Wall clock time and date at job start Wed Apr 1 2020 00:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47217 * 2 1 4 4 C 1.50694 * 109.47174 * 240.00361 * 2 1 3 5 5 H 1.08003 * 120.00431 * 239.99960 * 4 2 1 6 6 C 1.37880 * 120.00213 * 59.99748 * 4 2 1 7 7 N 1.31511 * 119.99845 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00054 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47003 * 60.00303 * 8 6 4 10 10 H 1.48503 * 109.46863 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47436 * 300.00009 * 8 6 4 12 12 N 1.46500 * 109.47386 * 119.99963 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00170 * 12 2 1 14 14 O 1.21279 * 119.99633 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00115 * 179.97438 * 13 12 2 16 16 C 1.52997 * 109.47212 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47482 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47482 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 17 16 20 20 H 1.08996 * 110.70664 * 56.87401 * 19 18 17 21 21 S 1.84562 * 110.79177 * 293.54208 * 19 18 17 22 22 C 1.84856 * 96.96900 * 248.33186 * 21 19 18 23 23 C 1.52262 * 100.35633 * 24.35498 * 22 21 19 24 24 H 1.09000 * 110.06852 * 70.46852 * 23 22 21 25 25 N 1.44537 * 122.62601 * 201.84413 * 23 22 21 26 26 C 1.36676 * 105.45231 * 146.34271 * 25 23 22 27 27 O 1.21580 * 123.68668 * 165.60357 * 26 25 23 28 28 N 1.36864 * 112.63392 * 345.60761 * 26 25 23 29 29 C 1.43237 * 104.99025 * 346.45368 * 28 26 25 30 30 H 1.09005 * 106.50952 * 282.85763 * 29 28 26 31 31 H 1.09005 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46914 * 299.99464 * 1 2 3 33 33 H 1.08992 * 109.47631 * 59.99878 * 1 2 3 34 34 H 0.96997 * 119.99921 * 180.02562 * 7 6 4 35 35 H 0.97004 * 119.99396 * 94.99944 * 12 2 1 36 36 H 1.09002 * 109.47060 * 60.00000 * 15 13 12 37 37 H 1.09001 * 109.46927 * 300.00196 * 15 13 12 38 38 H 1.09002 * 109.47153 * 60.00002 * 16 15 13 39 39 H 1.09001 * 109.46832 * 300.00193 * 16 15 13 40 40 H 1.09002 * 109.47103 * 59.99753 * 17 16 15 41 41 H 1.08998 * 109.46862 * 300.00565 * 17 16 15 42 42 H 1.09002 * 109.47153 * 59.99783 * 18 17 16 43 43 H 1.09001 * 109.46832 * 299.99974 * 18 17 16 44 44 H 1.08997 * 111.23510 * 142.13504 * 22 21 19 45 45 H 1.09001 * 111.23571 * 266.57591 * 22 21 19 46 46 H 0.96999 * 127.27075 * 326.35025 * 25 23 22 47 47 H 0.96996 * 127.50537 * 166.45912 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8257 -2.5200 -4.0078 10 1 1.8258 -0.4203 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0183 2.3572 14 8 1.8581 1.1583 2.4117 15 6 2.6489 -0.7289 3.5877 16 6 2.6999 0.2540 4.7591 17 6 3.2100 -0.4672 6.0082 18 6 3.2616 0.5159 7.1795 19 6 3.7724 -0.2053 8.4285 20 1 4.7486 -0.6530 8.2428 21 16 2.5623 -1.4811 8.9891 22 6 2.0577 -0.6387 10.5553 23 6 2.3881 0.8064 10.2075 24 1 1.6870 1.1813 9.4619 25 7 2.6170 1.8175 11.2147 26 6 3.5578 2.6544 10.6833 27 8 3.8142 3.7539 11.1344 28 7 4.1798 2.1197 9.5877 29 6 3.8253 0.7319 9.6009 30 1 4.4457 0.2610 10.3635 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 0.7088 1.1615 -3.4843 35 1 2.2490 -1.6318 1.1525 36 1 3.6481 -1.1214 3.3985 37 1 1.9760 -1.5507 3.8325 38 1 1.7006 0.6461 4.9481 39 1 3.3726 1.0761 4.5145 40 1 4.2094 -0.8590 5.8189 41 1 2.5378 -1.2895 6.2529 42 1 2.2624 0.9081 7.3689 43 1 3.9342 1.3379 6.9344 44 1 0.9920 -0.7652 10.7459 45 1 2.6517 -0.9872 11.4002 46 1 2.1926 1.8872 12.0841 47 1 4.7390 2.5802 8.9427 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356437291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:22 Heat of formation + Delta-G solvation = -85.099727 kcal Electronic energy + Delta-G solvation = -26694.944308 eV Core-core repulsion = 22809.785714 eV Total energy + Delta-G solvation = -3885.158594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.63618 -40.53786 -38.66558 -37.05853 -36.47157 -34.49000 -34.28272 -33.86026 -31.94681 -30.75887 -28.67916 -27.33778 -25.66464 -24.03834 -23.03707 -22.89310 -21.87166 -21.67054 -20.98360 -18.88140 -18.70121 -18.31177 -17.68579 -17.35150 -17.13522 -16.82543 -16.72786 -16.28354 -15.96689 -15.67160 -15.48868 -15.14427 -14.93641 -14.65501 -14.44349 -14.15591 -13.89328 -13.63562 -13.36960 -13.15874 -12.99377 -12.90645 -12.77119 -12.64194 -12.53334 -12.26204 -12.15425 -12.10602 -11.91430 -11.83790 -11.74787 -11.49939 -11.11067 -11.01661 -10.67755 -10.59660 -10.50990 -9.84624 -9.69957 -8.73843 -8.16933 -6.34805 0.56949 1.02214 1.45147 1.47431 1.55281 1.65935 1.80748 1.91783 2.37304 2.65917 2.72386 3.08518 3.13071 3.44292 3.59356 3.77261 3.93036 4.00508 4.09697 4.21212 4.27070 4.38992 4.47243 4.59607 4.62435 4.67005 4.74144 4.77241 4.83960 4.88970 4.92930 4.99510 5.05128 5.11366 5.25008 5.44420 5.45401 5.55556 5.63597 5.71462 5.86966 5.93252 5.99776 6.11409 6.31464 6.73854 7.03851 7.33624 7.37882 7.64448 8.89129 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024032 B = 0.001708 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.836253 B =16385.532342 C =16889.124585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.006 1.006 4 C -0.547 4.547 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.270 1.270 12 N -0.710 5.710 13 C 0.490 3.510 14 O -0.607 6.607 15 C -0.128 4.128 16 C -0.097 4.097 17 C -0.108 4.108 18 C -0.105 4.105 19 C -0.019 4.019 20 H 0.135 0.865 21 S -0.267 6.267 22 C -0.060 4.060 23 C 0.102 3.898 24 H 0.089 0.911 25 N -0.720 5.720 26 C 0.704 3.296 27 O -0.608 6.608 28 N -0.717 5.717 29 C 0.106 3.894 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.010 0.990 33 H 0.065 0.935 34 H 0.265 0.735 35 H 0.406 0.594 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.130 0.870 45 H 0.118 0.882 46 H 0.440 0.560 47 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.767 -8.988 29.141 31.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.165 3.835 3 H 0.012 0.988 4 C -0.585 4.585 5 H 0.092 0.908 6 C -0.189 4.189 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.188 1.188 10 H -0.213 1.213 11 H -0.195 1.195 12 N -0.359 5.359 13 C 0.278 3.722 14 O -0.490 6.490 15 C -0.167 4.167 16 C -0.135 4.135 17 C -0.145 4.145 18 C -0.144 4.144 19 C -0.148 4.148 20 H 0.152 0.848 21 S -0.041 6.041 22 C -0.209 4.209 23 C -0.007 4.007 24 H 0.107 0.893 25 N -0.386 5.386 26 C 0.405 3.595 27 O -0.485 6.485 28 N -0.382 5.382 29 C -0.003 4.003 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.029 0.971 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.148 0.852 45 H 0.137 0.863 46 H 0.285 0.715 47 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 5.263 -8.551 28.785 30.486 hybrid contribution 0.418 1.052 -0.667 1.314 sum 5.681 -7.499 28.119 29.651 Atomic orbital electron populations 1.21889 0.98478 0.99397 0.99412 1.18300 0.91040 0.91816 0.82391 0.98808 1.21536 1.32571 1.13561 0.90817 0.90755 1.25856 0.94925 0.95628 1.02489 1.70055 1.37032 1.23980 1.24637 0.85366 0.78648 0.78691 0.77430 1.18779 1.21300 1.19507 1.46342 1.65328 1.14278 1.09917 1.21711 0.77213 0.87196 0.86060 1.90623 1.53395 1.18836 1.86154 1.21716 1.04314 0.99812 0.90895 1.21229 1.01290 0.97395 0.93559 1.21534 1.02446 0.98114 0.92436 1.21656 1.01949 0.98182 0.92586 1.23107 1.01432 0.94695 0.95545 0.84757 1.88616 1.54765 1.33263 1.27435 1.23893 1.07430 0.92120 0.97458 1.22561 0.97285 0.90277 0.90557 0.89331 1.45050 1.43847 1.28981 1.20701 1.17512 0.79158 0.82790 0.80062 1.90956 1.69975 1.21651 1.65953 1.44773 1.54498 1.09056 1.29872 1.21552 0.96316 0.84337 0.98137 0.90045 0.94048 0.97065 0.91663 0.92592 0.75936 0.86799 0.86877 0.93276 0.93026 0.90264 0.90676 0.91599 0.90325 0.85157 0.86316 0.71523 0.71851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.83 9.26 71.98 0.67 -6.16 16 2 C 0.27 14.05 2.56 44.24 0.11 14.17 16 3 H -0.01 -0.37 7.58 -2.38 -0.02 -0.39 16 4 C -0.55 -28.96 8.73 25.60 0.22 -28.74 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -53.16 11.32 21.45 0.24 -52.91 16 8 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 9 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 12 N -0.71 -29.03 5.07 -446.11 -2.26 -31.29 16 13 C 0.49 18.91 7.79 87.66 0.68 19.59 16 14 O -0.61 -29.65 15.65 -3.03 -0.05 -29.70 16 15 C -0.13 -3.05 5.70 29.85 0.17 -2.88 16 16 C -0.10 -2.16 4.50 30.59 0.14 -2.02 16 17 C -0.11 -1.48 5.07 30.59 0.16 -1.33 16 18 C -0.10 -1.20 4.64 30.59 0.14 -1.06 16 19 C -0.02 -0.15 3.23 29.69 0.10 -0.05 16 20 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 21 S -0.27 -2.61 21.81 -56.49 -1.23 -3.84 16 22 C -0.06 -0.28 7.24 71.74 0.52 0.24 16 23 C 0.10 0.81 3.53 46.22 0.16 0.98 16 24 H 0.09 0.92 7.37 -2.39 -0.02 0.90 16 25 N -0.72 -7.55 6.55 -453.00 -2.97 -10.52 16 26 C 0.70 12.61 8.80 177.78 1.56 14.17 16 27 O -0.61 -16.85 18.05 -3.97 -0.07 -16.92 16 28 N -0.72 -8.76 6.43 -458.56 -2.95 -11.71 16 29 C 0.11 0.89 2.71 45.79 0.12 1.01 16 30 H 0.08 0.62 7.99 -2.38 -0.02 0.61 16 31 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.06 3.67 6.07 -2.39 -0.01 3.66 16 34 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.41 13.62 8.54 -92.71 -0.79 12.83 16 36 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 1.04 7.31 -2.39 -0.02 1.02 16 42 H 0.07 0.91 7.36 -2.39 -0.02 0.89 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 46 H 0.44 2.98 8.96 -92.71 -0.83 2.15 16 47 H 0.44 4.54 8.96 -92.71 -0.83 3.71 16 Total: -1.00 -77.72 390.49 -3.50 -81.22 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -1.44 Total: 22.84 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 5.21 Total: 8.94 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -7.94 Total: -106.44 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -0.12 Total: -46.62 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -1.23 Total: -3.84 kcal Total: -77.72 -3.50 -81.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356437291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.884 kcal (2) G-P(sol) polarization free energy of solvation -77.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds