Wall clock time and date at job start Wed Apr 1 2020 00:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47217 * 2 1 4 4 C 1.50694 * 109.47174 * 240.00361 * 2 1 3 5 5 H 1.08003 * 120.00431 * 239.99960 * 4 2 1 6 6 C 1.37880 * 120.00213 * 59.99748 * 4 2 1 7 7 N 1.31511 * 119.99845 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00054 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47003 * 60.00303 * 8 6 4 10 10 H 1.48503 * 109.46863 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47436 * 300.00009 * 8 6 4 12 12 N 1.46500 * 109.47386 * 119.99963 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00170 * 12 2 1 14 14 O 1.21279 * 119.99633 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00115 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47212 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47482 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 17 16 20 20 H 1.08996 * 110.70664 * 56.87401 * 19 18 17 21 21 S 1.84562 * 110.79177 * 293.54208 * 19 18 17 22 22 C 1.84856 * 96.96900 * 248.33186 * 21 19 18 23 23 C 1.52262 * 100.35633 * 24.35498 * 22 21 19 24 24 H 1.09000 * 110.06852 * 70.46852 * 23 22 21 25 25 N 1.44537 * 122.62601 * 201.84413 * 23 22 21 26 26 C 1.36676 * 105.45231 * 146.34271 * 25 23 22 27 27 O 1.21580 * 123.68668 * 165.60357 * 26 25 23 28 28 N 1.36864 * 112.63392 * 345.60761 * 26 25 23 29 29 C 1.43237 * 104.99025 * 346.45368 * 28 26 25 30 30 H 1.09005 * 106.50952 * 282.85763 * 29 28 26 31 31 H 1.09005 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46914 * 299.99464 * 1 2 3 33 33 H 1.08992 * 109.47631 * 59.99878 * 1 2 3 34 34 H 0.96997 * 119.99921 * 180.02562 * 7 6 4 35 35 H 0.97004 * 119.99396 * 94.99944 * 12 2 1 36 36 H 1.09002 * 109.47060 * 60.00000 * 15 13 12 37 37 H 1.09001 * 109.46927 * 300.00196 * 15 13 12 38 38 H 1.09002 * 109.47153 * 60.00002 * 16 15 13 39 39 H 1.09001 * 109.46832 * 300.00193 * 16 15 13 40 40 H 1.09002 * 109.47103 * 59.99753 * 17 16 15 41 41 H 1.08998 * 109.46862 * 300.00565 * 17 16 15 42 42 H 1.09002 * 109.47153 * 59.99783 * 18 17 16 43 43 H 1.09001 * 109.46832 * 299.99974 * 18 17 16 44 44 H 1.08997 * 111.23510 * 142.13504 * 22 21 19 45 45 H 1.09001 * 111.23571 * 266.57591 * 22 21 19 46 46 H 0.96999 * 127.27075 * 326.35025 * 25 23 22 47 47 H 0.96996 * 127.50537 * 166.45912 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8257 -2.5200 -4.0078 10 1 1.8258 -0.4203 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3572 14 8 1.8581 1.1583 2.4117 15 6 2.6489 -0.7289 3.5877 16 6 2.6999 0.2540 4.7591 17 6 3.2100 -0.4672 6.0082 18 6 3.2616 0.5159 7.1795 19 6 3.7724 -0.2053 8.4285 20 1 4.7486 -0.6530 8.2428 21 16 2.5623 -1.4811 8.9891 22 6 2.0577 -0.6387 10.5553 23 6 2.3881 0.8064 10.2075 24 1 1.6870 1.1813 9.4619 25 7 2.6170 1.8175 11.2147 26 6 3.5578 2.6544 10.6833 27 8 3.8142 3.7539 11.1344 28 7 4.1798 2.1197 9.5877 29 6 3.8253 0.7319 9.6009 30 1 4.4457 0.2610 10.3635 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 0.7088 1.1615 -3.4843 35 1 2.2490 -1.6318 1.1525 36 1 3.6481 -1.1214 3.3985 37 1 1.9760 -1.5507 3.8325 38 1 1.7006 0.6461 4.9481 39 1 3.3726 1.0761 4.5145 40 1 4.2094 -0.8590 5.8189 41 1 2.5378 -1.2895 6.2529 42 1 2.2624 0.9081 7.3689 43 1 3.9342 1.3379 6.9344 44 1 0.9920 -0.7652 10.7459 45 1 2.6517 -0.9872 11.4002 46 1 2.1926 1.8872 12.0841 47 1 4.7390 2.5802 8.9427 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356437291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:22 Heat of formation + Delta-G solvation = -58.679893 kcal Electronic energy + Delta-G solvation = -26693.798658 eV Core-core repulsion = 22809.785714 eV Total energy + Delta-G solvation = -3884.012944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.08582 -38.93082 -37.94279 -36.10361 -34.77666 -33.85742 -33.18245 -32.34635 -31.12879 -29.16894 -27.80899 -25.26370 -24.84451 -23.39893 -22.38471 -21.68072 -21.15916 -20.56086 -19.30827 -18.23039 -17.74888 -17.17205 -17.01290 -16.33561 -15.88146 -15.71422 -15.51934 -15.19867 -15.01130 -14.70493 -14.47040 -14.36740 -14.03317 -13.39523 -13.20214 -13.04215 -12.78327 -12.49647 -12.36878 -12.14336 -11.99027 -11.66735 -11.38745 -11.23059 -11.13755 -10.99424 -10.94661 -10.93711 -10.74936 -10.65509 -10.45679 -10.31485 -10.22523 -9.94553 -9.35951 -9.04748 -8.94287 -8.53707 -8.29468 -7.87086 -6.11519 -4.20896 0.97362 1.43067 2.30851 2.35948 3.12024 3.25404 3.30686 3.31765 3.46816 3.51007 3.85154 4.01033 4.16590 4.25305 4.31730 4.42412 4.63790 4.76165 4.85060 4.92511 4.99403 5.03673 5.15343 5.20288 5.28092 5.36450 5.48865 5.55843 5.76431 5.79531 5.92524 5.98565 6.29478 6.43022 6.44016 6.59828 6.74872 6.84103 6.98303 7.17158 7.49674 7.58470 7.71135 7.93336 7.99041 8.16686 8.70912 8.79919 9.18425 9.46979 10.94388 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.001708 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.836253 B =16385.532342 C =16889.124585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.712 5.712 13 C 0.498 3.502 14 O -0.559 6.559 15 C -0.142 4.142 16 C -0.100 4.100 17 C -0.120 4.120 18 C -0.106 4.106 19 C -0.033 4.033 20 H 0.120 0.880 21 S -0.235 6.235 22 C -0.076 4.076 23 C 0.099 3.901 24 H 0.098 0.902 25 N -0.733 5.733 26 C 0.712 3.288 27 O -0.557 6.557 28 N -0.723 5.723 29 C 0.104 3.896 30 H 0.073 0.927 31 H 0.025 0.975 32 H 0.014 0.986 33 H 0.089 0.911 34 H 0.265 0.735 35 H 0.388 0.612 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.117 0.883 45 H 0.102 0.898 46 H 0.431 0.569 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.744 -6.005 28.188 29.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.360 5.360 13 C 0.283 3.717 14 O -0.438 6.438 15 C -0.182 4.182 16 C -0.138 4.138 17 C -0.158 4.158 18 C -0.145 4.145 19 C -0.162 4.162 20 H 0.138 0.862 21 S -0.008 6.008 22 C -0.225 4.225 23 C -0.010 4.010 24 H 0.115 0.885 25 N -0.399 5.399 26 C 0.412 3.588 27 O -0.430 6.430 28 N -0.389 5.389 29 C -0.005 4.005 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.220 0.780 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.135 0.865 45 H 0.121 0.879 46 H 0.275 0.725 47 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 4.239 -5.484 27.812 28.663 hybrid contribution 0.775 0.091 -0.395 0.875 sum 5.014 -5.393 27.417 28.388 Atomic orbital electron populations 1.22069 0.98563 0.99033 1.00835 1.18709 0.90981 0.93955 0.80196 0.93511 1.21191 1.32453 1.13190 0.90400 0.92174 1.24903 0.94850 0.94975 0.99076 1.69893 1.35834 1.22421 1.23959 0.86503 0.79140 0.79579 0.81826 1.20178 1.21139 1.20197 1.46554 1.65164 1.13514 1.10735 1.20536 0.78632 0.87595 0.84943 1.90643 1.51528 1.16324 1.85335 1.21683 1.02591 0.99679 0.94260 1.21262 1.02584 0.97702 0.92233 1.21651 1.01778 0.98317 0.94030 1.21708 1.02246 0.98229 0.92301 1.23208 1.01153 0.95231 0.96601 0.86222 1.88478 1.54262 1.32527 1.25549 1.23874 1.06278 0.93931 0.98432 1.22545 0.97595 0.89776 0.91110 0.88477 1.45135 1.44956 1.29496 1.20332 1.17220 0.78712 0.83118 0.79739 1.90995 1.68283 1.19367 1.64325 1.44799 1.55081 1.08446 1.30570 1.21496 0.96060 0.85195 0.97783 0.90911 0.95536 0.96699 0.89227 0.92535 0.77994 0.89684 0.89632 0.91230 0.91355 0.91899 0.91014 0.90598 0.90581 0.86510 0.87918 0.72537 0.72290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.15 0.34 -3.33 16 2 C 0.26 6.75 2.56 -69.09 -0.18 6.57 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.18 8.73 -34.44 -0.30 -14.49 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -25.01 11.32 55.43 0.63 -24.39 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.71 -14.72 5.07 -54.94 -0.28 -15.00 16 13 C 0.50 9.65 7.79 -10.98 -0.09 9.57 16 14 O -0.56 -13.19 15.65 5.56 0.09 -13.10 16 15 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 16 C -0.10 -1.17 4.50 -26.74 -0.12 -1.29 16 17 C -0.12 -0.97 5.07 -26.74 -0.14 -1.11 16 18 C -0.11 -0.70 4.64 -26.73 -0.12 -0.82 16 19 C -0.03 -0.17 3.23 -28.13 -0.09 -0.26 16 20 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 21 S -0.23 -1.43 21.81 -107.50 -2.34 -3.78 16 22 C -0.08 -0.28 7.24 36.78 0.27 -0.01 16 23 C 0.10 0.48 3.53 -67.65 -0.24 0.25 16 24 H 0.10 0.57 7.37 -51.93 -0.38 0.19 16 25 N -0.73 -4.29 6.55 -57.50 -0.38 -4.66 16 26 C 0.71 6.50 8.80 -83.28 -0.73 5.77 16 27 O -0.56 -7.54 18.05 5.30 0.10 -7.44 16 28 N -0.72 -4.76 6.43 -59.29 -0.38 -5.14 16 29 C 0.10 0.54 2.71 -69.35 -0.19 0.35 16 30 H 0.07 0.38 7.99 -51.93 -0.42 -0.04 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.39 6.87 8.54 -40.82 -0.35 6.52 16 36 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.60 7.31 -51.93 -0.38 0.22 16 42 H 0.08 0.56 7.36 -51.93 -0.38 0.18 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.43 1.73 8.96 -40.82 -0.37 1.37 16 47 H 0.43 2.39 8.96 -40.82 -0.37 2.03 16 LS Contribution 390.49 15.07 5.88 5.88 Total: -1.00 -34.27 390.49 -11.08 -45.35 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.54 Total: 5.82 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.84 Total: 0.85 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.41 Total: -49.18 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: 0.18 Total: -20.54 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.34 Total: -3.78 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.27 -11.08 -45.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356437291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.332 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds