Wall clock time and date at job start Wed Apr 1 2020 00:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47255 * 2 1 4 4 C 1.50699 * 109.47348 * 119.99894 * 2 1 3 5 5 H 1.08004 * 119.99769 * 120.00183 * 4 2 1 6 6 C 1.37875 * 120.00186 * 300.00576 * 4 2 1 7 7 N 1.31508 * 119.99947 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00207 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47111 * 59.99428 * 8 6 4 10 10 H 1.48496 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47238 * 299.99958 * 8 6 4 12 12 N 1.46898 * 109.47212 * 240.00343 * 2 1 3 13 13 C 1.46901 * 111.00053 * 183.95510 * 12 2 1 14 14 C 1.46899 * 111.00101 * 59.99712 * 12 2 1 15 15 C 1.50706 * 109.47005 * 189.99956 * 14 12 2 16 16 C 1.39870 * 126.03571 * 90.02521 * 15 14 12 17 17 N 1.30836 * 108.20019 * 179.71573 * 16 15 14 18 18 N 1.40090 * 108.20534 * 0.24683 * 17 16 15 19 19 C 1.46502 * 126.03499 * 179.97438 * 18 17 16 20 20 C 1.53003 * 108.89343 * 226.33887 * 19 18 17 21 21 C 1.52972 * 108.93134 * 107.78693 * 19 18 17 22 22 C 1.55099 * 108.66676 * 209.33230 * 21 19 18 23 23 S 1.83848 * 101.18723 * 41.87092 * 22 21 19 24 24 O 1.42103 * 109.61320 * 211.05134 * 23 22 21 25 25 O 1.42103 * 109.77988 * 77.14269 * 23 22 21 26 26 C 1.53617 * 108.93486 * 345.01954 * 19 18 17 27 27 C 1.34942 * 107.92509 * 359.97438 * 18 17 16 28 28 H 1.08997 * 109.47463 * 299.99800 * 1 2 3 29 29 H 1.08998 * 109.47445 * 59.99764 * 1 2 3 30 30 H 1.09000 * 109.47255 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00271 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.46917 * 296.04092 * 13 12 2 33 33 H 1.08998 * 109.47418 * 56.04594 * 13 12 2 34 34 H 1.09005 * 109.47256 * 176.04807 * 13 12 2 35 35 H 1.09002 * 109.47243 * 70.00339 * 14 12 2 36 36 H 1.08996 * 109.47083 * 309.99731 * 14 12 2 37 37 H 1.08002 * 125.90382 * 359.97438 * 16 15 14 38 38 H 1.08999 * 109.47381 * 60.70455 * 20 19 18 39 39 H 1.09005 * 109.46950 * 180.70335 * 20 19 18 40 40 H 1.08994 * 109.47036 * 300.69596 * 20 19 18 41 41 H 1.09007 * 109.65186 * 329.17415 * 21 19 18 42 42 H 1.08997 * 109.65207 * 89.49305 * 21 19 18 43 43 H 1.08998 * 111.07744 * 283.89562 * 22 21 19 44 44 H 1.08991 * 111.07811 * 159.85096 * 22 21 19 45 45 H 1.08990 * 110.27304 * 242.07315 * 26 19 18 46 46 H 1.09004 * 110.26883 * 4.04907 * 26 19 18 47 47 H 1.08002 * 126.12737 * 180.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8269 -0.4200 5.2204 11 1 1.8259 -2.5203 4.0077 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7945 -1.1870 14 6 1.5486 -0.0263 -2.4211 15 6 1.8580 -0.8910 -3.6159 16 6 1.0229 -1.8726 -4.1596 17 7 1.6318 -2.4026 -5.1893 18 7 2.8777 -1.7779 -5.3302 19 6 3.8783 -2.0728 -6.3589 20 6 5.2510 -2.1949 -5.6943 21 6 3.9158 -0.9172 -7.3605 22 6 4.3381 -1.4740 -8.7452 23 16 3.3684 -3.0345 -8.8130 24 8 4.0788 -4.0049 -9.5699 25 8 2.0118 -2.7447 -9.1209 26 6 3.5271 -3.4109 -7.0267 27 6 2.9935 -0.8566 -4.3511 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.7094 1.1616 3.4844 32 1 3.9192 0.2044 -1.2300 33 1 3.8070 -1.2915 -0.2719 34 1 3.8164 -1.3720 -2.0501 35 1 2.0518 0.9347 -2.5280 36 1 0.4722 0.1324 -2.3564 37 1 0.0429 -2.1433 -3.7951 38 1 5.2326 -3.0084 -4.9691 39 1 6.0051 -2.4021 -6.4536 40 1 5.4934 -1.2611 -5.1870 41 1 2.9274 -0.4634 -7.4338 42 1 4.6369 -0.1694 -7.0307 43 1 5.4087 -1.6761 -8.7765 44 1 4.0454 -0.7954 -9.5463 45 1 4.3246 -4.1355 -6.8629 46 1 2.5843 -3.7926 -6.6347 47 1 3.8392 -0.2054 -4.1862 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353417345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:43 Heat of formation + Delta-G solvation = 7.697597 kcal Electronic energy + Delta-G solvation = -28309.743943 eV Core-core repulsion = 24428.609342 eV Total energy + Delta-G solvation = -3881.134600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.38296 -39.02690 -38.30751 -38.07766 -37.12422 -34.86759 -32.79257 -32.00187 -31.07101 -30.55584 -28.86893 -28.08544 -26.49148 -25.58464 -24.58958 -23.11200 -21.61084 -20.77343 -20.43894 -19.89520 -18.48022 -18.22663 -17.48553 -17.23551 -16.97000 -16.73171 -16.05060 -15.84233 -15.56945 -15.40198 -15.30247 -15.11214 -14.46765 -14.29507 -14.10821 -13.91790 -13.72796 -13.51232 -13.42989 -13.39737 -13.23590 -13.16815 -12.97902 -12.90406 -12.81563 -12.66827 -12.58879 -12.30679 -12.16108 -12.03901 -11.87595 -11.83073 -11.60982 -11.41600 -11.27173 -10.81949 -10.48055 -10.29003 -9.33085 -8.76484 -8.07064 -6.18437 -1.02307 0.94905 1.36221 1.43769 1.45685 1.52834 1.56119 1.88477 2.45465 2.49488 2.95003 3.07108 3.21003 3.30841 3.48927 3.61133 3.69007 3.93843 3.95686 4.04613 4.29025 4.32488 4.50655 4.54240 4.60507 4.66182 4.68861 4.76357 4.79885 4.81162 4.84003 4.91998 5.03583 5.05866 5.11663 5.14057 5.20359 5.30676 5.35527 5.57505 5.72582 5.77972 5.87002 6.15363 6.32769 6.50206 6.77521 6.85428 6.97865 7.50649 8.98194 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028225 B = 0.002302 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.803163 B =12158.826789 C =12451.251556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.218 3.782 3 H -0.036 1.036 4 C -0.517 4.517 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.541 5.541 13 C 0.047 3.953 14 C 0.130 3.870 15 C -0.228 4.228 16 C 0.057 3.943 17 N -0.327 5.327 18 N -0.367 5.367 19 C 0.196 3.804 20 C -0.167 4.167 21 C -0.140 4.140 22 C -0.538 4.538 23 S 2.380 3.620 24 O -0.969 6.969 25 O -0.976 6.976 26 C -0.595 4.595 27 C 0.071 3.929 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.261 0.739 32 H 0.010 0.990 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.028 0.972 36 H 0.073 0.927 37 H 0.184 0.816 38 H 0.062 0.938 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.144 0.856 43 H 0.182 0.818 44 H 0.165 0.835 45 H 0.173 0.827 46 H 0.142 0.858 47 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.138 -2.277 -23.094 26.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 H -0.018 1.018 4 C -0.555 4.555 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.266 5.266 13 C -0.102 4.102 14 C 0.001 3.999 15 C -0.239 4.239 16 C -0.129 4.129 17 N -0.148 5.148 18 N -0.150 5.150 19 C 0.112 3.888 20 C -0.225 4.225 21 C -0.179 4.179 22 C -0.671 4.671 23 S 2.567 3.433 24 O -0.966 6.966 25 O -0.973 6.973 26 C -0.724 4.724 27 C -0.076 4.076 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.201 0.799 38 H 0.081 0.919 39 H 0.139 0.861 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.162 0.838 43 H 0.200 0.800 44 H 0.183 0.817 45 H 0.190 0.810 46 H 0.160 0.840 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 11.398 -4.070 -24.762 27.561 hybrid contribution 0.274 1.327 2.641 2.968 sum 11.672 -2.744 -22.121 25.161 Atomic orbital electron populations 1.21673 0.97478 0.99126 0.99737 1.19009 0.92526 0.90177 0.87204 1.01817 1.21416 1.30930 1.12144 0.91050 0.92466 1.25672 0.95473 0.95779 1.01767 1.70007 1.37832 1.24185 1.23990 0.85643 0.78762 0.78622 0.78771 1.19605 1.21074 1.20006 1.62043 1.10274 1.52596 1.01685 1.22124 0.88028 0.98670 1.01359 1.20299 1.00296 0.92675 0.86597 1.20010 0.96786 1.05167 1.01957 1.23914 1.00733 0.95044 0.93183 1.77112 0.94066 1.22095 1.21481 1.48858 1.13400 1.28938 1.23829 1.20982 0.88135 0.92118 0.87588 1.22582 0.92317 1.04721 1.02888 1.22690 1.06068 0.98240 0.90905 1.30436 1.15801 1.16949 1.03958 1.09227 0.76102 0.79848 0.78107 1.93575 1.74549 1.60289 1.68211 1.93601 1.35114 1.85424 1.83138 1.30738 1.13892 1.04568 1.23240 1.22498 0.99842 0.95154 0.90077 0.92354 0.94801 0.95236 0.93018 0.97141 0.93019 0.91224 0.95349 0.90890 0.79940 0.91882 0.86080 0.89359 0.89901 0.83833 0.79984 0.81709 0.80963 0.84030 0.78562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.76 71.98 0.63 -5.30 16 2 C 0.22 10.91 2.06 44.17 0.09 11.00 16 3 H -0.04 -1.98 8.14 -2.39 -0.02 -2.00 16 4 C -0.52 -28.17 7.88 25.60 0.20 -27.97 16 5 H 0.06 3.11 6.41 -2.91 -0.02 3.09 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -52.66 11.32 21.45 0.24 -52.42 16 8 Si 0.96 43.43 29.54 68.60 2.03 45.45 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 N -0.54 -22.45 4.61 -906.04 -4.18 -26.63 16 13 C 0.05 1.72 9.00 127.69 1.15 2.87 16 14 C 0.13 4.46 5.26 85.56 0.45 4.91 16 15 C -0.23 -6.58 4.99 -20.14 -0.10 -6.68 16 16 C 0.06 1.69 11.96 85.24 1.02 2.70 16 17 N -0.33 -9.22 10.80 -57.02 -0.62 -9.84 16 18 N -0.37 -7.74 3.34 -306.93 -1.03 -8.77 16 19 C 0.20 2.40 1.08 3.80 0.00 2.40 16 20 C -0.17 -1.13 7.76 71.98 0.56 -0.58 16 21 C -0.14 -0.99 5.36 31.30 0.17 -0.82 16 22 C -0.54 -1.87 7.46 72.70 0.54 -1.33 16 23 S 2.38 34.24 6.05 -56.49 -0.34 33.90 16 24 O -0.97 -19.55 18.16 -127.50 -2.32 -21.86 16 25 O -0.98 -24.29 18.16 -127.50 -2.32 -26.61 16 26 C -0.60 -8.07 6.61 72.19 0.48 -7.59 16 27 C 0.07 1.57 9.03 83.54 0.75 2.32 16 28 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 29 H 0.03 1.43 6.20 -2.39 -0.01 1.42 16 30 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.05 2.12 6.10 -2.39 -0.01 2.11 16 34 H 0.07 2.14 6.31 -2.38 -0.02 2.13 16 35 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 36 H 0.07 2.60 5.83 -2.39 -0.01 2.58 16 37 H 0.18 5.09 8.06 -2.91 -0.02 5.07 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.12 -0.05 8.14 -2.38 -0.02 -0.07 16 40 H 0.09 0.43 7.26 -2.39 -0.02 0.41 16 41 H 0.08 0.95 8.04 -2.38 -0.02 0.94 16 42 H 0.14 0.16 7.76 -2.39 -0.02 0.14 16 43 H 0.18 -0.68 8.14 -2.39 -0.02 -0.70 16 44 H 0.17 0.08 8.14 -2.39 -0.02 0.06 16 45 H 0.17 1.35 7.63 -2.39 -0.02 1.33 16 46 H 0.14 2.80 6.44 -2.38 -0.02 2.78 16 47 H 0.20 3.02 7.55 -2.91 -0.02 3.00 16 Total: -1.00 -81.20 378.91 -1.16 -82.36 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 0.97 Total: 7.41 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 6.40 Total: -22.98 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -5.58 Total: -97.67 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -4.63 Total: -48.47 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 34.24 SS G_CDS: -0.34 Total: 33.90 kcal Total: -81.20 -1.16 -82.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353417345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.053 kcal (2) G-P(sol) polarization free energy of solvation -81.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds