Wall clock time and date at job start Wed Apr 1 2020 00:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47303 * 2 1 4 4 C 1.50704 * 109.47015 * 239.99815 * 2 1 3 5 5 H 1.08001 * 119.99906 * 240.00562 * 4 2 1 6 6 C 1.37874 * 119.99974 * 60.00134 * 4 2 1 7 7 N 1.31525 * 119.99991 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99990 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47119 * 60.00186 * 8 6 4 10 10 H 1.48506 * 109.47050 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47340 * 299.99720 * 8 6 4 12 12 N 1.46506 * 109.47011 * 120.00091 * 2 1 3 13 13 C 1.34775 * 119.99809 * 274.99749 * 12 2 1 14 14 O 1.21277 * 119.99994 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99725 * 180.02562 * 13 12 2 16 16 C 1.53003 * 109.46856 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46831 * 179.97438 * 16 15 13 18 18 C 1.52995 * 109.47032 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47452 * 179.97438 * 18 17 16 20 20 H 1.08999 * 110.67314 * 51.74493 * 19 18 17 21 21 S 1.83920 * 110.76040 * 288.29292 * 19 18 17 22 22 C 1.83910 * 94.80029 * 206.99871 * 21 19 18 23 23 C 1.54130 * 102.71624 * 34.69079 * 22 21 19 24 24 H 1.09008 * 110.50976 * 99.02346 * 23 22 21 25 25 N 1.47132 * 109.21997 * 220.48178 * 23 22 21 26 26 C 1.33995 * 109.04082 * 120.18526 * 25 23 22 27 27 O 1.21587 * 123.05779 * 179.97438 * 26 25 23 28 28 N 1.33998 * 113.88732 * 359.97438 * 26 25 23 29 29 C 1.47125 * 109.04369 * 0.02562 * 28 26 25 30 30 H 1.08998 * 110.26083 * 118.21010 * 29 28 26 31 31 H 1.08999 * 109.47303 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46574 * 300.00155 * 1 2 3 33 33 H 1.09003 * 109.46940 * 59.99868 * 1 2 3 34 34 H 0.96998 * 119.99817 * 179.97438 * 7 6 4 35 35 H 0.96996 * 119.99633 * 94.99589 * 12 2 1 36 36 H 1.08993 * 109.47506 * 59.99815 * 15 13 12 37 37 H 1.09005 * 109.47127 * 299.99814 * 15 13 12 38 38 H 1.08993 * 109.47276 * 59.99599 * 16 15 13 39 39 H 1.08994 * 109.47011 * 299.99308 * 16 15 13 40 40 H 1.08993 * 109.47505 * 59.99755 * 17 16 15 41 41 H 1.09005 * 109.47153 * 299.99739 * 17 16 15 42 42 H 1.09001 * 109.47699 * 59.99835 * 18 17 16 43 43 H 1.08999 * 109.47317 * 299.99681 * 18 17 16 44 44 H 1.08996 * 110.76366 * 276.38176 * 22 21 19 45 45 H 1.09008 * 110.76413 * 152.99464 * 22 21 19 46 46 H 0.96992 * 125.47730 * 300.16030 * 25 23 22 47 47 H 0.96999 * 125.48033 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 1.8257 -2.5203 -4.0077 10 1 1.8269 -0.4200 -5.2205 11 1 3.8062 -1.1211 -4.0082 12 7 2.0184 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3572 14 8 1.8583 1.1583 2.4117 15 6 2.6500 -0.7286 3.5875 16 6 2.7007 0.2544 4.7589 17 6 3.2107 -0.4669 6.0081 18 6 3.2621 0.5161 7.1793 19 6 3.7714 -0.2053 8.4288 20 1 4.7036 -0.7292 8.2175 21 16 2.4988 -1.3644 9.0766 22 6 3.0918 -1.2875 10.8158 23 6 3.5686 0.1722 10.9475 24 1 2.8064 0.7805 11.4346 25 7 4.8188 0.2053 11.7226 26 6 5.7865 0.7441 10.9685 27 8 6.9274 0.8941 11.3612 28 7 5.3826 1.1027 9.7422 29 6 3.9536 0.7849 9.5954 30 1 3.3810 1.6949 9.4163 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5139 -0.8900 34 1 0.7096 1.1618 -3.4844 35 1 2.2490 -1.6318 1.1526 36 1 3.6492 -1.1205 3.3979 37 1 1.9777 -1.5509 3.8325 38 1 1.7013 0.6459 4.9483 39 1 3.3728 1.0768 4.5141 40 1 4.2100 -0.8587 5.8190 41 1 2.5383 -1.2893 6.2527 42 1 2.2629 0.9084 7.3687 43 1 3.9347 1.3382 6.9345 44 1 3.9188 -1.9799 10.9730 45 1 2.2776 -1.4923 11.5111 46 1 4.9252 -0.1116 12.6331 47 1 5.9421 1.5075 9.0610 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356437293.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:24 Heat of formation + Delta-G solvation = -101.786869 kcal Electronic energy + Delta-G solvation = -26473.600898 eV Core-core repulsion = 22587.718695 eV Total energy + Delta-G solvation = -3885.882203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.32272 -40.54428 -38.35167 -37.08118 -36.49176 -34.61929 -34.28612 -33.46557 -31.85624 -30.75303 -28.52771 -27.33668 -26.13907 -24.21086 -22.96653 -22.68724 -21.95007 -21.58977 -20.99083 -19.12933 -18.80739 -17.56307 -17.40678 -17.28641 -17.14846 -17.03623 -16.76402 -16.04026 -15.93134 -15.73721 -15.43620 -15.06479 -14.87495 -14.55403 -14.41110 -14.38748 -13.96799 -13.62973 -13.38058 -13.22132 -12.96740 -12.91343 -12.77047 -12.70023 -12.52714 -12.26342 -12.15833 -12.02750 -11.99147 -11.86612 -11.55156 -11.48058 -11.19900 -11.11027 -10.67213 -10.52617 -10.38511 -10.03448 -9.70240 -8.74759 -8.17093 -6.34851 0.72192 1.19433 1.44966 1.47078 1.54918 1.84548 1.90889 1.97199 2.37009 2.70441 2.89364 3.12877 3.22073 3.27355 3.68029 3.73088 3.93510 3.97986 4.07366 4.18523 4.20503 4.44890 4.54108 4.56626 4.65488 4.68062 4.74160 4.79574 4.82678 4.87370 4.92747 4.99033 5.02122 5.11078 5.24738 5.41861 5.45108 5.53092 5.63390 5.71403 5.91318 5.92916 6.11392 6.21240 6.27664 6.73599 7.03083 7.33454 7.50686 7.63334 8.88926 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.027417 B = 0.001607 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.010599 B =17424.636428 C =17772.284654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.264 1.264 10 H -0.287 1.287 11 H -0.271 1.271 12 N -0.710 5.710 13 C 0.491 3.509 14 O -0.606 6.606 15 C -0.129 4.129 16 C -0.096 4.096 17 C -0.109 4.109 18 C -0.100 4.100 19 C -0.036 4.036 20 H 0.101 0.899 21 S -0.290 6.290 22 C -0.077 4.077 23 C 0.127 3.873 24 H 0.138 0.862 25 N -0.723 5.723 26 C 0.691 3.309 27 O -0.639 6.639 28 N -0.725 5.725 29 C 0.123 3.877 30 H 0.131 0.869 31 H 0.040 0.960 32 H 0.011 0.989 33 H 0.065 0.935 34 H 0.265 0.735 35 H 0.405 0.595 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.137 0.863 46 H 0.439 0.561 47 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 -5.783 29.977 30.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.013 0.987 4 C -0.585 4.585 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.359 5.359 13 C 0.279 3.721 14 O -0.488 6.488 15 C -0.169 4.169 16 C -0.134 4.134 17 C -0.147 4.147 18 C -0.138 4.138 19 C -0.165 4.165 20 H 0.119 0.881 21 S -0.063 6.063 22 C -0.226 4.226 23 C 0.020 3.980 24 H 0.156 0.844 25 N -0.386 5.386 26 C 0.390 3.610 27 O -0.521 6.521 28 N -0.387 5.387 29 C 0.016 3.984 30 H 0.148 0.852 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.240 0.760 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.114 0.886 45 H 0.156 0.844 46 H 0.283 0.717 47 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 3.062 -5.398 29.519 30.164 hybrid contribution 1.340 0.124 -0.664 1.500 sum 4.402 -5.274 28.855 29.661 Atomic orbital electron populations 1.21889 0.98416 0.99380 0.99474 1.18318 0.91089 0.91864 0.82325 0.98653 1.21533 1.32590 1.13556 0.90864 0.90859 1.25836 0.94910 0.95625 1.02419 1.70056 1.37005 1.23927 1.24638 0.85378 0.78624 0.78690 0.77514 1.18845 1.21218 1.19582 1.46349 1.65329 1.14264 1.09948 1.21653 0.77232 0.87198 0.85989 1.90618 1.53364 1.18707 1.86126 1.21718 1.04154 0.99880 0.91133 1.21229 1.01580 0.97378 0.93212 1.21535 1.02033 0.98107 0.93023 1.21558 1.02905 0.98152 0.91231 1.24372 0.99076 0.95725 0.97353 0.88050 1.88629 1.44349 1.64039 1.09312 1.24670 1.05231 0.97541 0.95130 1.22709 0.88191 0.96384 0.90747 0.84447 1.45350 1.09424 1.66312 1.17529 1.16308 0.84179 0.78264 0.82295 1.90981 1.20640 1.64255 1.76239 1.45392 1.11914 1.66603 1.14833 1.22826 0.82725 0.99883 0.92967 0.85183 0.94121 0.96961 0.91624 0.92572 0.76004 0.87049 0.87092 0.92817 0.92616 0.90818 0.91455 0.90050 0.89266 0.88578 0.84448 0.71736 0.72050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.79 9.26 71.98 0.67 -6.12 16 2 C 0.27 13.99 2.56 44.25 0.11 14.11 16 3 H 0.00 -0.28 7.58 -2.39 -0.02 -0.29 16 4 C -0.55 -29.02 8.73 25.60 0.22 -28.80 16 5 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 6 C 0.01 0.65 5.30 84.65 0.45 1.10 16 7 N -0.92 -52.92 11.32 21.45 0.24 -52.68 16 8 Si 0.97 41.92 29.54 68.60 2.03 43.95 16 9 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 10 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 12 N -0.71 -29.09 5.07 -446.08 -2.26 -31.36 16 13 C 0.49 18.90 7.79 87.66 0.68 19.59 16 14 O -0.61 -29.23 15.64 -3.02 -0.05 -29.27 16 15 C -0.13 -3.13 5.70 29.85 0.17 -2.96 16 16 C -0.10 -2.12 4.50 30.60 0.14 -1.98 16 17 C -0.11 -1.58 5.12 30.59 0.16 -1.42 16 18 C -0.10 -1.07 4.60 30.59 0.14 -0.93 16 19 C -0.04 -0.32 2.96 30.97 0.09 -0.23 16 20 H 0.10 1.08 8.01 -2.39 -0.02 1.06 16 21 S -0.29 -3.22 22.05 -56.49 -1.25 -4.46 16 22 C -0.08 -0.38 7.14 72.36 0.52 0.14 16 23 C 0.13 0.58 4.16 45.37 0.19 0.77 16 24 H 0.14 0.01 8.14 -2.38 -0.02 -0.01 16 25 N -0.72 -6.28 5.91 -455.88 -2.69 -8.97 16 26 C 0.69 11.61 8.92 179.54 1.60 13.21 16 27 O -0.64 -17.56 18.05 -3.99 -0.07 -17.63 16 28 N -0.73 -7.93 5.91 -455.95 -2.69 -10.62 16 29 C 0.12 0.83 3.75 45.36 0.17 1.00 16 30 H 0.13 0.50 7.83 -2.39 -0.02 0.48 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16 34 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 35 H 0.40 13.73 8.54 -92.71 -0.79 12.94 16 36 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 39 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 1.02 7.57 -2.38 -0.02 1.00 16 42 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.10 0.60 8.01 -2.39 -0.02 0.58 16 45 H 0.14 0.14 8.14 -2.38 -0.02 0.12 16 46 H 0.44 2.45 8.96 -92.71 -0.83 1.62 16 47 H 0.44 4.15 8.96 -92.71 -0.83 3.32 16 Total: -1.00 -79.07 392.35 -2.88 -81.95 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -1.45 Total: 21.63 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 5.31 Total: 7.47 kcal Atomic # 7 Polarization: -96.22 SS G_CDS: -7.41 Total: -103.62 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -0.12 Total: -46.91 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -1.25 Total: -4.46 kcal Total: -79.07 -2.88 -81.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356437293.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.836 kcal (2) G-P(sol) polarization free energy of solvation -79.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds