Wall clock time and date at job start Wed Apr 1 2020 00:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46792 * 2 1 4 4 C 1.50703 * 109.46990 * 240.00536 * 2 1 3 5 5 H 1.08003 * 119.99728 * 239.99824 * 4 2 1 6 6 C 1.37870 * 119.99898 * 59.99974 * 4 2 1 7 7 N 1.31514 * 120.00480 * 359.97438 * 6 4 2 8 8 Si 1.86811 * 119.99802 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46923 * 59.99917 * 8 6 4 10 10 H 1.48495 * 109.46980 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47078 * 300.00312 * 8 6 4 12 12 N 1.46894 * 109.46882 * 120.00433 * 2 1 3 13 13 C 1.46902 * 110.99667 * 176.04413 * 12 2 1 14 14 C 1.46905 * 111.00204 * 299.99679 * 12 2 1 15 15 C 1.50700 * 109.47125 * 170.00217 * 14 12 2 16 16 C 1.39868 * 126.03608 * 270.00314 * 15 14 12 17 17 N 1.30847 * 108.19727 * 179.74113 * 16 15 14 18 18 N 1.40082 * 108.20412 * 0.39953 * 17 16 15 19 19 C 1.46500 * 126.03620 * 179.84880 * 18 17 16 20 20 C 1.52997 * 108.90298 * 223.99467 * 19 18 17 21 21 C 1.52980 * 108.92815 * 105.30799 * 19 18 17 22 22 C 1.54790 * 108.82610 * 209.42991 * 21 19 18 23 23 S 1.83845 * 101.16204 * 41.86944 * 22 21 19 24 24 O 1.42097 * 109.61121 * 211.07808 * 23 22 21 25 25 O 1.42104 * 109.77829 * 77.16200 * 23 22 21 26 26 C 1.53627 * 108.93213 * 342.68052 * 19 18 17 27 27 C 1.34947 * 107.92913 * 359.59398 * 18 17 16 28 28 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46981 * 299.99804 * 1 2 3 30 30 H 1.08997 * 109.46795 * 59.99567 * 1 2 3 31 31 H 0.97001 * 119.99822 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46827 * 183.95113 * 13 12 2 33 33 H 1.08997 * 109.47209 * 303.95077 * 13 12 2 34 34 H 1.08999 * 109.46977 * 63.95613 * 13 12 2 35 35 H 1.08998 * 109.46407 * 50.00281 * 14 12 2 36 36 H 1.08992 * 109.46798 * 290.00344 * 14 12 2 37 37 H 1.07999 * 125.90451 * 359.97438 * 16 15 14 38 38 H 1.09002 * 109.47153 * 60.70184 * 20 19 18 39 39 H 1.09001 * 109.46832 * 300.70375 * 20 19 18 40 40 H 1.09004 * 109.47261 * 180.70356 * 20 19 18 41 41 H 1.09000 * 109.65427 * 329.31270 * 21 19 18 42 42 H 1.09002 * 109.64924 * 89.63207 * 21 19 18 43 43 H 1.09002 * 111.06673 * 283.90699 * 22 21 19 44 44 H 1.08996 * 111.11084 * 159.84970 * 22 21 19 45 45 H 1.09000 * 110.26929 * 241.92897 * 26 19 18 46 46 H 1.08993 * 110.26765 * 3.90524 * 26 19 18 47 47 H 1.07999 * 126.13031 * 180.26090 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2391 -2.4827 7 7 0.9428 0.8299 -2.6033 8 14 2.3225 -1.1192 -4.0081 9 1 1.8281 -2.5195 -4.0084 10 1 1.8269 -0.4195 -5.2205 11 1 3.8075 -1.1187 -4.0078 12 7 2.0196 -0.6926 1.1994 13 6 3.4851 -0.7946 1.1869 14 6 1.5487 -0.0265 2.4211 15 6 1.8580 -0.8913 3.6158 16 6 1.0231 -1.8733 4.1591 17 7 1.6368 -2.4113 5.1818 18 7 2.8795 -1.7814 5.3274 19 6 3.8820 -2.0796 6.3532 20 6 4.4274 -0.7634 6.9108 21 6 5.0305 -2.8610 5.7122 22 6 5.6630 -3.7855 6.7805 23 16 4.1637 -4.4235 7.6318 24 8 4.4629 -4.6788 8.9973 25 8 3.5507 -5.4293 6.8369 26 6 3.2121 -2.8638 7.4918 27 6 2.9925 -0.8552 4.3525 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.7088 1.1615 -3.4844 32 1 3.8164 -1.3723 2.0499 33 1 3.8069 -1.2916 0.2718 34 1 3.9192 0.2042 1.2300 35 1 0.4723 0.1322 2.3563 36 1 2.0519 0.9344 2.5280 37 1 0.0430 -2.1436 3.7948 38 1 3.6136 -0.1943 7.3602 39 1 4.8733 -0.1835 6.1027 40 1 5.1838 -0.9747 7.6667 41 1 4.6491 -3.4627 4.8873 42 1 5.7832 -2.1663 5.3394 43 1 6.2920 -3.2183 7.4666 44 1 6.2245 -4.5958 6.3156 45 1 3.2705 -2.3009 8.4233 46 1 2.1721 -3.0754 7.2436 47 1 3.8371 -0.2022 4.1893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353417348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:52 Heat of formation + Delta-G solvation = 34.751144 kcal Electronic energy + Delta-G solvation = -28391.815758 eV Core-core repulsion = 24511.854288 eV Total energy + Delta-G solvation = -3879.961470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41995 -38.17254 -37.39366 -36.77076 -36.37241 -32.98089 -32.05251 -30.68078 -30.21252 -28.92104 -28.28342 -26.62387 -25.12002 -24.52420 -23.06211 -22.20730 -20.17031 -19.77146 -19.31891 -19.12820 -17.64241 -16.90078 -16.58365 -16.22558 -16.02148 -15.23871 -15.00612 -14.74402 -14.69100 -14.10636 -14.03986 -13.78106 -13.59700 -13.50152 -13.13926 -12.87640 -12.78559 -12.54008 -12.50482 -12.41155 -12.39627 -12.21212 -12.00925 -11.77318 -11.68965 -11.17451 -11.05515 -10.97425 -10.75128 -10.71401 -10.52820 -10.38493 -10.11628 -10.00259 -9.82253 -9.30441 -8.87042 -8.44742 -8.19411 -7.10262 -5.99858 -4.04174 -0.42301 1.89798 2.01433 2.30960 3.02083 3.08796 3.32535 3.37057 3.40347 3.55561 3.64927 3.84331 3.99504 4.17753 4.32499 4.42602 4.73938 4.86263 4.91257 4.93363 5.01530 5.04307 5.12014 5.26264 5.28170 5.35753 5.47657 5.51715 5.60279 5.77513 6.07034 6.17358 6.32155 6.33742 6.50458 6.78759 6.81017 6.88167 7.06157 7.08353 7.18373 7.54940 7.75786 7.81676 7.84724 8.24731 8.35714 8.63928 9.02459 9.60819 11.06759 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.002468 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.498229 B =11342.375842 C =11745.712297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.213 3.787 3 H -0.003 1.003 4 C -0.503 4.503 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.279 1.279 12 N -0.532 5.532 13 C 0.039 3.961 14 C 0.122 3.878 15 C -0.199 4.199 16 C 0.074 3.926 17 N -0.305 5.305 18 N -0.378 5.378 19 C 0.210 3.790 20 C -0.164 4.164 21 C -0.139 4.139 22 C -0.576 4.576 23 S 2.385 3.615 24 O -0.936 6.936 25 O -0.917 6.917 26 C -0.596 4.596 27 C 0.052 3.948 28 H 0.035 0.965 29 H 0.009 0.991 30 H 0.084 0.916 31 H 0.260 0.740 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.006 0.994 35 H 0.082 0.918 36 H 0.024 0.976 37 H 0.184 0.816 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.166 0.834 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.113 -2.860 21.741 23.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.014 0.986 4 C -0.541 4.541 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.256 5.256 13 C -0.109 4.109 14 C -0.007 4.007 15 C -0.211 4.211 16 C -0.113 4.113 17 N -0.125 5.125 18 N -0.162 5.162 19 C 0.124 3.876 20 C -0.222 4.222 21 C -0.179 4.179 22 C -0.706 4.706 23 S 2.567 3.433 24 O -0.933 6.933 25 O -0.914 6.914 26 C -0.725 4.725 27 C -0.093 4.093 28 H 0.054 0.946 29 H 0.028 0.972 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.025 0.975 35 H 0.101 0.899 36 H 0.042 0.958 37 H 0.201 0.799 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.127 0.873 43 H 0.159 0.841 44 H 0.162 0.838 45 H 0.165 0.835 46 H 0.184 0.816 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.624 -5.000 23.017 25.082 hybrid contribution 0.915 1.859 -2.001 2.880 sum 9.539 -3.141 21.016 23.292 Atomic orbital electron populations 1.21859 0.97737 0.99712 0.99850 1.19232 0.92332 0.91873 0.85876 0.98575 1.21128 1.30981 1.12218 0.89796 0.91964 1.24920 0.95238 0.95082 0.98965 1.69881 1.36932 1.23060 1.23466 0.86604 0.79019 0.79839 0.82187 1.20209 1.21398 1.20422 1.62110 1.09094 1.52694 1.01737 1.22195 0.89121 0.98296 1.01318 1.20427 1.00972 0.92175 0.87165 1.20225 0.95117 1.04209 1.01517 1.23809 1.00176 0.94422 0.92876 1.77129 0.92785 1.20756 1.21868 1.48505 1.13964 1.29569 1.24143 1.20409 0.85311 0.97169 0.84662 1.22448 1.02335 0.95006 1.02414 1.22566 0.97055 0.99672 0.98585 1.30510 1.18286 1.10739 1.11043 1.09330 0.79698 0.78259 0.75996 1.93620 1.83423 1.84131 1.32146 1.93685 1.73879 1.53136 1.70695 1.30778 1.16335 1.20044 1.05329 1.22160 1.00240 0.95609 0.91244 0.94606 0.97202 0.89742 0.92971 0.94025 0.90740 0.97546 0.89934 0.95778 0.79930 0.90588 0.90558 0.89753 0.88019 0.87261 0.84088 0.83829 0.83490 0.81607 0.81658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.76 37.16 0.33 -2.85 16 2 C 0.21 5.24 2.06 -68.86 -0.14 5.10 16 3 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 4 C -0.50 -13.55 7.88 -34.44 -0.27 -13.83 16 5 H 0.06 1.68 6.41 -52.48 -0.34 1.34 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.19 11.32 55.43 0.63 -24.56 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.53 -11.08 4.61 -237.73 -1.10 -12.18 16 13 C 0.04 0.75 9.00 60.07 0.54 1.29 16 14 C 0.12 2.11 5.26 -4.97 -0.03 2.09 16 15 C -0.20 -2.98 4.99 -105.05 -0.52 -3.50 16 16 C 0.07 1.09 11.96 -17.36 -0.21 0.88 16 17 N -0.31 -4.34 10.84 30.63 0.33 -4.01 16 18 N -0.38 -4.38 3.33 -48.36 -0.16 -4.54 16 19 C 0.21 1.63 1.09 -131.50 -0.14 1.49 16 20 C -0.16 -0.85 7.73 37.16 0.29 -0.56 16 21 C -0.14 -0.91 5.38 -25.80 -0.14 -1.05 16 22 C -0.58 -2.69 7.45 38.10 0.28 -2.41 16 23 S 2.39 19.31 6.04 -107.50 -0.65 18.66 16 24 O -0.94 -9.96 18.16 -57.69 -1.05 -11.01 16 25 O -0.92 -11.67 18.16 -57.69 -1.05 -12.72 16 26 C -0.60 -4.38 6.61 37.48 0.25 -4.13 16 27 C 0.05 0.64 9.06 -17.22 -0.16 0.49 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.01 0.19 6.20 -51.93 -0.32 -0.13 16 30 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.04 0.69 6.32 -51.93 -0.33 0.36 16 33 H 0.07 1.55 6.10 -51.93 -0.32 1.23 16 34 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 35 H 0.08 1.45 5.83 -51.93 -0.30 1.15 16 36 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 37 H 0.18 2.43 8.06 -52.49 -0.42 2.00 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.36 7.20 -51.93 -0.37 -0.01 16 40 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.10 0.89 8.03 -51.93 -0.42 0.47 16 42 H 0.11 0.51 7.77 -51.93 -0.40 0.11 16 43 H 0.14 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.14 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.15 0.66 7.63 -51.93 -0.40 0.26 16 46 H 0.17 1.56 6.48 -51.93 -0.34 1.22 16 47 H 0.17 1.65 7.47 -52.49 -0.39 1.26 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -35.83 378.86 -9.55 -45.38 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -7.18 Total: -1.37 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.02 Total: -15.49 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.30 Total: -45.29 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -2.10 Total: -23.73 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 19.31 SS G_CDS: -0.65 Total: 18.66 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.83 -9.55 -45.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353417348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.134 kcal (2) G-P(sol) polarization free energy of solvation -35.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds