 B = 7834.489254 C = 9755.143248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.995 5.995 4 C 0.257 3.743 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.010 3.990 8 N -0.931 5.931 9 Si 0.953 3.047 10 H -0.247 1.247 11 H -0.287 1.287 12 H -0.283 1.283 13 S 2.799 3.201 14 O -1.007 7.007 15 O -1.020 7.020 16 N -1.114 6.114 17 C 0.119 3.881 18 C -0.098 4.098 19 C -0.073 4.073 20 C 0.122 3.878 21 C -0.187 4.187 22 C -0.071 4.071 23 C -0.181 4.181 24 C 0.108 3.892 25 C -0.101 4.101 26 N -0.512 5.512 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.016 0.984 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.421 0.579 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.148 0.852 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.803 -8.462 11.891 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.133 3.867 5 C -0.573 4.573 6 H 0.098 0.902 7 C -0.189 4.189 8 N -0.571 5.571 9 Si 0.778 3.222 10 H -0.170 1.170 11 H -0.213 1.213 12 H -0.209 1.209 13 S 2.807 3.193 14 O -0.991 6.991 15 O -1.003 7.003 16 N -0.877 5.877 17 C -0.007 4.007 18 C -0.138 4.138 19 C -0.112 4.112 20 C -0.015 4.015 21 C -0.207 4.207 22 C -0.097 4.097 23 C -0.200 4.200 24 C -0.030 4.030 25 C -0.159 4.159 26 N -0.224 5.224 27 H 0.109 0.891 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.257 0.743 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.166 0.834 43 H 0.181 0.819 44 H 0.180 0.820 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.511 -7.153 12.469 20.426 hybrid contribution 1.185 -0.551 -1.221 1.788 sum 15.696 -7.704 11.248 20.790 Atomic orbital electron populations 1.22201 0.96108 1.03148 1.01307 1.21239 0.94509 0.81221 1.03309 1.57608 1.79319 1.24095 1.22591 1.18771 0.96670 0.91072 0.80162 1.21852 1.07192 1.20339 1.07892 0.90205 1.25821 1.00357 0.94731 0.97963 1.70096 1.40041 1.25981 1.21005 0.85577 0.79563 0.78681 0.78414 1.16962 1.21295 1.20904 1.01138 0.73148 0.72790 0.72246 1.93527 1.66365 1.79611 1.59590 1.93527 1.87311 1.33805 1.85695 1.55567 1.23879 1.69895 1.38350 1.21387 0.85824 0.99933 0.93583 1.21508 0.91144 1.02440 0.98663 1.20526 0.89665 1.03030 0.97981 1.21287 0.96045 0.93298 0.90867 1.22252 0.94816 1.01109 1.02494 1.21974 0.97167 0.96480 0.94051 1.22278 1.00932 0.99477 0.97320 1.21828 0.89093 0.94754 0.97330 1.20775 1.03498 1.01231 0.90363 1.67287 1.24639 1.21904 1.08525 0.89120 0.93444 0.93494 0.89896 0.89679 0.96641 0.96224 0.92798 0.74326 0.92751 0.90438 0.90364 0.91045 0.90508 0.88850 0.83390 0.81897 0.82047 0.89839 0.91476 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.19 10.24 71.98 0.74 -4.45 16 2 C 0.12 4.06 6.02 86.38 0.52 4.58 16 3 N -0.99 -40.61 2.84 -519.84 -1.48 -42.09 16 4 C 0.26 12.86 5.46 85.64 0.47 13.33 16 5 C -0.53 -26.69 8.51 25.60 0.22 -26.47 16 6 H 0.08 3.68 6.47 -2.91 -0.02 3.66 16 7 C 0.01 0.55 5.46 84.65 0.46 1.01 16 8 N -0.93 -53.52 13.29 21.45 0.28 -53.23 16 9 Si 0.95 40.07 29.54 68.60 2.03 42.10 16 10 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 11 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 13 S 2.80 112.13 6.07 -56.49 -0.34 111.79 16 14 O -1.01 -40.70 17.17 -128.00 -2.20 -42.90 16 15 O -1.02 -49.92 16.01 -128.00 -2.05 -51.97 16 16 N -1.11 -35.61 6.06 -187.50 -1.14 -36.75 16 17 C 0.12 3.90 6.21 86.38 0.54 4.44 16 18 C -0.10 -2.60 5.21 30.59 0.16 -2.44 16 19 C -0.07 -1.89 5.61 29.85 0.17 -1.73 16 20 C 0.12 3.03 6.18 42.55 0.26 3.29 16 21 C -0.19 -3.72 9.71 22.36 0.22 -3.51 16 22 C -0.07 -1.11 10.18 22.47 0.23 -0.88 16 23 C -0.18 -2.82 9.74 22.36 0.22 -2.60 16 24 C 0.11 2.19 6.78 42.53 0.29 2.48 16 25 C -0.10 -1.45 10.17 71.23 0.72 -0.73 16 26 N -0.51 -13.36 9.79 -172.08 -1.69 -15.04 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 1.54 7.97 -2.39 -0.02 1.52 16 29 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 30 H 0.08 2.70 8.09 -2.39 -0.02 2.68 16 31 H 0.08 2.38 7.78 -2.39 -0.02 2.36 16 32 H 0.02 0.82 8.10 -2.38 -0.02 0.80 16 33 H 0.02 1.13 6.77 -2.39 -0.02 1.11 16 34 H 0.26 14.35 8.31 -92.71 -0.77 13.57 16 35 H 0.42 10.71 8.65 -96.74 -0.84 9.87 16 36 H 0.05 2.06 7.75 -2.39 -0.02 2.04 16 37 H 0.08 2.68 5.86 -2.39 -0.01 2.67 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 1.97 7.94 -2.39 -0.02 1.95 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.09 2.21 7.87 -2.39 -0.02 2.19 16 42 H 0.15 2.43 7.95 -2.91 -0.02 2.41 16 43 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 44 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 45 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 47 H 0.10 0.86 8.08 -2.39 -0.02 0.84 16 Total: -1.00 -71.49 400.09 -1.24 -72.74 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.13 Total: 29.03 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 5.21 Total: -13.68 kcal Atomic # 7 Polarization: -143.10 SS G_CDS: -4.01 Total: -147.11 kcal Atomic # 8 Polarization: -90.62 SS G_CDS: -4.25 Total: -94.87 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Atomic # 16 Polarization: 112.13 SS G_CDS: -0.34 Total: 111.79 kcal Total: -71.49 -1.24 -72.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351993134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.695 kcal (2) G-P(sol) polarization free energy of solvation -71.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds