Wall clock time and date at job start Wed Apr 1 2020 00:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47134 * 2 1 4 4 C 1.50710 * 109.46893 * 119.99400 * 2 1 3 5 5 H 1.08003 * 119.99391 * 119.99927 * 4 2 1 6 6 C 1.37875 * 119.99786 * 300.00333 * 4 2 1 7 7 N 1.31513 * 120.00308 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99662 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47376 * 89.99405 * 8 6 4 10 10 H 1.48499 * 109.47068 * 209.99968 * 8 6 4 11 11 H 1.48501 * 109.46960 * 329.99568 * 8 6 4 12 12 N 1.46897 * 109.47360 * 239.99281 * 2 1 3 13 13 C 1.46899 * 111.00412 * 183.95426 * 12 2 1 14 14 C 1.46902 * 110.99598 * 60.00389 * 12 2 1 15 15 C 1.50703 * 109.46870 * 189.99985 * 14 12 2 16 16 C 1.39875 * 126.04085 * 90.02443 * 15 14 12 17 17 N 1.30829 * 108.20298 * 179.73658 * 16 15 14 18 18 N 1.40087 * 108.20855 * 359.97438 * 17 16 15 19 19 C 1.46500 * 126.04101 * 179.97438 * 18 17 16 20 20 C 1.53002 * 108.89952 * 103.70834 * 19 18 17 21 21 C 1.52970 * 108.93395 * 222.26534 * 19 18 17 22 22 C 1.55094 * 108.66983 * 90.80312 * 21 19 18 23 23 S 1.83848 * 101.18673 * 41.87485 * 22 21 19 24 24 O 1.42101 * 109.61266 * 211.05380 * 23 22 21 25 25 O 1.42093 * 109.61463 * 77.09483 * 23 22 21 26 26 C 1.53624 * 108.92961 * 345.02387 * 19 18 17 27 27 C 1.34946 * 107.92254 * 0.02562 * 18 17 16 28 28 H 1.08997 * 109.46958 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47141 * 300.00848 * 1 2 3 30 30 H 1.08996 * 109.46802 * 60.00296 * 1 2 3 31 31 H 0.97002 * 119.99803 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47373 * 296.05585 * 13 12 2 33 33 H 1.09002 * 109.46732 * 56.04756 * 13 12 2 34 34 H 1.08991 * 109.47530 * 176.04792 * 13 12 2 35 35 H 1.08997 * 109.47529 * 70.00174 * 14 12 2 36 36 H 1.08999 * 109.47098 * 309.99397 * 14 12 2 37 37 H 1.08004 * 125.89555 * 359.71602 * 16 15 14 38 38 H 1.08995 * 109.46984 * 59.30124 * 20 19 18 39 39 H 1.08998 * 109.47184 * 179.30188 * 20 19 18 40 40 H 1.09003 * 109.46600 * 299.29840 * 20 19 18 41 41 H 1.08999 * 109.65573 * 210.64614 * 21 19 18 42 42 H 1.09003 * 109.64952 * 330.96721 * 21 19 18 43 43 H 1.09000 * 111.08212 * 283.89711 * 22 21 19 44 44 H 1.08996 * 111.08105 * 159.85168 * 22 21 19 45 45 H 1.09006 * 110.27157 * 0.59927 * 26 19 18 46 46 H 1.09003 * 110.26889 * 122.66239 * 26 19 18 47 47 H 1.07999 * 126.12479 * 180.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8304 2.6033 8 14 2.3223 -1.1192 4.0081 9 1 3.6304 -0.5437 4.4120 10 1 1.3442 -0.9486 5.1124 11 1 2.4878 -2.5650 3.7125 12 7 2.0197 -0.6926 -1.1993 13 6 3.4851 -0.7947 -1.1869 14 6 1.5487 -0.0265 -2.4210 15 6 1.8581 -0.8914 -3.6158 16 6 1.0230 -1.8731 -4.1594 17 7 1.6321 -2.4034 -5.1887 18 7 2.8755 -1.7747 -5.3333 19 6 3.8755 -2.0686 -6.3628 20 6 3.8354 -0.9651 -7.4220 21 6 5.2625 -2.0836 -5.7178 22 6 5.5790 -3.5295 -5.2545 23 16 4.9550 -4.5059 -6.6818 24 8 4.4875 -5.7688 -6.2279 25 8 5.8844 -4.4307 -7.7540 26 6 3.5279 -3.4096 -7.0268 27 6 2.9901 -0.8513 -4.3560 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7093 1.1620 3.4843 32 1 3.9193 0.2042 -1.2299 33 1 3.8069 -1.2916 -0.2717 34 1 3.8164 -1.3723 -2.0497 35 1 2.0520 0.9344 -2.5281 36 1 0.4723 0.1322 -2.3564 37 1 0.0446 -2.1462 -3.7926 38 1 4.0458 -0.0039 -6.9532 39 1 4.5850 -1.1682 -8.1868 40 1 2.8469 -0.9374 -7.8804 41 1 6.0081 -1.7598 -6.4440 42 1 5.2745 -1.4126 -4.8588 43 1 5.0354 -3.7769 -4.3427 44 1 6.6512 -3.6724 -5.1206 45 1 2.6193 -3.8234 -6.5892 46 1 3.4041 -3.2779 -8.1017 47 1 3.8339 -0.1969 -4.1940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353417346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:46 Heat of formation + Delta-G solvation = 8.432866 kcal Electronic energy + Delta-G solvation = -28556.862932 eV Core-core repulsion = 24675.760215 eV Total energy + Delta-G solvation = -3881.102717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.40144 -39.01765 -38.36083 -38.00446 -37.15430 -34.86069 -32.63851 -31.93091 -31.42863 -30.56398 -28.94611 -28.06940 -26.42851 -25.31322 -24.66789 -23.26851 -21.60458 -20.76214 -20.45690 -19.91240 -18.51401 -18.21477 -17.63127 -17.03916 -16.83918 -16.80383 -16.21100 -15.83840 -15.47650 -15.37735 -15.29248 -14.84697 -14.77373 -14.36917 -14.25572 -14.06014 -13.62193 -13.53302 -13.38854 -13.31283 -13.25105 -13.18542 -12.91192 -12.87610 -12.71910 -12.59840 -12.56296 -12.45598 -12.30303 -12.02536 -11.88739 -11.81905 -11.61311 -11.41094 -11.32326 -10.80256 -10.48508 -10.25994 -9.31743 -8.75858 -8.07172 -6.18318 -1.03843 0.95711 1.36114 1.42952 1.45188 1.51811 1.55035 1.89413 2.45532 2.45676 2.84685 3.16780 3.21159 3.21843 3.43110 3.67084 3.71271 3.92299 3.95863 4.04570 4.30245 4.30517 4.44403 4.55439 4.57774 4.65872 4.71214 4.77098 4.78180 4.81498 4.83198 4.88963 5.04963 5.05360 5.12122 5.15659 5.16399 5.31477 5.36323 5.58120 5.74074 5.78620 5.87624 6.14740 6.33261 6.50622 6.78574 6.86084 6.98451 7.50980 8.98235 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.002698 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.296413 B =10373.648408 C =11141.997656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.218 3.782 3 H -0.036 1.036 4 C -0.516 4.516 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.541 5.541 13 C 0.045 3.955 14 C 0.129 3.871 15 C -0.225 4.225 16 C 0.057 3.943 17 N -0.322 5.322 18 N -0.366 5.366 19 C 0.197 3.803 20 C -0.163 4.163 21 C -0.142 4.142 22 C -0.564 4.564 23 S 2.391 3.609 24 O -0.982 6.982 25 O -0.953 6.953 26 C -0.589 4.589 27 C 0.066 3.934 28 H 0.029 0.971 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.260 0.740 32 H 0.010 0.990 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.184 0.816 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.146 0.854 42 H 0.121 0.879 43 H 0.134 0.866 44 H 0.171 0.829 45 H 0.151 0.849 46 H 0.171 0.829 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.790 -2.477 -22.075 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 H -0.019 1.019 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.265 5.265 13 C -0.104 4.104 14 C 0.001 3.999 15 C -0.237 4.237 16 C -0.128 4.128 17 N -0.143 5.143 18 N -0.149 5.149 19 C 0.113 3.887 20 C -0.221 4.221 21 C -0.181 4.181 22 C -0.696 4.696 23 S 2.578 3.422 24 O -0.979 6.979 25 O -0.950 6.950 26 C -0.718 4.718 27 C -0.081 4.081 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.201 0.799 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.164 0.836 42 H 0.140 0.860 43 H 0.152 0.848 44 H 0.189 0.811 45 H 0.169 0.831 46 H 0.189 0.811 47 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 9.867 -4.625 -23.457 25.864 hybrid contribution -0.241 1.733 2.344 2.925 sum 9.626 -2.892 -21.113 23.383 Atomic orbital electron populations 1.21671 0.97458 0.99152 0.99727 1.19011 0.92541 0.90148 0.87223 1.01855 1.21460 1.30823 1.12126 0.91064 0.92432 1.25660 0.95461 0.95781 1.01749 1.70016 1.37883 1.24233 1.23908 0.85599 0.78016 0.79059 0.79195 1.20148 1.21075 1.19561 1.62049 1.10270 1.52549 1.01670 1.22145 0.88047 0.98702 1.01470 1.20306 1.00306 0.92672 0.86650 1.19979 0.96843 1.05141 1.01733 1.23918 1.00729 0.95005 0.93173 1.77089 0.94050 1.21757 1.21392 1.48906 1.13687 1.28648 1.23688 1.20973 0.85887 0.95319 0.86525 1.22486 1.04629 0.97216 0.97751 1.22848 0.94137 0.96063 1.05064 1.30508 1.14369 1.08051 1.16628 1.08953 0.78018 0.76749 0.78529 1.93577 1.81449 1.40718 1.82134 1.93600 1.60568 1.87839 1.52961 1.30749 1.20214 1.08600 1.12267 1.22455 1.00039 0.95405 0.90187 0.95184 0.92414 0.94763 0.93045 0.97167 0.93023 0.91009 0.95456 0.90862 0.79886 0.89889 0.87043 0.91797 0.83578 0.86045 0.84775 0.81110 0.83147 0.81080 0.78653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.76 71.98 0.63 -5.23 16 2 C 0.22 10.79 2.06 44.17 0.09 10.88 16 3 H -0.04 -1.98 8.14 -2.38 -0.02 -2.00 16 4 C -0.52 -27.97 7.88 25.60 0.20 -27.77 16 5 H 0.06 3.12 6.41 -2.91 -0.02 3.10 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -52.46 11.32 21.45 0.24 -52.21 16 8 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 N -0.54 -22.01 4.61 -906.03 -4.18 -26.19 16 13 C 0.04 1.62 9.00 127.69 1.15 2.77 16 14 C 0.13 4.31 5.26 85.56 0.45 4.76 16 15 C -0.23 -6.19 4.98 -20.14 -0.10 -6.29 16 16 C 0.06 1.59 11.96 85.24 1.02 2.60 16 17 N -0.32 -8.29 10.81 -57.02 -0.62 -8.91 16 18 N -0.37 -7.12 3.41 -306.93 -1.05 -8.16 16 19 C 0.20 2.37 1.10 3.80 0.00 2.37 16 20 C -0.16 -1.29 8.17 71.98 0.59 -0.71 16 21 C -0.14 -1.05 5.38 31.30 0.17 -0.88 16 22 C -0.56 -5.55 7.46 72.70 0.54 -5.00 16 23 S 2.39 36.59 6.05 -56.49 -0.34 36.25 16 24 O -0.98 -25.14 18.16 -127.52 -2.32 -27.45 16 25 O -0.95 -18.16 18.16 -127.52 -2.32 -20.47 16 26 C -0.59 -7.70 6.60 72.19 0.48 -7.22 16 27 C 0.07 1.37 8.82 83.54 0.74 2.10 16 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 30 H 0.03 1.42 6.20 -2.39 -0.01 1.41 16 31 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 32 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.05 2.09 6.10 -2.39 -0.01 2.07 16 34 H 0.07 2.12 6.33 -2.39 -0.02 2.10 16 35 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 36 H 0.07 2.53 5.83 -2.39 -0.01 2.52 16 37 H 0.18 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.11 0.31 8.11 -2.39 -0.02 0.29 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.15 0.14 7.81 -2.39 -0.02 0.13 16 42 H 0.12 0.79 6.19 -2.39 -0.01 0.78 16 43 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.17 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.15 2.69 6.47 -2.38 -0.02 2.67 16 46 H 0.17 1.32 7.63 -2.39 -0.02 1.30 16 47 H 0.20 2.81 7.26 -2.91 -0.02 2.79 16 Total: -1.00 -77.43 378.00 -1.17 -78.59 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.97 Total: 9.70 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 6.41 Total: -26.51 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -5.60 Total: -95.47 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -4.63 Total: -47.93 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 36.59 SS G_CDS: -0.34 Total: 36.25 kcal Total: -77.43 -1.17 -78.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353417346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.026 kcal (2) G-P(sol) polarization free energy of solvation -77.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds