Wall clock time and date at job start Wed Apr 1 2020 00:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46839 * 2 1 4 4 C 1.50696 * 109.47046 * 239.99876 * 2 1 3 5 5 H 1.08000 * 120.00459 * 245.50134 * 4 2 1 6 6 C 1.37884 * 119.99947 * 65.50870 * 4 2 1 7 7 N 1.31512 * 119.99896 * 9.67206 * 6 4 2 8 8 Si 1.86797 * 119.99893 * 189.67804 * 6 4 2 9 9 H 1.48496 * 109.47320 * 84.99549 * 8 6 4 10 10 H 1.48508 * 109.46989 * 204.99187 * 8 6 4 11 11 H 1.48499 * 109.47267 * 324.98859 * 8 6 4 12 12 N 1.46901 * 109.47263 * 120.00135 * 2 1 3 13 13 C 1.46906 * 110.99959 * 58.94929 * 12 2 1 14 14 C 1.46903 * 110.99658 * 295.00369 * 12 2 1 15 15 C 1.50707 * 109.46559 * 189.99782 * 14 12 2 16 16 C 1.39871 * 126.03634 * 90.02979 * 15 14 12 17 17 N 1.30837 * 108.20131 * 179.97438 * 16 15 14 18 18 N 1.40084 * 108.20421 * 359.97438 * 17 16 15 19 19 C 1.46509 * 126.03770 * 180.02562 * 18 17 16 20 20 C 1.53001 * 108.89851 * 103.70608 * 19 18 17 21 21 C 1.52971 * 108.92810 * 222.26067 * 19 18 17 22 22 C 1.55093 * 108.66807 * 90.80833 * 21 19 18 23 23 S 1.83846 * 101.19179 * 41.86770 * 22 21 19 24 24 O 1.42092 * 109.61596 * 211.05518 * 23 22 21 25 25 O 1.42096 * 109.61222 * 77.09641 * 23 22 21 26 26 C 1.53617 * 108.92895 * 345.02308 * 19 18 17 27 27 C 1.34945 * 107.92802 * 359.75696 * 18 17 16 28 28 H 1.08998 * 109.47225 * 301.14490 * 1 2 3 29 29 H 1.08996 * 109.47128 * 61.15032 * 1 2 3 30 30 H 1.09007 * 109.47005 * 181.14784 * 1 2 3 31 31 H 0.96995 * 120.00113 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.46649 * 60.00518 * 13 12 2 33 33 H 1.08995 * 109.46964 * 179.97438 * 13 12 2 34 34 H 1.08993 * 109.47694 * 300.00588 * 13 12 2 35 35 H 1.09003 * 109.47019 * 309.99491 * 14 12 2 36 36 H 1.08995 * 109.47678 * 70.00021 * 14 12 2 37 37 H 1.07994 * 125.90295 * 359.94424 * 16 15 14 38 38 H 1.08995 * 109.47212 * 59.29662 * 20 19 18 39 39 H 1.08996 * 109.46959 * 179.30215 * 20 19 18 40 40 H 1.08996 * 109.46752 * 299.30191 * 20 19 18 41 41 H 1.09004 * 109.64918 * 210.64787 * 21 19 18 42 42 H 1.08999 * 109.65607 * 330.96194 * 21 19 18 43 43 H 1.09000 * 111.07903 * 283.89303 * 22 21 19 44 44 H 1.08997 * 111.08463 * 159.84890 * 22 21 19 45 45 H 1.08996 * 110.27252 * 0.59493 * 26 19 18 46 46 H 1.09000 * 110.26938 * 122.66140 * 26 19 18 47 47 H 1.08002 * 126.12985 * 180.24040 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5780 -1.6374 -1.1339 6 6 1.7954 -0.1768 -2.4796 7 7 1.3031 1.0373 -2.5934 8 14 2.1736 -1.1787 -4.0101 9 1 1.0192 -2.0586 -4.3235 10 1 2.4221 -0.2627 -5.1524 11 1 3.3801 -2.0109 -3.7715 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0762 1.2460 14 6 1.6487 0.0391 2.4180 15 6 2.3679 -0.5573 3.6005 16 6 3.6230 -0.1698 4.0813 17 7 3.9116 -0.9150 5.1173 18 7 2.8475 -1.8010 5.3291 19 6 2.7636 -2.8097 6.3884 20 6 1.8131 -2.3073 7.4770 21 6 2.1988 -4.1031 5.7984 22 6 3.3788 -4.9808 5.3059 23 16 4.5827 -4.7627 6.6781 24 8 5.9067 -4.8485 6.1692 25 8 4.1903 -5.5586 7.7879 26 6 4.1593 -3.0089 6.9985 27 6 1.9107 -1.5575 4.3889 28 1 -0.3633 0.5315 0.8795 29 1 -0.3633 0.4958 -0.9001 30 1 -0.3633 -1.0275 0.0206 31 1 1.1361 1.4126 -3.4721 32 1 1.8763 -2.6151 0.3647 33 1 1.9060 -2.5658 2.1435 34 1 0.4385 -2.0743 1.2639 35 1 1.9297 1.0870 2.3125 36 1 0.5722 -0.0346 2.5726 37 1 4.2463 0.6094 3.6684 38 1 0.8283 -2.1286 7.0453 39 1 1.7341 -3.0566 8.2645 40 1 2.1997 -1.3786 7.8965 41 1 1.6367 -4.6398 6.5627 42 1 1.5423 -3.8679 4.9607 43 1 3.7827 -4.6034 4.3664 44 1 3.0782 -6.0241 5.2102 45 1 4.8808 -2.3516 6.5134 46 1 4.1335 -2.8165 8.0711 47 1 0.9665 -2.0709 4.2827 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353417347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:49 Heat of formation + Delta-G solvation = 6.669703 kcal Electronic energy + Delta-G solvation = -28581.382017 eV Core-core repulsion = 24700.202844 eV Total energy + Delta-G solvation = -3881.179173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.39938 -39.09294 -38.43678 -38.03027 -37.15267 -34.77871 -32.68226 -31.96423 -31.46402 -29.95568 -28.91482 -27.83560 -27.07406 -25.31303 -24.92634 -23.27642 -21.49783 -20.67350 -20.45047 -19.91033 -18.45716 -18.11891 -17.62857 -17.01029 -16.84647 -16.78884 -16.27275 -15.81356 -15.44502 -15.31404 -15.28179 -14.85839 -14.77391 -14.42235 -14.29970 -13.97919 -13.76595 -13.50381 -13.35402 -13.30425 -13.21609 -13.09481 -12.92999 -12.83012 -12.71854 -12.58686 -12.56065 -12.48132 -12.44374 -12.20624 -11.96942 -11.81650 -11.58426 -11.35080 -11.30826 -10.91099 -10.41328 -10.25443 -9.31889 -8.66445 -8.09676 -6.15099 -1.03550 0.96419 1.36576 1.43653 1.44896 1.52261 1.54014 1.89805 2.45965 2.46734 2.84979 3.17145 3.21642 3.22448 3.43684 3.70811 3.72694 3.92956 3.96618 4.05255 4.30566 4.30850 4.45404 4.56154 4.58084 4.67711 4.71878 4.73704 4.78993 4.79622 4.86616 4.91404 4.92560 4.98479 5.07961 5.16693 5.17678 5.25831 5.33228 5.60095 5.73946 5.76805 5.80432 6.15594 6.24847 6.61267 6.79029 6.88135 6.99820 7.52694 8.99243 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017993 B = 0.002698 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.764147 B =10377.390451 C =11098.814738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.215 3.785 3 H 0.008 0.992 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.272 1.272 12 N -0.543 5.543 13 C 0.042 3.958 14 C 0.134 3.866 15 C -0.226 4.226 16 C 0.055 3.945 17 N -0.323 5.323 18 N -0.366 5.366 19 C 0.197 3.803 20 C -0.163 4.163 21 C -0.142 4.142 22 C -0.563 4.563 23 S 2.390 3.610 24 O -0.982 6.982 25 O -0.953 6.953 26 C -0.589 4.589 27 C 0.067 3.933 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.041 0.959 31 H 0.260 0.740 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.060 0.940 36 H 0.038 0.962 37 H 0.182 0.818 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.062 0.938 41 H 0.147 0.853 42 H 0.122 0.878 43 H 0.134 0.866 44 H 0.171 0.829 45 H 0.150 0.850 46 H 0.171 0.829 47 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 -10.554 22.611 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.108 3.892 3 H 0.026 0.974 4 C -0.552 4.552 5 H 0.074 0.926 6 C -0.184 4.184 7 N -0.562 5.562 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.266 5.266 13 C -0.107 4.107 14 C 0.005 3.995 15 C -0.238 4.238 16 C -0.130 4.130 17 N -0.144 5.144 18 N -0.149 5.149 19 C 0.113 3.887 20 C -0.221 4.221 21 C -0.181 4.181 22 C -0.695 4.695 23 S 2.577 3.423 24 O -0.979 6.979 25 O -0.950 6.950 26 C -0.719 4.719 27 C -0.079 4.079 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.199 0.801 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.165 0.835 42 H 0.141 0.859 43 H 0.152 0.848 44 H 0.189 0.811 45 H 0.168 0.832 46 H 0.189 0.811 47 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.540 -11.436 23.938 26.535 hybrid contribution -1.486 0.990 -2.364 2.963 sum -2.026 -10.446 21.574 24.055 Atomic orbital electron populations 1.22147 1.00369 0.99287 0.99327 1.19041 0.89776 0.93205 0.87223 0.97412 1.21397 1.34706 1.07950 0.91158 0.92629 1.25632 0.95615 0.95488 1.01705 1.70077 1.46689 1.15190 1.24209 0.85691 0.78631 0.78724 0.79311 1.19918 1.21350 1.19638 1.62212 1.60041 1.02730 1.01643 1.22175 0.97014 0.90340 1.01123 1.20199 0.95827 0.96613 0.86823 1.20003 0.98081 1.03966 1.01732 1.23916 0.96289 0.99315 0.93514 1.77093 1.10741 1.06188 1.20352 1.48915 1.13461 1.28411 1.24149 1.20979 0.94397 0.87264 0.86073 1.22487 0.98818 1.03418 0.97368 1.22848 0.98017 0.91817 1.05383 1.30505 1.12181 1.10797 1.16043 1.08967 0.76402 0.78723 0.78208 1.93576 1.37237 1.86337 1.80786 1.93600 1.84311 1.66374 1.50685 1.30746 1.04503 1.24000 1.12612 1.22466 0.96706 0.98313 0.90463 0.94739 0.94260 0.94036 0.93100 0.93491 0.91167 0.95949 0.92195 0.94434 0.80093 0.89789 0.87048 0.91858 0.83547 0.85936 0.84783 0.81077 0.83213 0.81109 0.78407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.85 8.36 71.98 0.60 -6.25 16 2 C 0.21 10.49 2.20 44.17 0.10 10.59 16 3 H 0.01 0.44 7.98 -2.39 -0.02 0.42 16 4 C -0.51 -27.74 7.97 25.60 0.20 -27.54 16 5 H 0.06 3.01 6.56 -2.91 -0.02 2.99 16 6 C 0.01 0.78 5.19 84.66 0.44 1.22 16 7 N -0.92 -53.02 12.17 21.45 0.26 -52.76 16 8 Si 0.95 43.42 29.55 68.60 2.03 45.44 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 N -0.54 -21.76 4.73 -906.01 -4.29 -26.05 16 13 C 0.04 1.44 8.67 127.69 1.11 2.55 16 14 C 0.13 4.40 4.89 85.56 0.42 4.81 16 15 C -0.23 -6.17 4.98 -20.14 -0.10 -6.27 16 16 C 0.06 1.54 11.96 85.24 1.02 2.56 16 17 N -0.32 -8.37 10.81 -57.03 -0.62 -8.99 16 18 N -0.37 -7.05 3.41 -306.92 -1.05 -8.10 16 19 C 0.20 2.33 1.10 3.80 0.00 2.33 16 20 C -0.16 -1.25 8.17 71.98 0.59 -0.66 16 21 C -0.14 -0.99 5.38 31.30 0.17 -0.82 16 22 C -0.56 -5.43 7.46 72.70 0.54 -4.88 16 23 S 2.39 36.52 6.05 -56.49 -0.34 36.18 16 24 O -0.98 -25.23 18.16 -127.52 -2.32 -27.55 16 25 O -0.95 -18.10 18.16 -127.52 -2.32 -20.42 16 26 C -0.59 -7.71 6.60 72.19 0.48 -7.23 16 27 C 0.07 1.36 8.72 83.54 0.73 2.09 16 28 H 0.03 1.36 6.81 -2.39 -0.02 1.34 16 29 H 0.04 1.99 6.89 -2.39 -0.02 1.97 16 30 H 0.04 1.76 6.32 -2.38 -0.02 1.74 16 31 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.05 1.83 6.43 -2.38 -0.02 1.82 16 33 H 0.07 1.98 6.11 -2.39 -0.01 1.97 16 34 H 0.02 0.73 6.26 -2.39 -0.01 0.72 16 35 H 0.06 2.10 8.00 -2.39 -0.02 2.08 16 36 H 0.04 1.16 6.96 -2.39 -0.02 1.14 16 37 H 0.18 4.83 8.06 -2.91 -0.02 4.81 16 38 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.11 0.28 8.11 -2.39 -0.02 0.26 16 40 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.15 0.09 7.81 -2.39 -0.02 0.07 16 42 H 0.12 0.72 6.21 -2.39 -0.01 0.71 16 43 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.17 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.15 2.70 6.47 -2.39 -0.02 2.68 16 46 H 0.17 1.32 7.63 -2.39 -0.02 1.31 16 47 H 0.20 2.65 7.27 -2.91 -0.02 2.63 16 Total: -1.00 -77.84 376.76 -1.37 -79.21 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.97 Total: 10.53 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 6.29 Total: -27.50 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -5.69 Total: -95.89 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -4.63 Total: -47.96 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 36.52 SS G_CDS: -0.34 Total: 36.18 kcal Total: -77.84 -1.37 -79.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353417347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.879 kcal (2) G-P(sol) polarization free energy of solvation -77.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds