Wall clock time and date at job start Wed Apr 1 2020 00:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 C 1.50704 * 109.47015 * 239.99815 * 2 1 3 5 5 H 1.08001 * 119.99906 * 240.00562 * 4 2 1 6 6 C 1.37874 * 119.99974 * 60.00134 * 4 2 1 7 7 N 1.31525 * 119.99991 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99990 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47119 * 60.00186 * 8 6 4 10 10 H 1.48506 * 109.47050 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47340 * 299.99720 * 8 6 4 12 12 N 1.46506 * 109.47011 * 120.00091 * 2 1 3 13 13 C 1.34775 * 119.99809 * 274.99749 * 12 2 1 14 14 O 1.21277 * 119.99994 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99725 * 180.02562 * 13 12 2 16 16 C 1.53003 * 109.46856 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46831 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.47032 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47452 * 179.97438 * 18 17 16 20 20 H 1.08999 * 110.67314 * 51.74493 * 19 18 17 21 21 S 1.83920 * 110.76040 * 288.29292 * 19 18 17 22 22 C 1.83910 * 94.80029 * 206.99871 * 21 19 18 23 23 C 1.54130 * 102.71624 * 34.69079 * 22 21 19 24 24 H 1.09008 * 110.50976 * 99.02346 * 23 22 21 25 25 N 1.47132 * 109.21997 * 220.48178 * 23 22 21 26 26 C 1.33995 * 109.04082 * 120.18526 * 25 23 22 27 27 O 1.21587 * 123.05779 * 179.97438 * 26 25 23 28 28 N 1.33998 * 113.88732 * 359.97438 * 26 25 23 29 29 C 1.47125 * 109.04369 * 0.02562 * 28 26 25 30 30 H 1.08998 * 110.26083 * 118.21010 * 29 28 26 31 31 H 1.08999 * 109.47303 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46574 * 300.00155 * 1 2 3 33 33 H 1.09003 * 109.46940 * 59.99868 * 1 2 3 34 34 H 0.96998 * 119.99817 * 179.97438 * 7 6 4 35 35 H 0.96996 * 119.99633 * 94.99589 * 12 2 1 36 36 H 1.08993 * 109.47506 * 59.99815 * 15 13 12 37 37 H 1.09005 * 109.47127 * 299.99814 * 15 13 12 38 38 H 1.08993 * 109.47276 * 59.99599 * 16 15 13 39 39 H 1.08994 * 109.47011 * 299.99308 * 16 15 13 40 40 H 1.08993 * 109.47505 * 59.99755 * 17 16 15 41 41 H 1.09005 * 109.47153 * 299.99739 * 17 16 15 42 42 H 1.09001 * 109.47699 * 59.99835 * 18 17 16 43 43 H 1.08999 * 109.47317 * 299.99681 * 18 17 16 44 44 H 1.08996 * 110.76366 * 276.38176 * 22 21 19 45 45 H 1.09008 * 110.76413 * 152.99464 * 22 21 19 46 46 H 0.96992 * 125.47730 * 300.16030 * 25 23 22 47 47 H 0.96999 * 125.48033 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0077 10 1 1.8269 -0.4200 -5.2205 11 1 3.8062 -1.1211 -4.0082 12 7 2.0184 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3572 14 8 1.8583 1.1583 2.4117 15 6 2.6500 -0.7286 3.5875 16 6 2.7007 0.2544 4.7589 17 6 3.2107 -0.4669 6.0081 18 6 3.2621 0.5161 7.1793 19 6 3.7714 -0.2053 8.4288 20 1 4.7036 -0.7292 8.2175 21 16 2.4988 -1.3644 9.0766 22 6 3.0918 -1.2875 10.8158 23 6 3.5686 0.1722 10.9475 24 1 2.8064 0.7805 11.4346 25 7 4.8188 0.2053 11.7226 26 6 5.7865 0.7441 10.9685 27 8 6.9274 0.8941 11.3612 28 7 5.3826 1.1027 9.7422 29 6 3.9536 0.7849 9.5954 30 1 3.3810 1.6949 9.4163 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5139 -0.8900 34 1 0.7096 1.1618 -3.4844 35 1 2.2490 -1.6318 1.1526 36 1 3.6492 -1.1205 3.3979 37 1 1.9777 -1.5509 3.8325 38 1 1.7013 0.6459 4.9483 39 1 3.3728 1.0768 4.5141 40 1 4.2100 -0.8587 5.8190 41 1 2.5383 -1.2893 6.2527 42 1 2.2629 0.9084 7.3687 43 1 3.9347 1.3382 6.9345 44 1 3.9188 -1.9799 10.9730 45 1 2.2776 -1.4923 11.5111 46 1 4.9252 -0.1116 12.6331 47 1 5.9421 1.5075 9.0610 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356437293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:25 Heat of formation + Delta-G solvation = -75.467945 kcal Electronic energy + Delta-G solvation = -26472.459624 eV Core-core repulsion = 22587.718695 eV Total energy + Delta-G solvation = -3884.740929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81574 -38.94046 -37.67723 -36.16912 -34.79383 -34.02076 -32.78734 -32.33389 -31.10279 -29.13701 -27.69402 -25.53753 -25.23022 -23.35828 -22.39964 -21.46099 -21.34761 -20.53522 -19.31693 -18.60841 -17.07769 -17.00666 -16.79785 -16.58289 -15.96326 -15.65019 -15.43591 -15.19564 -15.02511 -14.67642 -14.48652 -14.20966 -14.05153 -13.67302 -13.20978 -13.09931 -12.76221 -12.62431 -12.37528 -12.15386 -11.96957 -11.69325 -11.38925 -11.26839 -11.15982 -11.00869 -10.94549 -10.79658 -10.72791 -10.67608 -10.53225 -10.31842 -10.22814 -9.82129 -9.61432 -9.05173 -8.95216 -8.53972 -8.25871 -7.87747 -6.11832 -4.21203 1.13813 1.59537 2.29432 2.59998 3.25349 3.26998 3.30628 3.31737 3.45823 3.61021 3.65402 4.02391 4.11447 4.14095 4.32908 4.42440 4.59553 4.75924 4.84188 4.87360 4.96612 5.06245 5.12930 5.19868 5.25745 5.35433 5.45646 5.54164 5.74207 5.77082 5.90181 5.96638 6.27079 6.41659 6.42830 6.60297 6.80496 6.83667 6.97773 7.16583 7.48981 7.57961 7.70732 7.92812 8.08928 8.16225 8.70285 8.79429 9.17551 9.46662 10.94060 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027417 B = 0.001607 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.010599 B =17424.636428 C =17772.284654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.712 5.712 13 C 0.498 3.502 14 O -0.559 6.559 15 C -0.142 4.142 16 C -0.100 4.100 17 C -0.120 4.120 18 C -0.103 4.103 19 C -0.049 4.049 20 H 0.107 0.893 21 S -0.247 6.247 22 C -0.092 4.092 23 C 0.124 3.876 24 H 0.111 0.889 25 N -0.736 5.736 26 C 0.700 3.300 27 O -0.584 6.584 28 N -0.732 5.732 29 C 0.124 3.876 30 H 0.113 0.887 31 H 0.025 0.975 32 H 0.014 0.986 33 H 0.089 0.911 34 H 0.265 0.735 35 H 0.388 0.612 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.432 0.568 47 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 -3.920 28.851 29.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.359 5.359 13 C 0.283 3.717 14 O -0.439 6.439 15 C -0.183 4.183 16 C -0.138 4.138 17 C -0.158 4.158 18 C -0.141 4.141 19 C -0.179 4.179 20 H 0.125 0.875 21 S -0.020 6.020 22 C -0.241 4.241 23 C 0.016 3.984 24 H 0.128 0.872 25 N -0.399 5.399 26 C 0.398 3.602 27 O -0.461 6.461 28 N -0.395 5.395 29 C 0.016 3.984 30 H 0.131 0.869 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.220 0.780 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.118 0.882 45 H 0.134 0.866 46 H 0.274 0.726 47 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 2.910 -3.482 28.371 28.732 hybrid contribution 1.441 -0.480 -0.338 1.556 sum 4.350 -3.962 28.033 28.644 Atomic orbital electron populations 1.22071 0.98547 0.99040 1.00839 1.18720 0.90995 0.93965 0.80190 0.93481 1.21193 1.32449 1.13189 0.90402 0.92175 1.24900 0.94838 0.94978 0.99067 1.69899 1.35855 1.22415 1.23952 0.86503 0.79145 0.79580 0.81822 1.20178 1.21129 1.20203 1.46555 1.65135 1.13521 1.10729 1.20520 0.78627 0.87585 0.84932 1.90639 1.51579 1.16309 1.85334 1.21685 1.02620 0.99674 0.94279 1.21271 1.02617 0.97739 0.92194 1.21651 1.01840 0.98158 0.94130 1.21605 1.02586 0.98341 0.91599 1.24524 0.99919 0.96050 0.97421 0.87457 1.88457 1.43616 1.63424 1.06502 1.24639 1.04795 0.97698 0.97011 1.22511 0.88517 0.95986 0.91337 0.87152 1.45393 1.09605 1.67519 1.17386 1.16026 0.84477 0.78159 0.81510 1.91026 1.18205 1.61896 1.75012 1.45394 1.11118 1.67428 1.15582 1.22649 0.83672 0.99323 0.92794 0.86934 0.95535 0.96692 0.89216 0.92539 0.77986 0.89659 0.89663 0.91168 0.91226 0.91770 0.91412 0.89986 0.90099 0.88204 0.86573 0.72613 0.72368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.73 2.56 -69.08 -0.18 6.55 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.96 11.32 55.43 0.63 -24.33 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.71 -14.71 5.07 -54.93 -0.28 -14.98 16 13 C 0.50 9.64 7.79 -10.99 -0.09 9.55 16 14 O -0.56 -13.11 15.64 5.56 0.09 -13.02 16 15 C -0.14 -1.87 5.70 -27.88 -0.16 -2.02 16 16 C -0.10 -1.17 4.50 -26.73 -0.12 -1.29 16 17 C -0.12 -0.99 5.12 -26.73 -0.14 -1.13 16 18 C -0.10 -0.65 4.60 -26.73 -0.12 -0.77 16 19 C -0.05 -0.27 2.96 -26.15 -0.08 -0.35 16 20 H 0.11 0.67 8.01 -51.93 -0.42 0.26 16 21 S -0.25 -1.62 22.05 -107.50 -2.37 -3.99 16 22 C -0.09 -0.35 7.14 37.75 0.27 -0.08 16 23 C 0.12 0.46 4.16 -66.81 -0.28 0.18 16 24 H 0.11 0.22 8.14 -51.92 -0.42 -0.20 16 25 N -0.74 -3.86 5.91 -57.93 -0.34 -4.20 16 26 C 0.70 6.17 8.92 -88.31 -0.79 5.39 16 27 O -0.58 -7.93 18.05 5.29 0.10 -7.83 16 28 N -0.73 -4.49 5.91 -57.95 -0.34 -4.84 16 29 C 0.12 0.56 3.75 -66.83 -0.25 0.31 16 30 H 0.11 0.38 7.83 -51.93 -0.41 -0.02 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.39 6.89 8.54 -40.82 -0.35 6.54 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.59 7.57 -51.93 -0.39 0.20 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.43 8.01 -51.93 -0.42 0.01 16 45 H 0.12 0.26 8.14 -51.92 -0.42 -0.17 16 46 H 0.43 1.58 8.96 -40.82 -0.37 1.21 16 47 H 0.43 2.27 8.96 -40.82 -0.37 1.90 16 LS Contribution 392.35 15.07 5.91 5.91 Total: -1.00 -34.93 392.35 -11.22 -46.14 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.61 Total: 5.33 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.98 Total: 0.21 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.34 Total: -48.36 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.18 Total: -20.85 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.37 Total: -3.99 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.93 -11.22 -46.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356437293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.325 kcal (2) G-P(sol) polarization free energy of solvation -34.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds