Wall clock time and date at job start Wed Apr 1 2020 00:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47134 * 2 1 4 4 C 1.50710 * 109.46893 * 119.99400 * 2 1 3 5 5 H 1.08003 * 119.99391 * 119.99927 * 4 2 1 6 6 C 1.37875 * 119.99786 * 300.00333 * 4 2 1 7 7 N 1.31513 * 120.00308 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99662 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47376 * 89.99405 * 8 6 4 10 10 H 1.48499 * 109.47068 * 209.99968 * 8 6 4 11 11 H 1.48501 * 109.46960 * 329.99568 * 8 6 4 12 12 N 1.46897 * 109.47360 * 239.99281 * 2 1 3 13 13 C 1.46899 * 111.00412 * 183.95426 * 12 2 1 14 14 C 1.46902 * 110.99598 * 60.00389 * 12 2 1 15 15 C 1.50703 * 109.46870 * 189.99985 * 14 12 2 16 16 C 1.39875 * 126.04085 * 90.02443 * 15 14 12 17 17 N 1.30829 * 108.20298 * 179.73658 * 16 15 14 18 18 N 1.40087 * 108.20855 * 359.97438 * 17 16 15 19 19 C 1.46500 * 126.04101 * 179.97438 * 18 17 16 20 20 C 1.53002 * 108.89952 * 103.70834 * 19 18 17 21 21 C 1.52970 * 108.93395 * 222.26534 * 19 18 17 22 22 C 1.55094 * 108.66983 * 90.80312 * 21 19 18 23 23 S 1.83848 * 101.18673 * 41.87485 * 22 21 19 24 24 O 1.42101 * 109.61266 * 211.05380 * 23 22 21 25 25 O 1.42093 * 109.61463 * 77.09483 * 23 22 21 26 26 C 1.53624 * 108.92961 * 345.02387 * 19 18 17 27 27 C 1.34946 * 107.92254 * 0.02562 * 18 17 16 28 28 H 1.08997 * 109.46958 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47141 * 300.00848 * 1 2 3 30 30 H 1.08996 * 109.46802 * 60.00296 * 1 2 3 31 31 H 0.97002 * 119.99803 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47373 * 296.05585 * 13 12 2 33 33 H 1.09002 * 109.46732 * 56.04756 * 13 12 2 34 34 H 1.08991 * 109.47530 * 176.04792 * 13 12 2 35 35 H 1.08997 * 109.47529 * 70.00174 * 14 12 2 36 36 H 1.08999 * 109.47098 * 309.99397 * 14 12 2 37 37 H 1.08004 * 125.89555 * 359.71602 * 16 15 14 38 38 H 1.08995 * 109.46984 * 59.30124 * 20 19 18 39 39 H 1.08998 * 109.47184 * 179.30188 * 20 19 18 40 40 H 1.09003 * 109.46600 * 299.29840 * 20 19 18 41 41 H 1.08999 * 109.65573 * 210.64614 * 21 19 18 42 42 H 1.09003 * 109.64952 * 330.96721 * 21 19 18 43 43 H 1.09000 * 111.08212 * 283.89711 * 22 21 19 44 44 H 1.08996 * 111.08105 * 159.85168 * 22 21 19 45 45 H 1.09006 * 110.27157 * 0.59927 * 26 19 18 46 46 H 1.09003 * 110.26889 * 122.66239 * 26 19 18 47 47 H 1.07999 * 126.12479 * 180.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8304 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.6304 -0.5437 4.4120 10 1 1.3442 -0.9486 5.1124 11 1 2.4878 -2.5650 3.7125 12 7 2.0197 -0.6926 -1.1993 13 6 3.4851 -0.7947 -1.1869 14 6 1.5487 -0.0265 -2.4210 15 6 1.8581 -0.8914 -3.6158 16 6 1.0230 -1.8731 -4.1594 17 7 1.6321 -2.4034 -5.1887 18 7 2.8755 -1.7747 -5.3333 19 6 3.8755 -2.0686 -6.3628 20 6 3.8354 -0.9651 -7.4220 21 6 5.2625 -2.0836 -5.7178 22 6 5.5790 -3.5295 -5.2545 23 16 4.9550 -4.5059 -6.6818 24 8 4.4875 -5.7688 -6.2279 25 8 5.8844 -4.4307 -7.7540 26 6 3.5279 -3.4096 -7.0268 27 6 2.9901 -0.8513 -4.3560 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7093 1.1620 3.4843 32 1 3.9193 0.2042 -1.2299 33 1 3.8069 -1.2916 -0.2717 34 1 3.8164 -1.3723 -2.0497 35 1 2.0520 0.9344 -2.5281 36 1 0.4723 0.1322 -2.3564 37 1 0.0446 -2.1462 -3.7926 38 1 4.0458 -0.0039 -6.9532 39 1 4.5850 -1.1682 -8.1868 40 1 2.8469 -0.9374 -7.8804 41 1 6.0081 -1.7598 -6.4440 42 1 5.2745 -1.4126 -4.8588 43 1 5.0354 -3.7769 -4.3427 44 1 6.6512 -3.6724 -5.1206 45 1 2.6193 -3.8234 -6.5892 46 1 3.4041 -3.2779 -8.1017 47 1 3.8339 -0.1969 -4.1940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353417346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:47 Heat of formation + Delta-G solvation = 34.437778 kcal Electronic energy + Delta-G solvation = -28555.735274 eV Core-core repulsion = 24675.760215 eV Total energy + Delta-G solvation = -3879.975059 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47436 -38.14994 -37.38341 -36.76825 -36.37497 -32.99003 -31.89106 -30.79883 -30.40109 -28.93063 -28.34356 -26.58188 -24.79118 -24.61049 -23.17783 -22.33827 -20.21048 -19.77156 -19.31562 -19.16185 -17.66685 -16.99926 -16.31130 -16.14389 -16.05332 -15.41123 -15.14370 -14.62713 -14.39689 -14.28570 -13.99784 -13.98212 -13.70774 -13.53252 -13.02811 -12.81928 -12.73446 -12.57702 -12.50370 -12.41396 -12.26685 -12.10816 -12.05431 -11.88824 -11.79398 -11.20242 -11.07487 -10.98203 -10.72594 -10.72072 -10.54379 -10.41710 -10.12670 -10.02298 -9.84313 -9.32282 -8.87771 -8.46944 -8.21955 -7.12748 -6.01510 -4.05803 -0.39490 1.89544 1.99948 2.28478 2.98754 3.07168 3.29570 3.36740 3.41037 3.46148 3.75848 3.81567 3.97618 4.27473 4.38509 4.41386 4.73438 4.82055 4.92931 4.95652 5.05354 5.08610 5.16677 5.23926 5.25655 5.33613 5.47352 5.56334 5.57805 5.75584 6.03905 6.14362 6.29515 6.31289 6.47898 6.76026 6.78034 6.86148 7.03121 7.06293 7.16370 7.53004 7.73673 7.78410 7.83203 8.22605 8.33737 8.61792 9.01039 9.59344 11.05159 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.002698 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.296413 B =10373.648408 C =11141.997656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H -0.003 1.003 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.531 5.531 13 C 0.039 3.961 14 C 0.121 3.879 15 C -0.198 4.198 16 C 0.073 3.927 17 N -0.306 5.306 18 N -0.377 5.377 19 C 0.208 3.792 20 C -0.163 4.163 21 C -0.139 4.139 22 C -0.577 4.577 23 S 2.383 3.617 24 O -0.929 6.929 25 O -0.931 6.931 26 C -0.594 4.594 27 C 0.048 3.952 28 H 0.035 0.965 29 H 0.084 0.916 30 H 0.009 0.991 31 H 0.260 0.740 32 H 0.006 0.994 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.024 0.976 36 H 0.083 0.917 37 H 0.184 0.816 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.168 0.832 46 H 0.147 0.853 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.747 -2.905 -20.709 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.256 5.256 13 C -0.110 4.110 14 C -0.008 4.008 15 C -0.209 4.209 16 C -0.114 4.114 17 N -0.127 5.127 18 N -0.161 5.161 19 C 0.123 3.877 20 C -0.221 4.221 21 C -0.179 4.179 22 C -0.707 4.707 23 S 2.566 3.434 24 O -0.926 6.926 25 O -0.928 6.928 26 C -0.723 4.723 27 C -0.096 4.096 28 H 0.054 0.946 29 H 0.103 0.897 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.101 0.899 37 H 0.200 0.800 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.186 0.814 46 H 0.165 0.835 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.817 -5.010 -22.038 23.914 hybrid contribution 0.354 1.832 2.029 2.757 sum 8.172 -3.178 -20.009 21.846 Atomic orbital electron populations 1.21856 0.97731 0.99705 0.99860 1.19239 0.92336 0.91885 0.85880 0.98567 1.21165 1.30928 1.12230 0.89782 0.91911 1.24922 0.95219 0.95093 0.98986 1.69890 1.36963 1.23070 1.23379 0.86549 0.78423 0.80129 0.82612 1.20864 1.21271 1.19842 1.62115 1.09073 1.52684 1.01742 1.22196 0.89145 0.98318 1.01303 1.20437 1.00996 0.92192 0.87178 1.20217 0.95127 1.04084 1.01473 1.23808 1.00242 0.94659 0.92662 1.77097 0.92850 1.21227 1.21491 1.48585 1.14076 1.29808 1.23664 1.20472 0.85818 0.94765 0.86612 1.22432 1.04246 0.97658 0.97786 1.22652 0.94732 0.96673 1.03807 1.30578 1.12862 1.08384 1.18838 1.09356 0.78335 0.77338 0.78413 1.93646 1.80513 1.37152 1.81284 1.93636 1.60010 1.87529 1.51629 1.30811 1.21788 1.09009 1.10666 1.22127 1.00327 0.95918 0.91265 0.94607 0.89739 0.97202 0.93018 0.97521 0.90724 0.94053 0.95756 0.89920 0.79960 0.90837 0.89800 0.90691 0.87101 0.86995 0.83974 0.83798 0.81407 0.83473 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.76 37.16 0.33 -2.82 16 2 C 0.21 5.18 2.06 -68.86 -0.14 5.04 16 3 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 4 C -0.50 -13.44 7.88 -34.44 -0.27 -13.71 16 5 H 0.06 1.68 6.41 -52.48 -0.34 1.35 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.53 -10.89 4.61 -237.72 -1.10 -11.99 16 13 C 0.04 0.73 9.00 60.06 0.54 1.27 16 14 C 0.12 2.06 5.26 -4.97 -0.03 2.04 16 15 C -0.20 -2.86 4.98 -105.05 -0.52 -3.39 16 16 C 0.07 1.03 11.96 -17.37 -0.21 0.82 16 17 N -0.31 -4.12 10.81 30.63 0.33 -3.79 16 18 N -0.38 -4.16 3.41 -48.36 -0.16 -4.32 16 19 C 0.21 1.61 1.10 -131.51 -0.14 1.46 16 20 C -0.16 -0.98 8.17 37.16 0.30 -0.67 16 21 C -0.14 -0.83 5.38 -25.64 -0.14 -0.96 16 22 C -0.58 -3.74 7.46 38.26 0.29 -3.46 16 23 S 2.38 19.90 6.05 -107.50 -0.65 19.25 16 24 O -0.93 -11.77 18.16 -57.67 -1.05 -12.81 16 25 O -0.93 -9.71 18.16 -57.67 -1.05 -10.76 16 26 C -0.59 -4.47 6.60 37.48 0.25 -4.22 16 27 C 0.05 0.57 8.82 -17.22 -0.15 0.42 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 30 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.01 0.12 8.14 -51.93 -0.42 -0.31 16 33 H 0.07 1.53 6.10 -51.93 -0.32 1.21 16 34 H 0.04 0.66 6.33 -51.93 -0.33 0.33 16 35 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.08 1.43 5.83 -51.93 -0.30 1.13 16 37 H 0.18 2.33 8.06 -52.48 -0.42 1.90 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.32 8.11 -51.93 -0.42 -0.10 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.11 0.38 7.81 -51.93 -0.41 -0.03 16 42 H 0.11 0.66 6.19 -51.93 -0.32 0.34 16 43 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.17 1.56 6.47 -51.93 -0.34 1.23 16 46 H 0.15 0.75 7.63 -51.93 -0.40 0.35 16 47 H 0.17 1.58 7.26 -52.49 -0.38 1.20 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -35.02 378.00 -9.49 -44.51 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.12 Total: -0.70 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 0.00 Total: -16.69 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.30 Total: -44.52 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -2.09 Total: -23.58 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 19.90 SS G_CDS: -0.65 Total: 19.25 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.02 -9.49 -44.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353417346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.947 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds