Wall clock time and date at job start Wed Apr 1 2020 00:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46792 * 2 1 4 4 C 1.50703 * 109.46990 * 240.00536 * 2 1 3 5 5 H 1.08003 * 119.99728 * 239.99824 * 4 2 1 6 6 C 1.37870 * 119.99898 * 59.99974 * 4 2 1 7 7 N 1.31514 * 120.00480 * 359.97438 * 6 4 2 8 8 Si 1.86811 * 119.99802 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46923 * 59.99917 * 8 6 4 10 10 H 1.48495 * 109.46980 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47078 * 300.00312 * 8 6 4 12 12 N 1.46894 * 109.46882 * 120.00433 * 2 1 3 13 13 C 1.46902 * 110.99667 * 176.04413 * 12 2 1 14 14 C 1.46905 * 111.00204 * 299.99679 * 12 2 1 15 15 C 1.50700 * 109.47125 * 170.00217 * 14 12 2 16 16 C 1.39868 * 126.03608 * 270.00314 * 15 14 12 17 17 N 1.30847 * 108.19727 * 179.74113 * 16 15 14 18 18 N 1.40082 * 108.20412 * 0.39953 * 17 16 15 19 19 C 1.46500 * 126.03620 * 179.84880 * 18 17 16 20 20 C 1.52997 * 108.90298 * 223.99467 * 19 18 17 21 21 C 1.52980 * 108.92815 * 105.30799 * 19 18 17 22 22 C 1.54790 * 108.82610 * 209.42991 * 21 19 18 23 23 S 1.83845 * 101.16204 * 41.86944 * 22 21 19 24 24 O 1.42097 * 109.61121 * 211.07808 * 23 22 21 25 25 O 1.42104 * 109.77829 * 77.16200 * 23 22 21 26 26 C 1.53627 * 108.93213 * 342.68052 * 19 18 17 27 27 C 1.34947 * 107.92913 * 359.59398 * 18 17 16 28 28 H 1.08999 * 109.47092 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46981 * 299.99804 * 1 2 3 30 30 H 1.08997 * 109.46795 * 59.99567 * 1 2 3 31 31 H 0.97001 * 119.99822 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46827 * 183.95113 * 13 12 2 33 33 H 1.08997 * 109.47209 * 303.95077 * 13 12 2 34 34 H 1.08999 * 109.46977 * 63.95613 * 13 12 2 35 35 H 1.08998 * 109.46407 * 50.00281 * 14 12 2 36 36 H 1.08992 * 109.46798 * 290.00344 * 14 12 2 37 37 H 1.07999 * 125.90451 * 359.97438 * 16 15 14 38 38 H 1.09002 * 109.47153 * 60.70184 * 20 19 18 39 39 H 1.09001 * 109.46832 * 300.70375 * 20 19 18 40 40 H 1.09004 * 109.47261 * 180.70356 * 20 19 18 41 41 H 1.09000 * 109.65427 * 329.31270 * 21 19 18 42 42 H 1.09002 * 109.64924 * 89.63207 * 21 19 18 43 43 H 1.09002 * 111.06673 * 283.90699 * 22 21 19 44 44 H 1.08996 * 111.11084 * 159.84970 * 22 21 19 45 45 H 1.09000 * 110.26929 * 241.92897 * 26 19 18 46 46 H 1.08993 * 110.26765 * 3.90524 * 26 19 18 47 47 H 1.07999 * 126.13031 * 180.26090 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2391 -2.4827 7 7 0.9428 0.8299 -2.6033 8 14 2.3225 -1.1192 -4.0081 9 1 1.8281 -2.5195 -4.0084 10 1 1.8269 -0.4195 -5.2205 11 1 3.8075 -1.1187 -4.0078 12 7 2.0196 -0.6926 1.1994 13 6 3.4851 -0.7946 1.1869 14 6 1.5487 -0.0265 2.4211 15 6 1.8580 -0.8913 3.6158 16 6 1.0231 -1.8733 4.1591 17 7 1.6368 -2.4113 5.1818 18 7 2.8795 -1.7814 5.3274 19 6 3.8820 -2.0796 6.3532 20 6 4.4274 -0.7634 6.9108 21 6 5.0305 -2.8610 5.7122 22 6 5.6630 -3.7855 6.7805 23 16 4.1637 -4.4235 7.6318 24 8 4.4629 -4.6788 8.9973 25 8 3.5507 -5.4293 6.8369 26 6 3.2121 -2.8638 7.4918 27 6 2.9925 -0.8552 4.3525 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.7088 1.1615 -3.4844 32 1 3.8164 -1.3723 2.0499 33 1 3.8069 -1.2916 0.2718 34 1 3.9192 0.2042 1.2300 35 1 0.4723 0.1322 2.3563 36 1 2.0519 0.9344 2.5280 37 1 0.0430 -2.1436 3.7948 38 1 3.6136 -0.1943 7.3602 39 1 4.8733 -0.1835 6.1027 40 1 5.1838 -0.9747 7.6667 41 1 4.6491 -3.4627 4.8873 42 1 5.7832 -2.1663 5.3394 43 1 6.2920 -3.2183 7.4666 44 1 6.2245 -4.5958 6.3156 45 1 3.2705 -2.3009 8.4233 46 1 2.1721 -3.0754 7.2436 47 1 3.8371 -0.2022 4.1893 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353417348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:51 Heat of formation + Delta-G solvation = 7.585095 kcal Electronic energy + Delta-G solvation = -28392.993767 eV Core-core repulsion = 24511.854288 eV Total energy + Delta-G solvation = -3881.139479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.38179 -39.02850 -38.30732 -38.07712 -37.12107 -34.86621 -32.81320 -32.00272 -31.06132 -30.57004 -28.85495 -28.08513 -26.48354 -25.59738 -24.57391 -23.11437 -21.61020 -20.77098 -20.43521 -19.90007 -18.47294 -18.21940 -17.49552 -17.27666 -16.95319 -16.71572 -16.04597 -15.85708 -15.52613 -15.39858 -15.30070 -15.14351 -14.46334 -14.31093 -14.12154 -13.89139 -13.74343 -13.49636 -13.44121 -13.36693 -13.22636 -13.16363 -12.97414 -12.90308 -12.83056 -12.65826 -12.58668 -12.29560 -12.18432 -12.03012 -11.87305 -11.81637 -11.61411 -11.41781 -11.26896 -10.81637 -10.47859 -10.28996 -9.33071 -8.76058 -8.07001 -6.18338 -1.02113 0.94979 1.35677 1.43841 1.46039 1.53034 1.57219 1.88611 2.45664 2.49647 2.95542 3.07357 3.21096 3.30617 3.49615 3.62545 3.67497 3.93217 3.95971 4.05129 4.29146 4.32579 4.50420 4.54351 4.60479 4.66344 4.69281 4.76922 4.79931 4.81254 4.83944 4.92794 5.03847 5.05268 5.11569 5.14724 5.19795 5.31135 5.35648 5.57626 5.72632 5.78175 5.87188 6.15492 6.32995 6.50461 6.77670 6.85785 6.98017 7.50822 8.98216 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.002468 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.498229 B =11342.375842 C =11745.712297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.218 3.782 3 H -0.035 1.035 4 C -0.517 4.517 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.956 3.044 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.542 5.542 13 C 0.046 3.954 14 C 0.130 3.870 15 C -0.228 4.228 16 C 0.057 3.943 17 N -0.326 5.326 18 N -0.367 5.367 19 C 0.196 3.804 20 C -0.165 4.165 21 C -0.143 4.143 22 C -0.540 4.540 23 S 2.378 3.622 24 O -0.968 6.968 25 O -0.977 6.977 26 C -0.592 4.592 27 C 0.071 3.929 28 H 0.028 0.972 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.261 0.739 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.011 0.989 35 H 0.073 0.927 36 H 0.028 0.972 37 H 0.184 0.816 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.076 0.924 42 H 0.142 0.858 43 H 0.184 0.816 44 H 0.161 0.839 45 H 0.177 0.823 46 H 0.142 0.858 47 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.109 -2.261 23.128 26.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 H -0.018 1.018 4 C -0.556 4.556 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.267 5.267 13 C -0.103 4.103 14 C 0.002 3.998 15 C -0.239 4.239 16 C -0.129 4.129 17 N -0.147 5.147 18 N -0.150 5.150 19 C 0.112 3.888 20 C -0.223 4.223 21 C -0.183 4.183 22 C -0.673 4.673 23 S 2.566 3.434 24 O -0.965 6.965 25 O -0.974 6.974 26 C -0.721 4.721 27 C -0.076 4.076 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.029 0.971 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.200 0.800 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.139 0.861 41 H 0.095 0.905 42 H 0.160 0.840 43 H 0.202 0.798 44 H 0.179 0.821 45 H 0.195 0.805 46 H 0.161 0.839 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 11.597 -4.449 24.460 27.433 hybrid contribution 0.060 1.706 -2.325 2.885 sum 11.657 -2.743 22.135 25.167 Atomic orbital electron populations 1.21676 0.97478 0.99114 0.99747 1.19009 0.92528 0.90175 0.87186 1.01780 1.21425 1.30940 1.12146 0.91078 0.92474 1.25666 0.95462 0.95769 1.01747 1.70009 1.37817 1.24213 1.23984 0.85649 0.78789 0.78618 0.78783 1.20048 1.21053 1.19568 1.62043 1.10295 1.52622 1.01709 1.22132 0.88034 0.98700 1.01390 1.20293 1.00297 0.92658 0.86582 1.20005 0.96806 1.05252 1.01854 1.23915 1.00687 0.94875 0.93404 1.77123 0.94257 1.21458 1.21894 1.48862 1.13561 1.28311 1.24289 1.20975 0.84742 0.99244 0.83793 1.22563 1.03013 0.93045 1.03660 1.22646 0.97257 1.00151 0.98224 1.30382 1.15644 1.10966 1.10294 1.09253 0.80935 0.78091 0.75146 1.93572 1.84085 1.84895 1.33962 1.93609 1.76115 1.56198 1.71515 1.30718 1.14794 1.19738 1.06859 1.22500 0.99921 0.95026 0.90121 0.95269 0.94770 0.92343 0.93018 0.91206 0.93011 0.97080 0.90876 0.95352 0.79953 0.91246 0.89414 0.86107 0.90519 0.83999 0.79828 0.82116 0.80489 0.83943 0.78570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.76 71.98 0.63 -5.31 16 2 C 0.22 10.94 2.06 44.17 0.09 11.04 16 3 H -0.04 -1.96 8.14 -2.39 -0.02 -1.98 16 4 C -0.52 -28.31 7.88 25.60 0.20 -28.11 16 5 H 0.06 3.12 6.41 -2.91 -0.02 3.10 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -52.76 11.32 21.44 0.24 -52.52 16 8 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 N -0.54 -22.58 4.61 -906.03 -4.18 -26.76 16 13 C 0.05 1.70 9.00 127.69 1.15 2.85 16 14 C 0.13 4.47 5.26 85.56 0.45 4.92 16 15 C -0.23 -6.57 4.99 -20.14 -0.10 -6.67 16 16 C 0.06 1.68 11.96 85.23 1.02 2.70 16 17 N -0.33 -9.21 10.84 -57.02 -0.62 -9.83 16 18 N -0.37 -7.72 3.33 -306.91 -1.02 -8.74 16 19 C 0.20 2.39 1.09 3.81 0.00 2.39 16 20 C -0.16 -0.87 7.73 71.98 0.56 -0.31 16 21 C -0.14 -1.28 5.38 31.20 0.17 -1.12 16 22 C -0.54 -2.69 7.45 72.59 0.54 -2.15 16 23 S 2.38 35.91 6.04 -56.49 -0.34 35.57 16 24 O -0.97 -19.70 18.16 -127.50 -2.32 -22.02 16 25 O -0.98 -25.81 18.16 -127.50 -2.32 -28.13 16 26 C -0.59 -7.63 6.61 72.19 0.48 -7.15 16 27 C 0.07 1.56 9.06 83.54 0.76 2.32 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.03 1.44 6.20 -2.39 -0.01 1.43 16 30 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 31 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.07 2.15 6.32 -2.38 -0.02 2.14 16 33 H 0.05 2.14 6.10 -2.39 -0.01 2.12 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.07 2.59 5.83 -2.39 -0.01 2.58 16 36 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 37 H 0.18 5.08 8.06 -2.91 -0.02 5.06 16 38 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.09 0.32 7.20 -2.39 -0.02 0.30 16 40 H 0.12 -0.20 8.14 -2.38 -0.02 -0.22 16 41 H 0.08 1.15 8.03 -2.39 -0.02 1.13 16 42 H 0.14 0.45 7.77 -2.39 -0.02 0.43 16 43 H 0.18 -0.52 8.14 -2.39 -0.02 -0.54 16 44 H 0.16 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.18 1.08 7.63 -2.39 -0.02 1.06 16 46 H 0.14 2.68 6.48 -2.39 -0.02 2.67 16 47 H 0.20 3.02 7.47 -2.91 -0.02 3.00 16 Total: -1.00 -81.57 378.86 -1.16 -82.73 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 0.97 Total: 7.57 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 6.39 Total: -23.50 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -5.58 Total: -97.85 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -4.63 Total: -50.14 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 35.91 SS G_CDS: -0.34 Total: 35.57 kcal Total: -81.57 -1.16 -82.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353417348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.310 kcal (2) G-P(sol) polarization free energy of solvation -81.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds