Wall clock time and date at job start Wed Apr 1 2020 00:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46839 * 2 1 4 4 C 1.50696 * 109.47046 * 239.99876 * 2 1 3 5 5 H 1.08000 * 120.00459 * 245.50134 * 4 2 1 6 6 C 1.37884 * 119.99947 * 65.50870 * 4 2 1 7 7 N 1.31512 * 119.99896 * 9.67206 * 6 4 2 8 8 Si 1.86797 * 119.99893 * 189.67804 * 6 4 2 9 9 H 1.48496 * 109.47320 * 84.99549 * 8 6 4 10 10 H 1.48508 * 109.46989 * 204.99187 * 8 6 4 11 11 H 1.48499 * 109.47267 * 324.98859 * 8 6 4 12 12 N 1.46901 * 109.47263 * 120.00135 * 2 1 3 13 13 C 1.46906 * 110.99959 * 58.94929 * 12 2 1 14 14 C 1.46903 * 110.99658 * 295.00369 * 12 2 1 15 15 C 1.50707 * 109.46559 * 189.99782 * 14 12 2 16 16 C 1.39871 * 126.03634 * 90.02979 * 15 14 12 17 17 N 1.30837 * 108.20131 * 179.97438 * 16 15 14 18 18 N 1.40084 * 108.20421 * 359.97438 * 17 16 15 19 19 C 1.46509 * 126.03770 * 180.02562 * 18 17 16 20 20 C 1.53001 * 108.89851 * 103.70608 * 19 18 17 21 21 C 1.52971 * 108.92810 * 222.26067 * 19 18 17 22 22 C 1.55093 * 108.66807 * 90.80833 * 21 19 18 23 23 S 1.83846 * 101.19179 * 41.86770 * 22 21 19 24 24 O 1.42092 * 109.61596 * 211.05518 * 23 22 21 25 25 O 1.42096 * 109.61222 * 77.09641 * 23 22 21 26 26 C 1.53617 * 108.92895 * 345.02308 * 19 18 17 27 27 C 1.34945 * 107.92802 * 359.75696 * 18 17 16 28 28 H 1.08998 * 109.47225 * 301.14490 * 1 2 3 29 29 H 1.08996 * 109.47128 * 61.15032 * 1 2 3 30 30 H 1.09007 * 109.47005 * 181.14784 * 1 2 3 31 31 H 0.96995 * 120.00113 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.46649 * 60.00518 * 13 12 2 33 33 H 1.08995 * 109.46964 * 179.97438 * 13 12 2 34 34 H 1.08993 * 109.47694 * 300.00588 * 13 12 2 35 35 H 1.09003 * 109.47019 * 309.99491 * 14 12 2 36 36 H 1.08995 * 109.47678 * 70.00021 * 14 12 2 37 37 H 1.07994 * 125.90295 * 359.94424 * 16 15 14 38 38 H 1.08995 * 109.47212 * 59.29662 * 20 19 18 39 39 H 1.08996 * 109.46959 * 179.30215 * 20 19 18 40 40 H 1.08996 * 109.46752 * 299.30191 * 20 19 18 41 41 H 1.09004 * 109.64918 * 210.64787 * 21 19 18 42 42 H 1.08999 * 109.65607 * 330.96194 * 21 19 18 43 43 H 1.09000 * 111.07903 * 283.89303 * 22 21 19 44 44 H 1.08997 * 111.08463 * 159.84890 * 22 21 19 45 45 H 1.08996 * 110.27252 * 0.59493 * 26 19 18 46 46 H 1.09000 * 110.26938 * 122.66140 * 26 19 18 47 47 H 1.08002 * 126.12985 * 180.24040 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5780 -1.6374 -1.1339 6 6 1.7954 -0.1768 -2.4796 7 7 1.3031 1.0373 -2.5934 8 14 2.1736 -1.1787 -4.0101 9 1 1.0192 -2.0586 -4.3235 10 1 2.4221 -0.2627 -5.1524 11 1 3.3801 -2.0109 -3.7715 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0762 1.2460 14 6 1.6487 0.0391 2.4180 15 6 2.3679 -0.5573 3.6005 16 6 3.6230 -0.1698 4.0813 17 7 3.9116 -0.9150 5.1173 18 7 2.8475 -1.8010 5.3291 19 6 2.7636 -2.8097 6.3884 20 6 1.8131 -2.3073 7.4770 21 6 2.1988 -4.1031 5.7984 22 6 3.3788 -4.9808 5.3059 23 16 4.5827 -4.7627 6.6781 24 8 5.9067 -4.8485 6.1692 25 8 4.1903 -5.5586 7.7879 26 6 4.1593 -3.0089 6.9985 27 6 1.9107 -1.5575 4.3889 28 1 -0.3633 0.5315 0.8795 29 1 -0.3633 0.4958 -0.9001 30 1 -0.3633 -1.0275 0.0206 31 1 1.1361 1.4126 -3.4721 32 1 1.8763 -2.6151 0.3647 33 1 1.9060 -2.5658 2.1435 34 1 0.4385 -2.0743 1.2639 35 1 1.9297 1.0870 2.3125 36 1 0.5722 -0.0346 2.5726 37 1 4.2463 0.6094 3.6684 38 1 0.8283 -2.1286 7.0453 39 1 1.7341 -3.0566 8.2645 40 1 2.1997 -1.3786 7.8965 41 1 1.6367 -4.6398 6.5627 42 1 1.5423 -3.8679 4.9607 43 1 3.7827 -4.6034 4.3664 44 1 3.0782 -6.0241 5.2102 45 1 4.8808 -2.3516 6.5134 46 1 4.1335 -2.8165 8.0711 47 1 0.9665 -2.0709 4.2827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353417347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:49 Heat of formation + Delta-G solvation = 32.902018 kcal Electronic energy + Delta-G solvation = -28580.244498 eV Core-core repulsion = 24700.202844 eV Total energy + Delta-G solvation = -3880.041655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47910 -38.16837 -37.39810 -36.94423 -36.37715 -32.91805 -31.89911 -30.81069 -30.51609 -28.52351 -28.18101 -26.48298 -25.14659 -24.77913 -23.46545 -22.36526 -20.18862 -19.75617 -19.26833 -19.10885 -17.65324 -16.99944 -16.21605 -16.14521 -16.02938 -15.46342 -15.09012 -14.62974 -14.41320 -14.26806 -14.12968 -13.81969 -13.76908 -13.54042 -13.04319 -12.85505 -12.72275 -12.66359 -12.55208 -12.41563 -12.22499 -12.12851 -12.05955 -11.93102 -11.51705 -11.23482 -11.10287 -10.95512 -10.84085 -10.79765 -10.71493 -10.55337 -10.30989 -10.08178 -9.75230 -9.32321 -8.96774 -8.35749 -8.25383 -7.10603 -6.03410 -4.02527 -0.39527 1.89302 1.99944 2.28241 2.98605 3.07109 3.31132 3.37930 3.41182 3.46062 3.75654 3.81504 3.97479 4.27269 4.38376 4.43248 4.72896 4.81889 4.92659 4.95666 5.05015 5.08313 5.16408 5.24907 5.26134 5.34217 5.47124 5.55813 5.57119 5.75271 6.03339 6.12542 6.27476 6.32381 6.46832 6.61321 6.73825 6.79509 6.82346 7.01663 7.05737 7.44615 7.59553 7.77896 7.84917 8.12410 8.35993 8.62147 9.02813 9.60897 11.06400 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.002698 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.764147 B =10377.390451 C =11098.814738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.210 3.790 3 H 0.047 0.953 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.891 3.109 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.528 5.528 13 C 0.035 3.965 14 C 0.125 3.875 15 C -0.198 4.198 16 C 0.073 3.927 17 N -0.306 5.306 18 N -0.377 5.377 19 C 0.208 3.792 20 C -0.163 4.163 21 C -0.139 4.139 22 C -0.577 4.577 23 S 2.383 3.617 24 O -0.929 6.929 25 O -0.931 6.931 26 C -0.594 4.594 27 C 0.048 3.952 28 H 0.012 0.988 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.260 0.740 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.014 0.986 35 H 0.074 0.926 36 H 0.029 0.971 37 H 0.184 0.816 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.168 0.832 46 H 0.147 0.853 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 -8.476 21.110 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.104 3.896 3 H 0.065 0.935 4 C -0.540 4.540 5 H 0.080 0.920 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.719 3.281 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.252 5.252 13 C -0.114 4.114 14 C -0.004 4.004 15 C -0.210 4.210 16 C -0.114 4.114 17 N -0.127 5.127 18 N -0.161 5.161 19 C 0.123 3.877 20 C -0.221 4.221 21 C -0.178 4.178 22 C -0.707 4.707 23 S 2.566 3.434 24 O -0.926 6.926 25 O -0.928 6.928 26 C -0.723 4.723 27 C -0.096 4.096 28 H 0.031 0.969 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.033 0.967 35 H 0.093 0.907 36 H 0.047 0.953 37 H 0.201 0.799 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.186 0.814 46 H 0.165 0.835 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.202 -9.333 22.387 24.284 hybrid contribution -2.034 0.352 -2.013 2.883 sum -0.832 -8.981 20.374 22.282 Atomic orbital electron populations 1.22362 1.01462 0.98931 0.99866 1.19329 0.89103 0.95166 0.86048 0.93542 1.21085 1.35000 1.08146 0.89797 0.91995 1.24910 0.95513 0.94663 0.98928 1.69959 1.45538 1.13888 1.23725 0.86630 0.78655 0.80107 0.82736 1.20782 1.21393 1.19909 1.62352 1.59444 1.01720 1.01638 1.22228 0.96607 0.91726 1.00805 1.20341 0.95133 0.97514 0.87424 1.20223 0.97543 1.01890 1.01328 1.23822 0.95911 0.98726 0.92902 1.77103 1.09526 1.05573 1.20455 1.48590 1.14549 1.28931 1.24062 1.20473 0.93948 0.87025 0.86226 1.22433 0.99169 1.03119 0.97414 1.22649 0.98334 0.92928 1.03931 1.30578 1.13177 1.08733 1.18182 1.09356 0.77102 0.78802 0.78181 1.93645 1.33558 1.85450 1.79927 1.93636 1.84240 1.65571 1.49362 1.30808 1.04767 1.25605 1.11085 1.22116 0.96061 0.99723 0.91724 0.96899 0.91242 0.94911 0.93012 0.91182 0.94122 0.96737 0.90709 0.95273 0.79911 0.90843 0.89799 0.90688 0.87110 0.87013 0.83964 0.83804 0.81401 0.83474 0.81633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.78 8.36 37.16 0.31 -3.47 16 2 C 0.21 5.04 2.20 -68.86 -0.15 4.88 16 3 H 0.05 1.25 7.98 -51.93 -0.41 0.83 16 4 C -0.50 -13.37 7.97 -34.44 -0.27 -13.65 16 5 H 0.06 1.66 6.56 -52.49 -0.34 1.32 16 6 C 0.06 1.66 5.19 -17.82 -0.09 1.57 16 7 N -0.89 -25.14 12.17 55.43 0.67 -24.46 16 8 Si 0.89 21.05 29.55 -169.99 -5.02 16.03 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.53 -10.67 4.73 -237.72 -1.13 -11.79 16 13 C 0.03 0.64 8.67 60.07 0.52 1.16 16 14 C 0.13 2.09 4.89 -4.97 -0.02 2.07 16 15 C -0.20 -2.84 4.98 -105.05 -0.52 -3.37 16 16 C 0.07 1.02 11.96 -17.36 -0.21 0.82 16 17 N -0.31 -4.10 10.81 30.62 0.33 -3.77 16 18 N -0.38 -4.13 3.41 -48.36 -0.16 -4.29 16 19 C 0.21 1.59 1.10 -131.51 -0.14 1.45 16 20 C -0.16 -0.97 8.17 37.16 0.30 -0.66 16 21 C -0.14 -0.82 5.38 -25.64 -0.14 -0.95 16 22 C -0.58 -3.72 7.46 38.26 0.29 -3.43 16 23 S 2.38 19.85 6.05 -107.50 -0.65 19.19 16 24 O -0.93 -11.76 18.16 -57.67 -1.05 -12.80 16 25 O -0.93 -9.69 18.16 -57.67 -1.05 -10.74 16 26 C -0.59 -4.45 6.60 37.48 0.25 -4.20 16 27 C 0.05 0.57 8.72 -17.22 -0.15 0.42 16 28 H 0.01 0.25 6.81 -51.93 -0.35 -0.11 16 29 H 0.07 1.75 6.89 -51.93 -0.36 1.39 16 30 H 0.03 0.71 6.32 -51.92 -0.33 0.38 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.07 1.41 6.43 -51.93 -0.33 1.07 16 33 H 0.04 0.63 6.11 -51.93 -0.32 0.32 16 34 H 0.01 0.26 6.26 -51.93 -0.32 -0.07 16 35 H 0.07 1.27 8.00 -51.93 -0.42 0.86 16 36 H 0.03 0.48 6.96 -51.93 -0.36 0.12 16 37 H 0.18 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.32 8.11 -51.93 -0.42 -0.10 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.11 0.37 7.81 -51.93 -0.41 -0.04 16 42 H 0.11 0.65 6.21 -51.93 -0.32 0.33 16 43 H 0.14 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.14 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.17 1.56 6.47 -51.93 -0.34 1.22 16 46 H 0.15 0.74 7.63 -51.93 -0.40 0.34 16 47 H 0.17 1.55 7.27 -52.49 -0.38 1.16 16 LS Contribution 376.76 15.07 5.68 5.68 Total: -1.00 -34.96 376.76 -9.48 -44.44 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.06 Total: -0.10 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -0.04 Total: -17.37 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.28 Total: -44.32 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -2.09 Total: -23.54 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 19.85 SS G_CDS: -0.65 Total: 19.19 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.96 -9.48 -44.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353417347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.338 kcal (2) G-P(sol) polarization free energy of solvation -34.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds